Wall clock time and date at job start Mon Mar 30 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48499 * 109.47278 * 270.00088 * 3 2 1 5 5 H 1.48498 * 109.46907 * 30.00080 * 3 2 1 6 6 H 1.48504 * 109.46658 * 150.00042 * 3 2 1 7 7 C 1.37878 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47422 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.37074 * 124.74736 * 269.97807 * 12 11 10 14 14 C 1.32910 * 109.00312 * 179.97438 * 13 12 11 15 15 C 1.47874 * 106.20718 * 0.15594 * 14 13 12 16 16 C 1.35171 * 124.74568 * 89.98123 * 12 11 10 17 17 C 1.46823 * 120.65013 * 179.65484 * 15 14 13 18 18 O 1.21344 * 122.67426 * 168.22879 * 17 15 14 19 19 C 1.52254 * 114.65740 * 348.20572 * 17 15 14 20 20 C 1.53020 * 109.07911 * 43.98680 * 19 17 15 21 21 C 1.50472 * 131.52005 * 180.49212 * 14 13 12 22 22 H 0.96997 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47523 * 59.99596 * 9 7 2 24 24 H 1.09009 * 109.46943 * 299.99198 * 9 7 2 25 25 H 1.09008 * 109.47119 * 59.99864 * 10 9 7 26 26 H 1.08999 * 109.47082 * 299.99910 * 10 9 7 27 27 H 1.09012 * 109.46991 * 60.00222 * 11 10 9 28 28 H 1.08999 * 109.47501 * 300.00367 * 11 10 9 29 29 H 1.08010 * 125.49599 * 0.02614 * 13 12 11 30 30 H 1.08004 * 126.11385 * 359.87363 * 16 12 11 31 31 H 1.09002 * 109.55150 * 163.89201 * 19 17 15 32 32 H 1.09003 * 109.54981 * 284.08519 * 19 17 15 33 33 H 1.08999 * 109.12644 * 53.21618 * 20 19 17 34 34 H 1.08998 * 109.12458 * 172.31775 * 20 19 17 35 35 H 1.08997 * 109.58329 * 279.54137 * 21 14 13 36 36 H 1.09000 * 109.58042 * 39.81496 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4322 -6.1006 -0.0049 13 6 2.9387 -6.6937 -1.1321 14 6 3.7708 -7.6659 -0.7728 15 6 3.7774 -7.6781 0.7058 16 6 2.9339 -6.6868 1.1049 17 6 4.5968 -8.6484 1.4427 18 8 4.7959 -8.5647 2.6368 19 6 5.1763 -9.7682 0.5894 20 6 5.7267 -9.1742 -0.7089 21 6 4.6000 -8.6211 -1.5879 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8882 25 1 2.8719 -3.6051 0.8873 26 1 2.8718 -3.6036 -0.8927 27 1 0.8533 -5.0443 -0.8932 28 1 0.8538 -5.0454 0.8868 29 1 2.7007 -6.4154 -2.1482 30 1 2.7062 -6.4170 2.1257 31 1 5.9806 -10.2629 1.1339 32 1 4.3946 -10.4915 0.3569 33 1 6.4181 -8.3669 -0.4673 34 1 6.2618 -9.9492 -1.2576 35 1 3.9740 -9.4424 -1.9366 36 1 5.0252 -8.0970 -2.4438 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135390199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:22 Heat of formation + Delta-G solvation = -18.863159 kcal Electronic energy + Delta-G solvation = -17054.033494 eV Core-core repulsion = 14309.816996 eV Total energy + Delta-G solvation = -2744.216499 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25705 -38.66520 -35.90009 -34.45091 -32.48456 -30.30675 -29.93284 -27.41799 -26.66591 -23.96875 -22.11150 -21.66393 -20.43037 -19.67374 -18.24293 -16.97763 -16.17838 -15.54691 -15.11070 -14.63400 -14.56238 -14.25833 -14.15221 -13.94169 -13.64350 -13.18205 -12.81582 -12.40957 -12.12606 -11.84179 -11.69778 -11.36526 -11.18829 -10.93485 -10.90416 -10.84380 -10.64669 -9.96263 -9.65602 -9.45476 -9.27277 -8.46281 -8.26884 -8.18828 -6.11123 -4.14286 1.54723 2.52887 3.05919 3.26128 3.32819 3.33929 3.36644 4.27520 4.37955 4.68620 4.86269 4.99030 5.03549 5.09146 5.15494 5.25455 5.42677 5.46594 5.51979 5.59293 5.71712 5.74052 5.75236 5.87108 6.07542 6.13684 6.25380 6.35075 6.50777 6.82775 6.90499 7.23687 7.42236 7.49196 7.59670 7.82437 7.86472 8.27944 8.91813 9.50898 11.00099 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.038216 B = 0.003872 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.496834 B = 7229.194354 C = 7306.461812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.124 4.124 11 C 0.095 3.905 12 N -0.438 5.438 13 C 0.001 3.999 14 C -0.146 4.146 15 C -0.288 4.288 16 C 0.098 3.902 17 C 0.433 3.567 18 O -0.480 6.480 19 C -0.157 4.157 20 C -0.107 4.107 21 C -0.044 4.044 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -17.782 -3.509 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.162 4.162 11 C -0.025 4.025 12 N -0.112 5.112 13 C -0.125 4.125 14 C -0.152 4.152 15 C -0.296 4.296 16 C -0.039 4.039 17 C 0.313 3.687 18 O -0.358 6.358 19 C -0.195 4.195 20 C -0.145 4.145 21 C -0.082 4.082 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.180 0.820 30 H 0.189 0.811 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.097 -17.346 -2.942 18.620 hybrid contribution 0.289 1.118 -0.101 1.159 sum 6.386 -16.228 -3.043 17.702 Atomic orbital electron populations 1.69949 1.06078 1.26840 1.50512 1.25013 0.94873 0.99370 0.95068 0.86564 0.79881 0.83233 0.78191 1.20573 1.21110 1.19807 1.21175 0.93076 0.90824 1.51124 0.92617 1.19055 0.93749 0.91021 0.97525 1.22066 0.99774 0.92741 1.01658 1.22370 0.90763 0.85131 1.04243 1.44435 1.34801 1.26801 1.05162 1.21016 1.01697 0.98233 0.91531 1.20474 1.01895 1.00001 0.92793 1.21007 1.09461 1.04837 0.94301 1.21737 0.96449 0.93516 0.92159 1.21830 0.76104 0.83688 0.87089 1.90525 1.54592 1.73799 1.16853 1.22213 1.01998 0.98023 0.97229 1.21400 0.97981 1.00541 0.94581 1.19891 0.95189 0.96587 0.96516 0.92850 0.96301 0.96272 0.92535 0.92488 0.89230 0.89304 0.81963 0.81139 0.89800 0.88705 0.91599 0.91062 0.91011 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.37 5.48 -26.73 -0.15 -2.51 16 11 C 0.10 1.43 6.01 -4.05 -0.02 1.41 16 12 N -0.44 -6.34 2.71 -117.41 -0.32 -6.66 16 13 C 0.00 0.02 11.29 -17.05 -0.19 -0.18 16 14 C -0.15 -1.86 6.19 -102.63 -0.64 -2.50 16 15 C -0.29 -4.19 6.29 -103.24 -0.65 -4.84 16 16 C 0.10 1.45 11.43 -16.83 -0.19 1.26 16 17 C 0.43 6.17 7.10 -30.07 -0.21 5.96 16 18 O -0.48 -8.37 18.00 5.50 0.10 -8.27 16 19 C -0.16 -1.57 6.08 -27.10 -0.16 -1.74 16 20 C -0.11 -0.95 5.74 -26.60 -0.15 -1.10 16 21 C -0.04 -0.41 6.27 -27.87 -0.17 -0.59 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 25 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.09 1.24 8.13 -51.92 -0.42 0.82 16 28 H 0.09 1.26 8.13 -51.93 -0.42 0.84 16 29 H 0.16 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.17 2.30 8.06 -52.48 -0.42 1.88 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -31.36 306.10 -8.44 -39.80 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -5.46 Total: -2.80 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.10 Total: -17.55 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.42 Total: -32.06 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.10 Total: -8.27 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.36 -8.44 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135390199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.940 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds