Wall clock time and date at job start Mon Mar 30 2020 06:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99957 * 2 1 4 4 H 1.48499 * 109.47278 * 270.00088 * 3 2 1 5 5 H 1.48498 * 109.46907 * 30.00080 * 3 2 1 6 6 H 1.48504 * 109.46658 * 150.00042 * 3 2 1 7 7 C 1.37878 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47422 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.37074 * 124.74736 * 269.97807 * 12 11 10 14 14 C 1.32910 * 109.00312 * 179.97438 * 13 12 11 15 15 C 1.47874 * 106.20718 * 0.15594 * 14 13 12 16 16 C 1.35171 * 124.74568 * 89.98123 * 12 11 10 17 17 C 1.46823 * 120.65013 * 179.65484 * 15 14 13 18 18 O 1.21344 * 122.67426 * 168.22879 * 17 15 14 19 19 C 1.52254 * 114.65740 * 348.20572 * 17 15 14 20 20 C 1.53020 * 109.07911 * 43.98680 * 19 17 15 21 21 C 1.50472 * 131.52005 * 180.49212 * 14 13 12 22 22 H 0.96997 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47523 * 59.99596 * 9 7 2 24 24 H 1.09009 * 109.46943 * 299.99198 * 9 7 2 25 25 H 1.09008 * 109.47119 * 59.99864 * 10 9 7 26 26 H 1.08999 * 109.47082 * 299.99910 * 10 9 7 27 27 H 1.09012 * 109.46991 * 60.00222 * 11 10 9 28 28 H 1.08999 * 109.47501 * 300.00367 * 11 10 9 29 29 H 1.08010 * 125.49599 * 0.02614 * 13 12 11 30 30 H 1.08004 * 126.11385 * 359.87363 * 16 12 11 31 31 H 1.09002 * 109.55150 * 163.89201 * 19 17 15 32 32 H 1.09003 * 109.54981 * 284.08519 * 19 17 15 33 33 H 1.08999 * 109.12644 * 53.21618 * 20 19 17 34 34 H 1.08998 * 109.12458 * 172.31775 * 20 19 17 35 35 H 1.08997 * 109.58329 * 279.54137 * 21 14 13 36 36 H 1.09000 * 109.58042 * 39.81496 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 7 2.4322 -6.1006 -0.0049 13 6 2.9387 -6.6937 -1.1321 14 6 3.7708 -7.6659 -0.7728 15 6 3.7774 -7.6781 0.7058 16 6 2.9339 -6.6868 1.1049 17 6 4.5968 -8.6484 1.4427 18 8 4.7959 -8.5647 2.6368 19 6 5.1763 -9.7682 0.5894 20 6 5.7267 -9.1742 -0.7089 21 6 4.6000 -8.6211 -1.5879 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8882 25 1 2.8719 -3.6051 0.8873 26 1 2.8718 -3.6036 -0.8927 27 1 0.8533 -5.0443 -0.8932 28 1 0.8538 -5.0454 0.8868 29 1 2.7007 -6.4154 -2.1482 30 1 2.7062 -6.4170 2.1257 31 1 5.9806 -10.2629 1.1339 32 1 4.3946 -10.4915 0.3569 33 1 6.4181 -8.3669 -0.4673 34 1 6.2618 -9.9492 -1.2576 35 1 3.9740 -9.4424 -1.9366 36 1 5.0252 -8.0970 -2.4438 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135390199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:21 Heat of formation + Delta-G solvation = -35.159346 kcal Electronic energy + Delta-G solvation = -17054.740150 eV Core-core repulsion = 14309.816996 eV Total energy + Delta-G solvation = -2744.923154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31905 -39.79688 -37.00132 -35.98288 -34.24013 -31.62415 -31.05841 -28.50213 -28.09695 -25.56186 -23.16132 -22.85273 -21.97233 -20.70028 -19.21605 -18.65702 -17.73684 -16.63851 -16.50346 -16.09053 -15.88273 -15.51527 -15.30970 -14.96084 -14.69501 -14.36128 -14.12777 -13.84320 -13.37486 -13.27532 -13.09036 -12.72141 -12.62376 -12.45143 -12.21328 -11.90436 -11.68416 -11.64745 -11.53847 -11.28781 -10.59291 -10.52891 -9.41590 -9.20719 -8.24791 -6.35443 0.42921 1.38213 1.38882 1.49009 1.50618 1.93649 2.27796 2.38267 3.09165 3.34740 3.76834 3.92661 3.99984 4.11192 4.14255 4.15153 4.28995 4.41972 4.50869 4.66151 4.70955 4.76337 4.90756 4.93288 4.99924 5.07003 5.14317 5.29368 5.35399 5.42799 5.44781 5.63098 5.78489 5.89163 6.15732 6.18131 6.34994 6.74776 6.80220 7.34133 8.86464 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.038216 B = 0.003872 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.496834 B = 7229.194354 C = 7306.461812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.107 4.107 11 C 0.108 3.892 12 N -0.442 5.442 13 C -0.013 4.013 14 C -0.140 4.140 15 C -0.307 4.307 16 C 0.076 3.924 17 C 0.424 3.576 18 O -0.524 6.524 19 C -0.150 4.150 20 C -0.104 4.104 21 C -0.045 4.045 22 H 0.265 0.735 23 H 0.005 0.995 24 H 0.000 1.000 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.185 0.815 30 H 0.172 0.828 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.051 0.949 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.497 -18.861 -5.060 20.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.146 4.146 11 C -0.013 4.013 12 N -0.116 5.116 13 C -0.138 4.138 14 C -0.145 4.145 15 C -0.316 4.316 16 C -0.061 4.061 17 C 0.308 3.692 18 O -0.405 6.405 19 C -0.187 4.187 20 C -0.142 4.142 21 C -0.082 4.082 22 H 0.074 0.926 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.202 0.798 30 H 0.189 0.811 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.220 -18.444 -4.516 20.315 hybrid contribution -0.063 1.427 0.382 1.479 sum 7.157 -17.017 -4.134 18.918 Atomic orbital electron populations 1.70057 1.07560 1.27887 1.51382 1.25885 0.95751 1.03088 0.94632 0.85516 0.78616 0.78779 0.78581 1.19599 1.20613 1.19234 1.21633 0.93362 0.92543 1.50963 0.92765 1.18929 0.94150 0.92128 0.95797 1.21763 0.98574 0.93241 1.00991 1.22106 0.90353 0.83432 1.05439 1.44366 1.34994 1.26647 1.05605 1.21521 1.01834 0.98383 0.92054 1.20947 1.01478 1.00060 0.92050 1.21373 1.09456 1.04943 0.95819 1.21958 0.97272 0.94278 0.92549 1.22561 0.75329 0.84496 0.86823 1.90500 1.56218 1.75016 1.18735 1.22245 1.02714 0.96664 0.97091 1.21430 0.97675 1.01037 0.94018 1.20059 0.95137 0.96560 0.96438 0.92628 0.97695 0.98179 0.93601 0.92649 0.87637 0.88666 0.79751 0.81116 0.88827 0.86663 0.93019 0.87710 0.88864 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.41 9.11 25.60 0.23 -30.18 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.11 -4.11 5.48 30.59 0.17 -3.95 16 11 C 0.11 3.18 6.01 86.38 0.52 3.69 16 12 N -0.44 -12.47 2.71 -525.39 -1.42 -13.89 16 13 C -0.01 -0.32 11.29 82.70 0.93 0.61 16 14 C -0.14 -3.28 6.19 -18.56 -0.11 -3.39 16 15 C -0.31 -8.78 6.29 -18.97 -0.12 -8.90 16 16 C 0.08 2.26 11.43 83.69 0.96 3.22 16 17 C 0.42 11.94 7.10 28.43 0.20 12.14 16 18 O -0.52 -18.67 18.00 -3.23 -0.06 -18.73 16 19 C -0.15 -2.64 6.08 30.35 0.18 -2.45 16 20 C -0.10 -1.49 5.74 30.68 0.18 -1.31 16 21 C -0.04 -0.67 6.27 29.85 0.19 -0.48 16 22 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 23 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 25 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.11 2.80 8.13 -2.38 -0.02 2.78 16 28 H 0.09 2.69 8.13 -2.39 -0.02 2.67 16 29 H 0.19 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.17 4.84 8.06 -2.91 -0.02 4.82 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -68.41 306.10 5.81 -62.59 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.05 Total: 7.70 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 3.94 Total: -28.76 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -1.14 Total: -68.45 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.06 Total: -18.73 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.41 5.81 -62.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135390199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.434 kcal (2) G-P(sol) polarization free energy of solvation -68.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds