Wall clock time and date at job start Mon Mar 30 2020 06:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48503 * 109.46825 * 270.00103 * 3 2 1 5 5 H 1.48503 * 109.47442 * 29.99538 * 3 2 1 6 6 H 1.48494 * 109.47444 * 150.00027 * 3 2 1 7 7 C 1.37877 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00597 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47182 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.46437 * 110.99851 * 169.99969 * 11 10 9 13 13 C 1.53385 * 108.64968 * 72.16749 * 12 11 10 14 14 C 1.53038 * 107.93298 * 68.24451 * 13 12 11 15 15 H 1.08996 * 109.41061 * 72.74106 * 14 13 12 16 16 O 1.42896 * 109.44092 * 192.64918 * 14 13 12 17 17 C 1.50812 * 109.65876 * 312.70276 * 14 13 12 18 18 C 1.38616 * 118.12060 * 195.39062 * 17 14 13 19 19 C 1.38055 * 120.48310 * 180.31012 * 18 17 14 20 20 C 1.38311 * 119.88867 * 0.38787 * 19 18 17 21 21 C 1.37809 * 119.94995 * 359.31184 * 20 19 18 22 22 C 1.38373 * 122.01095 * 15.62622 * 17 14 13 23 23 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46866 * 59.99680 * 9 7 2 25 25 H 1.09001 * 109.46985 * 300.00046 * 9 7 2 26 26 H 1.08999 * 109.47311 * 60.00161 * 10 9 7 27 27 H 1.09001 * 109.47369 * 300.00020 * 10 9 7 28 28 H 1.09001 * 109.60657 * 312.41687 * 12 11 10 29 29 H 1.08997 * 109.60308 * 191.91465 * 12 11 10 30 30 H 1.09004 * 109.76927 * 308.63433 * 13 12 11 31 31 H 1.08997 * 109.81100 * 187.87701 * 13 12 11 32 32 H 0.96701 * 113.99992 * 180.19659 * 16 14 13 33 33 H 1.07992 * 119.75624 * 0.29798 * 18 17 14 34 34 H 1.08002 * 120.05129 * 180.10071 * 19 18 17 35 35 H 1.07992 * 120.02356 * 179.60434 * 20 19 18 36 36 H 1.08003 * 119.78981 * 180.23638 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4146 -6.0618 -0.2375 13 6 3.2686 -6.2786 1.0180 14 6 2.3487 -6.7823 2.1325 15 1 2.0648 -7.8147 1.9290 16 8 3.0364 -6.7158 3.3833 17 6 1.1101 -5.9241 2.1946 18 6 0.3144 -6.0062 3.3266 19 6 -0.8339 -5.2472 3.4321 20 6 -1.1999 -4.4036 2.3989 21 6 -0.4104 -4.3120 1.2731 22 6 0.7538 -5.0745 1.1621 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8894 28 1 3.0615 -5.8396 -1.0862 29 1 1.8324 -6.9599 -0.4435 30 1 3.7295 -5.3373 1.3175 31 1 4.0419 -7.0196 0.8153 32 1 2.5136 -7.0231 4.1365 33 1 0.5947 -6.6690 4.1318 34 1 -1.4479 -5.3155 4.3180 35 1 -2.1011 -3.8137 2.4765 36 1 -0.6966 -3.6496 0.4695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163081214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:18 Heat of formation + Delta-G solvation = -18.954065 kcal Electronic energy + Delta-G solvation = -18266.647806 eV Core-core repulsion = 15522.427366 eV Total energy + Delta-G solvation = -2744.220441 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46604 -36.81996 -36.65935 -33.47950 -31.97156 -30.04526 -29.82601 -28.83147 -25.02917 -23.77159 -22.88607 -21.45971 -21.18264 -18.95619 -17.62204 -16.47331 -16.18637 -15.73490 -15.35760 -14.50464 -14.31892 -13.98757 -13.97217 -13.49483 -13.05466 -12.60092 -12.30077 -12.15606 -12.04879 -11.57846 -11.41595 -11.31679 -10.96299 -10.84017 -10.59316 -10.46619 -10.13830 -9.82272 -9.49963 -9.07713 -8.81379 -8.45964 -8.21456 -7.40315 -6.01693 -4.03188 1.69484 1.81808 3.31556 3.37826 3.41301 4.03614 4.16038 4.44123 4.53138 4.82301 4.90481 5.06598 5.22830 5.35151 5.46200 5.47605 5.54883 5.70978 5.83310 5.92221 5.97207 6.12378 6.20801 6.25492 6.38720 6.45835 6.72679 6.79965 6.90945 6.97128 7.20634 7.41388 7.61149 7.70908 7.76223 7.94216 8.01385 8.39870 9.02046 9.59914 11.09637 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.006907 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.058785 B = 4053.095487 C = 4565.121108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.015 3.985 10 C 0.065 3.935 11 N -0.504 5.504 12 C 0.060 3.940 13 C -0.152 4.152 14 C 0.154 3.846 15 H 0.061 0.939 16 O -0.559 6.559 17 C -0.167 4.167 18 C -0.112 4.112 19 C -0.141 4.141 20 C -0.108 4.108 21 C -0.099 4.099 22 C 0.134 3.866 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.035 0.965 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.373 0.627 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 -13.913 4.421 14.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.022 4.022 10 C -0.058 4.058 11 N -0.220 5.220 12 C -0.068 4.068 13 C -0.191 4.191 14 C 0.096 3.904 15 H 0.079 0.921 16 O -0.365 6.365 17 C -0.171 4.171 18 C -0.131 4.131 19 C -0.159 4.159 20 C -0.127 4.127 21 C -0.119 4.119 22 C 0.037 3.963 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.221 0.779 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.915 -13.527 3.592 14.025 hybrid contribution 0.474 0.755 1.029 1.362 sum 1.390 -12.772 4.621 13.653 Atomic orbital electron populations 1.69951 1.05959 1.26609 1.50571 1.24957 0.94852 0.99114 0.95230 0.86600 0.79866 0.83482 0.78097 1.20634 1.21199 1.19935 1.21150 0.92975 0.90928 1.50971 0.92823 1.19510 0.94284 0.90103 0.98279 1.22455 0.96691 0.86949 0.99724 1.58878 1.26101 1.04355 1.32661 1.22181 0.94115 0.94068 0.96453 1.22193 0.98492 1.03120 0.95295 1.20529 0.89071 0.96196 0.84625 0.92136 1.86559 1.43887 1.89247 1.16847 1.20492 0.98225 1.03313 0.95020 1.20620 0.95408 1.00305 0.96734 1.20902 0.97595 0.98373 0.99053 1.21031 0.99717 0.98186 0.93745 1.21532 0.92751 0.98180 0.99419 1.18473 0.94060 0.95416 0.88314 0.92982 0.95677 0.94731 0.95127 0.91290 0.89498 0.90646 0.90138 0.90595 0.77894 0.87176 0.86627 0.86018 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.39 3.74 -27.88 -0.10 0.29 16 10 C 0.07 1.40 4.51 -3.83 -0.02 1.38 16 11 N -0.50 -9.40 4.58 -171.28 -0.78 -10.19 16 12 C 0.06 0.88 5.82 -3.88 -0.02 0.86 16 13 C -0.15 -2.18 5.68 -26.51 -0.15 -2.33 16 14 C 0.15 2.19 3.58 -27.81 -0.10 2.09 16 15 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 16 O -0.56 -7.82 13.19 -35.23 -0.46 -8.28 16 17 C -0.17 -2.74 5.56 -104.38 -0.58 -3.32 16 18 C -0.11 -1.63 9.22 -39.51 -0.36 -1.99 16 19 C -0.14 -2.09 10.05 -39.62 -0.40 -2.49 16 20 C -0.11 -1.83 10.04 -39.71 -0.40 -2.23 16 21 C -0.10 -1.94 7.37 -39.23 -0.29 -2.23 16 22 C 0.13 2.53 5.06 -83.85 -0.42 2.10 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.02 0.69 8.01 -51.93 -0.42 0.27 16 25 H 0.03 0.93 5.09 -51.93 -0.26 0.67 16 26 H 0.03 0.68 6.89 -51.93 -0.36 0.32 16 27 H 0.07 1.41 7.90 -51.93 -0.41 1.00 16 28 H 0.09 1.16 7.88 -51.93 -0.41 0.75 16 29 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.08 1.35 6.62 -51.93 -0.34 1.01 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.37 3.70 7.49 45.56 0.34 4.04 16 33 H 0.11 1.21 6.78 -52.49 -0.36 0.86 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.14 3.10 6.21 -52.48 -0.33 2.77 16 LS Contribution 286.55 15.07 4.32 4.32 Total: -1.00 -31.26 286.55 -8.67 -39.93 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.20 Total: 4.51 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -3.26 Total: -21.31 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.05 Total: -35.85 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.46 Total: -8.28 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.26 -8.67 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163081214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.979 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds