Wall clock time and date at job start Mon Mar 30 2020 06:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99868 * 2 1 4 4 H 1.48504 * 109.46981 * 270.00026 * 3 2 1 5 5 H 1.48501 * 109.47259 * 30.00129 * 3 2 1 6 6 H 1.48502 * 109.46856 * 150.00270 * 3 2 1 7 7 C 1.37881 * 119.99553 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99180 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00384 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46933 * 180.02562 * 9 7 2 11 11 N 1.46504 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.37065 * 124.73592 * 270.01460 * 11 10 9 13 13 C 1.32899 * 108.75450 * 179.97438 * 12 11 10 14 14 C 1.47161 * 106.81578 * 359.52064 * 13 12 11 15 15 C 1.35028 * 124.74686 * 89.96777 * 11 10 9 16 16 C 1.47029 * 123.84585 * 181.74819 * 14 13 12 17 17 O 1.21344 * 122.18215 * 239.54657 * 16 14 13 18 18 C 1.52345 * 115.63455 * 59.52526 * 16 14 13 19 19 C 1.50236 * 110.14853 * 285.92197 * 18 16 14 20 20 C 1.50749 * 117.12585 * 70.26579 * 19 18 16 21 21 C 1.52069 * 130.00470 * 179.22677 * 13 12 11 22 22 H 0.97002 * 120.00400 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47265 * 60.00299 * 9 7 2 24 24 H 1.09006 * 109.47283 * 300.00077 * 9 7 2 25 25 H 1.08994 * 109.47586 * 60.00082 * 10 9 7 26 26 H 1.09001 * 109.46684 * 299.99598 * 10 9 7 27 27 H 1.08000 * 125.62532 * 0.03829 * 12 11 10 28 28 H 1.07997 * 126.08266 * 0.53707 * 15 11 10 29 29 H 1.09000 * 109.35450 * 165.71652 * 18 16 14 30 30 H 1.08995 * 109.36249 * 46.13288 * 18 16 14 31 31 H 1.09005 * 107.91466 * 192.19517 * 19 18 16 32 32 H 1.08999 * 107.91528 * 308.33056 * 19 18 16 33 33 H 1.09002 * 108.97737 * 41.09962 * 20 19 18 34 34 H 1.08993 * 108.97628 * 159.81009 * 20 19 18 35 35 H 1.08999 * 109.97901 * 359.60535 * 21 13 12 36 36 H 1.09001 * 110.06070 * 238.29974 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 1.1216 -5.6074 1.1249 13 6 0.4825 -6.7135 0.7585 14 6 0.4621 -6.7258 -0.7130 15 6 1.1278 -5.5967 -1.1110 16 6 -0.1896 -7.7722 -1.5142 17 8 0.4237 -8.4533 -2.3094 18 6 -1.6850 -7.9459 -1.2805 19 6 -1.9272 -8.6276 0.0362 20 6 -1.6320 -7.8360 1.2846 21 6 -0.1348 -7.8130 1.6085 22 1 -0.4851 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6246 -2.5571 0.8897 25 1 2.8719 -3.6044 0.8894 26 1 2.8718 -3.6043 -0.8906 27 1 1.3020 -5.2929 2.1422 28 1 1.3120 -5.2931 -2.1309 29 1 -2.1083 -8.5496 -2.0832 30 1 -2.1658 -6.9678 -1.2748 31 1 -2.9742 -8.9291 0.0700 32 1 -1.3206 -9.5328 0.0617 33 1 -1.9804 -6.8125 1.1461 34 1 -2.1691 -8.2813 2.1220 35 1 0.0143 -7.5943 2.6659 36 1 0.3148 -8.7745 1.3603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135386174.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:25 Heat of formation + Delta-G solvation = -30.070635 kcal Electronic energy + Delta-G solvation = -17491.634302 eV Core-core repulsion = 14746.931811 eV Total energy + Delta-G solvation = -2744.702491 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.20298 -39.94598 -37.17791 -35.79911 -33.86842 -32.31177 -30.68626 -29.35625 -27.37581 -25.30015 -24.01736 -22.87509 -21.28612 -20.56218 -19.48478 -18.79588 -17.79634 -16.67383 -16.60078 -16.04007 -15.69387 -15.40910 -15.23736 -14.77613 -14.51020 -14.30186 -14.27525 -14.09309 -13.78173 -13.24812 -12.90451 -12.69779 -12.62510 -12.43545 -12.08639 -11.81253 -11.67248 -11.56187 -11.50665 -11.42642 -10.63624 -10.59864 -9.21060 -9.16579 -8.26666 -6.40096 0.72786 1.40594 1.41387 1.46710 1.52957 1.88711 2.09968 2.40102 3.08121 3.31952 3.85344 3.95169 4.03346 4.09823 4.17357 4.20758 4.41415 4.46259 4.52878 4.61777 4.69857 4.78395 4.90743 4.96953 5.13191 5.16329 5.22655 5.29178 5.35133 5.36929 5.49860 5.54572 5.69555 5.95172 6.04966 6.30130 6.45941 6.58873 6.76472 7.30897 8.85120 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.035548 B = 0.004625 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.487459 B = 6052.141944 C = 6166.470661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.022 3.978 10 C 0.116 3.884 11 N -0.442 5.442 12 C -0.014 4.014 13 C -0.144 4.144 14 C -0.294 4.294 15 C 0.044 3.956 16 C 0.447 3.553 17 O -0.502 6.502 18 C -0.150 4.150 19 C -0.106 4.106 20 C -0.113 4.113 21 C -0.045 4.045 22 H 0.265 0.735 23 H -0.009 1.009 24 H -0.004 1.004 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.178 0.822 28 H 0.168 0.832 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -14.252 3.250 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.015 4.015 10 C -0.005 4.005 11 N -0.116 5.116 12 C -0.140 4.140 13 C -0.150 4.150 14 C -0.302 4.302 15 C -0.090 4.090 16 C 0.326 3.674 17 O -0.379 6.379 18 C -0.188 4.188 19 C -0.144 4.144 20 C -0.151 4.151 21 C -0.082 4.082 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.015 0.985 25 H 0.114 0.886 26 H 0.107 0.893 27 H 0.195 0.805 28 H 0.186 0.814 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.964 -14.183 2.881 14.605 hybrid contribution 0.267 1.375 -0.309 1.435 sum -1.698 -12.807 2.572 13.173 Atomic orbital electron populations 1.70104 1.07989 1.28041 1.50931 1.25961 0.95666 1.03479 0.94321 0.85397 0.78736 0.78150 0.78475 1.19916 1.20975 1.18287 1.21495 0.93890 0.91376 1.51595 0.91056 1.19240 0.94295 0.92479 0.95511 1.22087 0.94422 0.79826 1.04138 1.44328 1.43056 1.18643 1.05566 1.21488 1.05688 0.94766 0.92065 1.20798 1.04718 0.98137 0.91316 1.21291 1.12434 1.00887 0.95611 1.21919 1.00388 0.94277 0.92463 1.22548 0.91537 0.77666 0.75635 1.90492 1.70639 1.43895 1.32865 1.21865 0.91934 1.04190 1.00845 1.20385 1.03619 0.98658 0.91718 1.21163 0.95271 1.00829 0.97825 1.20477 0.94853 0.94581 0.98327 0.92631 0.99043 0.98522 0.88570 0.89295 0.80489 0.81433 0.88419 0.88719 0.88911 0.92302 0.92706 0.89074 0.89258 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.29 21.45 0.28 -54.62 16 2 C 0.00 0.24 5.46 84.66 0.46 0.71 16 3 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.55 -28.93 9.11 25.60 0.23 -28.70 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.12 5.30 29.85 0.16 1.27 16 10 C 0.12 4.40 5.94 86.38 0.51 4.92 16 11 N -0.44 -15.88 2.71 -524.75 -1.42 -17.30 16 12 C -0.01 -0.43 11.31 82.70 0.93 0.50 16 13 C -0.14 -4.30 5.44 -18.25 -0.10 -4.40 16 14 C -0.29 -9.78 5.88 -18.92 -0.11 -9.89 16 15 C 0.04 1.58 11.44 83.91 0.96 2.54 16 16 C 0.45 13.93 6.53 28.52 0.19 14.12 16 17 O -0.50 -18.57 17.98 -3.23 -0.06 -18.62 16 18 C -0.15 -3.41 5.81 29.49 0.17 -3.23 16 19 C -0.11 -1.93 5.03 28.97 0.15 -1.78 16 20 C -0.11 -2.14 5.49 29.93 0.16 -1.97 16 21 C -0.04 -0.97 6.12 30.36 0.19 -0.78 16 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 25 H 0.10 3.33 8.13 -2.39 -0.02 3.31 16 26 H 0.09 3.18 8.13 -2.39 -0.02 3.16 16 27 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 28 H 0.17 5.54 8.06 -2.91 -0.02 5.52 16 29 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.08 7.70 -2.39 -0.02 1.06 16 33 H 0.05 1.23 7.83 -2.39 -0.02 1.21 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.50 7.77 -2.39 -0.02 1.48 16 Total: -1.00 -65.88 302.40 5.79 -60.10 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.05 Total: 12.98 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 3.90 Total: -26.71 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: -1.14 Total: -71.93 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.06 Total: -18.62 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.88 5.79 -60.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135386174.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.025 kcal (2) G-P(sol) polarization free energy of solvation -65.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds