Wall clock time and date at job start Mon Mar 30 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48503 * 109.46825 * 270.00103 * 3 2 1 5 5 H 1.48503 * 109.47442 * 29.99538 * 3 2 1 6 6 H 1.48494 * 109.47444 * 150.00027 * 3 2 1 7 7 C 1.37877 * 120.00478 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00597 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99705 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47182 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.46437 * 110.99851 * 169.99969 * 11 10 9 13 13 C 1.53385 * 108.64968 * 72.16749 * 12 11 10 14 14 C 1.53038 * 107.93298 * 68.24451 * 13 12 11 15 15 H 1.08996 * 109.41061 * 72.74106 * 14 13 12 16 16 O 1.42896 * 109.44092 * 192.64918 * 14 13 12 17 17 C 1.50812 * 109.65876 * 312.70276 * 14 13 12 18 18 C 1.38616 * 118.12060 * 195.39062 * 17 14 13 19 19 C 1.38055 * 120.48310 * 180.31012 * 18 17 14 20 20 C 1.38311 * 119.88867 * 0.38787 * 19 18 17 21 21 C 1.37809 * 119.94995 * 359.31184 * 20 19 18 22 22 C 1.38373 * 122.01095 * 15.62622 * 17 14 13 23 23 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46866 * 59.99680 * 9 7 2 25 25 H 1.09001 * 109.46985 * 300.00046 * 9 7 2 26 26 H 1.08999 * 109.47311 * 60.00161 * 10 9 7 27 27 H 1.09001 * 109.47369 * 300.00020 * 10 9 7 28 28 H 1.09001 * 109.60657 * 312.41687 * 12 11 10 29 29 H 1.08997 * 109.60308 * 191.91465 * 12 11 10 30 30 H 1.09004 * 109.76927 * 308.63433 * 13 12 11 31 31 H 1.08997 * 109.81100 * 187.87701 * 13 12 11 32 32 H 0.96701 * 113.99992 * 180.19659 * 16 14 13 33 33 H 1.07992 * 119.75624 * 0.29798 * 18 17 14 34 34 H 1.08002 * 120.05129 * 180.10071 * 19 18 17 35 35 H 1.07992 * 120.02356 * 179.60434 * 20 19 18 36 36 H 1.08003 * 119.78981 * 180.23638 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4146 -6.0618 -0.2375 13 6 3.2686 -6.2786 1.0180 14 6 2.3487 -6.7823 2.1325 15 1 2.0648 -7.8147 1.9290 16 8 3.0364 -6.7158 3.3833 17 6 1.1101 -5.9241 2.1946 18 6 0.3144 -6.0062 3.3266 19 6 -0.8339 -5.2472 3.4321 20 6 -1.1999 -4.4036 2.3989 21 6 -0.4104 -4.3120 1.2731 22 6 0.7538 -5.0745 1.1621 23 1 -0.4850 0.8401 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8720 -3.6043 -0.8894 28 1 3.0615 -5.8396 -1.0862 29 1 1.8324 -6.9599 -0.4435 30 1 3.7295 -5.3373 1.3175 31 1 4.0419 -7.0196 0.8153 32 1 2.5136 -7.0231 4.1365 33 1 0.5947 -6.6690 4.1318 34 1 -1.4479 -5.3155 4.3180 35 1 -2.1011 -3.8137 2.4765 36 1 -0.6966 -3.6496 0.4695 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163081214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:17 Heat of formation + Delta-G solvation = -40.551536 kcal Electronic energy + Delta-G solvation = -18267.584343 eV Core-core repulsion = 15522.427366 eV Total energy + Delta-G solvation = -2745.156977 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75273 -38.02367 -37.92254 -35.42224 -33.51954 -31.43065 -31.27527 -30.33158 -26.84752 -25.16389 -24.12609 -22.97813 -22.77086 -20.24339 -18.78832 -18.53289 -17.39602 -17.05733 -16.73086 -16.48238 -15.77198 -15.41528 -15.23218 -14.88607 -14.33120 -14.16419 -13.88099 -13.58054 -13.32283 -13.17268 -12.91114 -12.84086 -12.57918 -12.44327 -12.22048 -11.98156 -11.69742 -11.38178 -11.15043 -10.96265 -10.56815 -10.20594 -9.60838 -8.78729 -8.20926 -6.31332 0.40615 0.51651 1.37957 1.39350 1.50149 2.38174 2.74433 2.95834 3.12600 3.38612 3.67423 3.78067 3.93747 4.13510 4.25794 4.29980 4.38139 4.46854 4.51754 4.62526 4.72488 4.74780 4.81941 4.90723 5.02757 5.11251 5.18150 5.41019 5.46694 5.51211 5.63612 5.69010 5.76269 5.94654 6.13816 6.24990 6.56904 6.78987 6.83761 7.36463 8.90705 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.006907 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.058785 B = 4053.095487 C = 4565.121108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.005 3.995 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.085 3.915 11 N -0.516 5.516 12 C 0.058 3.942 13 C -0.149 4.149 14 C 0.157 3.843 15 H 0.092 0.908 16 O -0.571 6.571 17 C -0.172 4.172 18 C -0.107 4.107 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.132 4.132 22 C 0.108 3.892 23 H 0.263 0.737 24 H -0.007 1.007 25 H 0.017 0.983 26 H 0.019 0.981 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.392 0.608 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.128 0.872 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -15.508 5.971 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.040 4.040 11 N -0.233 5.233 12 C -0.069 4.069 13 C -0.188 4.188 14 C 0.099 3.901 15 H 0.109 0.891 16 O -0.380 6.380 17 C -0.175 4.175 18 C -0.125 4.125 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.152 4.152 22 C 0.011 3.989 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.035 0.965 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.242 0.758 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.146 0.854 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.097 -15.149 5.153 16.138 hybrid contribution 0.036 1.183 0.605 1.329 sum 2.133 -13.966 5.757 15.256 Atomic orbital electron populations 1.70092 1.07603 1.27677 1.51201 1.25889 0.95773 1.03036 0.94620 0.85485 0.78612 0.78612 0.78566 1.19581 1.20608 1.19074 1.21589 0.93352 0.92390 1.51165 0.92594 1.19299 0.94419 0.91533 0.95885 1.22032 0.95293 0.87346 0.99297 1.58737 1.26765 1.04266 1.33519 1.22340 0.94058 0.93180 0.97292 1.22164 0.99033 1.02481 0.95154 1.20586 0.87755 0.97033 0.84752 0.89059 1.86539 1.44485 1.89536 1.17444 1.20888 0.99402 1.02597 0.94606 1.21161 0.94364 0.99955 0.97011 1.21316 0.98009 0.96839 0.99128 1.21233 0.99853 0.99127 0.93819 1.21399 0.94732 0.99295 0.99732 1.18620 0.94005 0.96749 0.89478 0.92776 0.98881 0.96528 0.96303 0.90725 0.88389 0.88643 0.93122 0.87750 0.75776 0.82675 0.83041 0.85444 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.41 3.74 29.85 0.11 1.52 16 10 C 0.08 3.78 4.51 86.30 0.39 4.17 16 11 N -0.52 -19.74 4.58 -695.81 -3.19 -22.93 16 12 C 0.06 1.64 5.82 86.52 0.50 2.14 16 13 C -0.15 -3.98 5.68 30.74 0.17 -3.80 16 14 C 0.16 3.95 3.58 29.90 0.11 4.06 16 15 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 16 O -0.57 -13.87 13.19 -148.98 -1.97 -15.84 16 17 C -0.17 -5.30 5.56 -19.71 -0.11 -5.41 16 18 C -0.11 -2.74 9.22 22.32 0.21 -2.54 16 19 C -0.13 -3.69 10.05 22.24 0.22 -3.47 16 20 C -0.12 -4.21 10.04 22.19 0.22 -3.99 16 21 C -0.13 -5.46 7.37 22.50 0.17 -5.30 16 22 C 0.11 4.13 5.06 38.30 0.19 4.33 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H -0.01 -0.43 8.01 -2.39 -0.02 -0.45 16 25 H 0.02 0.97 5.09 -2.39 -0.01 0.96 16 26 H 0.02 0.87 6.89 -2.39 -0.02 0.85 16 27 H 0.07 3.15 7.90 -2.39 -0.02 3.13 16 28 H 0.10 2.49 7.88 -2.39 -0.02 2.47 16 29 H 0.10 2.31 8.11 -2.39 -0.02 2.29 16 30 H 0.05 1.66 6.62 -2.39 -0.02 1.64 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.39 5.94 7.49 -74.06 -0.55 5.38 16 33 H 0.16 2.55 6.78 -2.91 -0.02 2.53 16 34 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.10 5.00 6.21 -2.91 -0.02 4.98 16 Total: -1.00 -70.66 286.55 0.57 -70.09 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.53 Total: 17.39 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 2.88 Total: -39.29 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.90 Total: -79.49 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.97 Total: -15.84 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -70.66 0.57 -70.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163081214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.538 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds