Wall clock time and date at job start Mon Mar 30 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47325 * 239.99685 * 3 2 1 5 5 H 1.48496 * 109.47425 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47183 * 119.99880 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34244 * 126.49377 * 265.02860 * 12 11 10 14 14 N 1.36809 * 109.93019 * 179.97438 * 13 12 11 15 15 H 0.96996 * 125.07031 * 180.02562 * 14 13 12 16 16 C 1.37818 * 109.86496 * 359.97438 * 14 13 12 17 17 C 1.39091 * 133.39788 * 180.02562 * 16 14 13 18 18 C 1.37718 * 119.95349 * 179.31004 * 17 16 14 19 19 C 1.39036 * 120.64733 * 0.56883 * 18 17 16 20 20 F 1.35101 * 119.83567 * 179.61339 * 19 18 17 21 21 C 1.37797 * 120.33327 * 359.63611 * 19 18 17 22 22 C 1.39675 * 119.62472 * 0.02562 * 21 19 18 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 29 29 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 30 30 H 1.07999 * 125.03505 * 359.92591 * 13 12 11 31 31 H 1.07999 * 120.02607 * 359.95992 * 17 16 14 32 32 H 1.07997 * 119.68021 * 180.20729 * 18 17 16 33 33 H 1.07997 * 120.18903 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4598 -6.1325 -0.0005 13 6 2.9067 -6.8002 -1.0760 14 7 3.7853 -7.7746 -0.6880 15 1 4.2397 -8.3862 -1.2881 16 6 3.9292 -7.7567 0.6825 17 6 4.6813 -8.5140 1.5744 18 6 4.6254 -8.2435 2.9236 19 6 3.8132 -7.2248 3.4091 20 9 3.7650 -6.9787 4.7366 21 6 3.0568 -6.4653 2.5432 22 6 3.1092 -6.7242 1.1717 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 0.8541 -5.0446 0.8903 29 1 0.8535 -5.0451 -0.8897 30 1 2.6153 -6.5986 -2.0962 31 1 5.3167 -9.3068 1.2081 32 1 5.2138 -8.8322 3.6118 33 1 2.4271 -5.6744 2.9229 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000145246391.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:38 Heat of formation + Delta-G solvation = -30.600212 kcal Electronic energy + Delta-G solvation = -16683.318506 eV Core-core repulsion = 13815.132745 eV Total energy + Delta-G solvation = -2868.185760 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.77155 -42.17848 -37.60776 -36.50380 -34.58380 -32.59035 -30.57030 -29.86524 -28.15877 -25.20981 -24.01757 -22.86971 -22.07213 -20.35915 -18.95676 -18.39295 -18.09107 -17.18773 -16.55019 -16.50358 -16.24975 -15.64900 -15.30029 -14.81808 -14.58252 -14.16788 -13.98561 -13.76775 -13.68949 -13.40868 -12.96616 -12.53999 -12.52679 -12.39122 -12.21161 -11.84920 -11.36552 -11.28523 -11.19647 -10.54323 -10.52306 -9.11279 -8.56152 -8.17725 -6.29284 0.02774 0.42550 1.39529 1.42958 1.50886 1.73412 2.24062 2.42191 2.73424 3.14285 3.34915 3.70396 3.89377 4.10247 4.16786 4.33493 4.44734 4.61352 4.65506 4.74051 4.85068 4.94867 5.01058 5.16528 5.24612 5.29679 5.29887 5.40488 5.56176 5.71742 5.74639 5.84893 5.90455 6.13103 6.29176 6.75944 6.87458 7.39573 8.93318 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.004694 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.327307 B = 5963.510507 C = 6587.103702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.086 4.086 11 C -0.037 4.037 12 C -0.193 4.193 13 C 0.075 3.925 14 N -0.576 5.576 15 H 0.436 0.564 16 C 0.078 3.922 17 C -0.087 4.087 18 C -0.135 4.135 19 C 0.050 3.950 20 F -0.154 7.154 21 C -0.129 4.129 22 C -0.104 4.104 23 H 0.264 0.736 24 H -0.002 1.002 25 H -0.013 1.013 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.205 0.795 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 -20.441 -0.911 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.123 4.123 11 C -0.075 4.075 12 C -0.200 4.200 13 C -0.052 4.052 14 N -0.181 5.181 15 H 0.277 0.723 16 C -0.030 4.030 17 C -0.107 4.107 18 C -0.154 4.154 19 C 0.030 3.970 20 F -0.133 7.133 21 C -0.149 4.149 22 C -0.109 4.109 23 H 0.072 0.928 24 H 0.016 0.984 25 H 0.006 0.994 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.221 0.779 31 H 0.188 0.812 32 H 0.182 0.818 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.910 -20.409 -0.989 22.709 hybrid contribution 0.002 1.174 0.317 1.216 sum 9.911 -19.234 -0.672 21.648 Atomic orbital electron populations 1.70089 1.07732 1.27793 1.51709 1.25965 0.95777 1.03251 0.94728 0.85533 0.78340 0.78240 0.79137 1.18970 1.20585 1.19539 1.21690 0.93390 0.92672 1.50557 0.92648 1.19045 0.94479 0.93066 0.94830 1.21372 0.97705 0.93454 0.99818 1.19849 0.95316 0.90551 1.01824 1.20428 1.05667 1.02162 0.91706 1.22090 0.92981 0.90175 0.99927 1.41653 1.39976 1.31836 1.04625 0.72289 1.18476 1.00723 0.98852 0.84987 1.20200 0.99765 1.00353 0.90422 1.21032 1.00205 0.97750 0.96454 1.17579 1.02403 1.00046 0.76952 1.91440 1.95767 1.94156 1.31927 1.20530 1.01201 1.00747 0.92432 1.19093 1.00715 0.98582 0.92493 0.92759 0.98394 0.99448 0.92986 0.94816 0.93138 0.90546 0.77854 0.81250 0.81791 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 2 C 0.00 0.02 5.46 84.65 0.46 0.49 16 3 Si 0.96 45.41 29.54 68.60 2.03 47.43 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -32.28 9.11 25.60 0.23 -32.05 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.73 5.14 30.60 0.16 -3.58 16 11 C -0.04 -1.33 5.75 29.85 0.17 -1.16 16 12 C -0.19 -5.81 5.57 -18.62 -0.10 -5.91 16 13 C 0.08 1.61 11.73 83.00 0.97 2.59 16 14 N -0.58 -9.97 6.07 -187.58 -1.14 -11.11 16 15 H 0.44 3.79 8.96 -92.71 -0.83 2.96 16 16 C 0.08 1.77 7.27 38.99 0.28 2.06 16 17 C -0.09 -1.55 10.06 22.35 0.22 -1.33 16 18 C -0.13 -2.77 9.99 22.34 0.22 -2.55 16 19 C 0.05 1.42 7.29 22.36 0.16 1.58 16 20 F -0.15 -4.60 17.26 44.97 0.78 -3.82 16 21 C -0.13 -4.16 10.08 22.51 0.23 -3.93 16 22 C -0.10 -3.16 6.35 -20.20 -0.13 -3.28 16 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 24 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.20 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.12 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -72.63 292.34 5.27 -67.36 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 0.29 Total: 3.61 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 3.04 Total: -45.68 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.85 Total: -68.90 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.78 Total: -3.82 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -72.63 5.27 -67.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145246391.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.762 kcal (2) G-P(sol) polarization free energy of solvation -72.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds