Wall clock time and date at job start Mon Mar 30 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86791 * 120.00632 * 2 1 4 4 H 1.48505 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47118 * 299.99580 * 3 2 1 6 6 H 1.48500 * 109.47561 * 59.99891 * 3 2 1 7 7 C 1.38638 * 119.99600 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00263 * 180.02562 * 7 2 1 9 9 O 1.34803 * 119.99842 * 359.97438 * 7 2 1 10 10 C 1.35798 * 116.99913 * 185.06568 * 9 7 2 11 11 C 1.38711 * 120.10463 * 354.40141 * 10 9 7 12 12 C 1.38185 * 120.01007 * 180.27579 * 11 10 9 13 13 C 1.38344 * 120.20333 * 359.69734 * 12 11 10 14 14 C 1.38203 * 120.20385 * 0.02562 * 13 12 11 15 15 C 1.38746 * 119.99155 * 359.97438 * 14 13 12 16 16 N 1.39788 * 120.10131 * 179.97438 * 15 14 13 17 17 C 1.46503 * 119.99882 * 0.02562 * 16 15 14 18 18 C 1.54879 * 110.48570 * 269.77225 * 17 16 15 19 19 C 1.54894 * 102.74896 * 203.38161 * 18 17 16 20 20 C 1.54257 * 104.19380 * 37.94363 * 19 18 17 21 21 C 1.53876 * 106.60108 * 336.38990 * 20 19 18 22 22 H 0.97003 * 119.99558 * 0.02562 * 1 2 3 23 23 H 1.08005 * 119.99487 * 359.97334 * 11 10 9 24 24 H 1.07994 * 119.89847 * 179.72368 * 12 11 10 25 25 H 1.08002 * 119.89455 * 180.02562 * 13 12 11 26 26 H 1.07994 * 120.00184 * 180.02562 * 14 13 12 27 27 H 0.97001 * 120.00314 * 180.02562 * 16 15 14 28 28 H 1.08994 * 110.53876 * 32.38719 * 17 16 15 29 29 H 1.08998 * 110.75969 * 85.06692 * 18 17 16 30 30 H 1.09004 * 110.76057 * 321.69290 * 18 17 16 31 31 H 1.09000 * 110.48220 * 279.26368 * 19 18 17 32 32 H 1.09007 * 110.48803 * 156.62432 * 19 18 17 33 33 H 1.08999 * 110.03513 * 95.68167 * 20 19 18 34 34 H 1.09003 * 110.03128 * 217.05892 * 20 19 18 35 35 H 1.09000 * 110.02843 * 119.28895 * 21 20 19 36 36 H 1.08997 * 110.03309 * 240.66659 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.7099 1.3461 -0.0006 5 1 1.8913 2.3963 -1.2126 6 1 1.8912 2.3964 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3680 0.0016 10 6 2.0702 -3.5046 0.1089 11 6 3.4557 -3.4406 0.0943 12 6 4.2022 -4.5989 0.1979 13 6 3.5720 -5.8242 0.3227 14 6 2.1921 -5.8973 0.3439 15 6 1.4345 -4.7396 0.2405 16 7 0.0386 -4.8109 0.2612 17 6 -0.6266 -6.1096 0.3928 18 6 -0.8921 -6.7265 -1.0028 19 6 -2.0681 -7.6968 -0.7294 20 6 -2.9490 -6.9458 0.2901 21 6 -2.0325 -5.9366 1.0037 22 1 -0.4850 0.8401 -0.0004 23 1 3.9512 -2.4859 -0.0029 24 1 5.2808 -4.5475 0.1819 25 1 4.1603 -6.7263 0.4037 26 1 1.7036 -6.8555 0.4419 27 1 -0.4897 -4.0006 0.1884 28 1 -0.0269 -6.7865 1.0013 29 1 -0.0168 -7.2707 -1.3575 30 1 -1.1848 -5.9563 -1.7164 31 1 -1.7012 -8.6301 -0.3022 32 1 -2.6252 -7.8890 -1.6465 33 1 -3.7525 -6.4204 -0.2261 34 1 -3.3660 -7.6480 1.0121 35 1 -2.3912 -4.9214 0.8337 36 1 -2.0046 -6.1483 2.0726 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167852543.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:20 Heat of formation + Delta-G solvation = -28.938360 kcal Electronic energy + Delta-G solvation = -17726.214230 eV Core-core repulsion = 14981.560838 eV Total energy + Delta-G solvation = -2744.653392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88171 -39.29025 -37.87005 -35.08780 -34.17777 -30.69188 -30.19829 -29.56750 -27.40143 -27.21437 -23.44136 -22.59980 -21.33285 -20.99304 -19.66797 -19.06040 -17.42244 -17.07625 -16.30863 -16.23688 -15.67997 -15.55765 -15.33339 -14.84408 -14.48418 -14.25152 -14.12088 -13.50752 -13.42969 -12.96986 -12.70176 -12.39943 -12.33631 -12.19246 -12.07390 -12.05924 -11.91428 -11.60854 -11.31687 -11.17273 -10.79946 -10.67596 -9.20740 -8.41412 -7.96655 -6.02559 0.73916 0.92402 1.35258 1.43051 1.52500 2.19806 2.69471 2.92798 3.28028 3.55130 3.68162 3.81218 3.99042 4.23427 4.38045 4.45577 4.53248 4.55369 4.62302 4.66817 4.74641 4.82748 4.94984 5.03705 5.09255 5.16295 5.20379 5.22713 5.31537 5.35324 5.48657 5.53712 5.74352 5.92318 6.05027 6.24460 6.72314 6.89693 7.05486 7.90312 8.82297 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.021639 B = 0.006576 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.640317 B = 4256.952169 C = 5369.440285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.014 2.986 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.402 4.402 8 H 0.094 0.906 9 O -0.232 6.232 10 C 0.042 3.958 11 C -0.211 4.211 12 C -0.138 4.138 13 C -0.139 4.139 14 C -0.168 4.168 15 C 0.151 3.849 16 N -0.746 5.746 17 C 0.147 3.853 18 C -0.140 4.140 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.133 4.133 22 H 0.269 0.731 23 H 0.113 0.887 24 H 0.135 0.865 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.391 0.609 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.533 -14.125 0.703 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.834 3.166 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.479 4.479 8 H 0.111 0.889 9 O -0.140 6.140 10 C -0.009 4.009 11 C -0.231 4.231 12 C -0.158 4.158 13 C -0.158 4.158 14 C -0.191 4.191 15 C 0.049 3.951 16 N -0.376 5.376 17 C 0.042 3.958 18 C -0.179 4.179 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.171 4.171 22 H 0.078 0.922 23 H 0.130 0.870 24 H 0.153 0.847 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.224 0.776 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.981 -14.147 0.714 14.199 hybrid contribution 0.093 1.667 -0.112 1.673 sum -0.887 -12.480 0.603 12.526 Atomic orbital electron populations 1.70180 1.07676 1.28204 1.50016 1.26419 0.96860 1.02282 0.96583 0.84584 0.78172 0.75438 0.78375 1.17877 1.19548 1.19546 1.21727 0.92229 0.81763 1.52143 0.88900 1.83831 1.35027 1.11868 1.83285 1.19502 0.91602 0.87253 1.02532 1.21089 0.92669 0.99899 1.09428 1.20893 0.99768 0.91691 1.03468 1.20945 0.93658 0.97786 1.03422 1.20605 0.94152 0.95573 1.08818 1.17498 0.84833 0.91199 1.01535 1.44692 1.02088 1.08372 1.82446 1.21896 0.93192 0.84282 0.96388 1.22975 0.99258 0.98667 0.96981 1.22293 0.95473 0.98053 0.99400 1.22069 0.97495 0.97498 0.98344 1.22401 0.94208 0.99883 1.00608 0.92248 0.86950 0.84747 0.83427 0.83972 0.77551 0.89196 0.91247 0.93370 0.89782 0.90735 0.91892 0.89758 0.93167 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.79 13.67 21.61 0.30 -56.50 16 2 C -0.02 -1.44 5.49 84.83 0.47 -0.97 16 3 Si 1.01 44.17 29.55 68.60 2.03 46.20 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.40 -23.89 9.49 67.92 0.64 -23.25 16 8 H 0.09 5.19 5.21 -2.91 -0.02 5.17 16 9 O -0.23 -13.97 9.01 -22.99 -0.21 -14.17 16 10 C 0.04 2.17 6.67 22.69 0.15 2.32 16 11 C -0.21 -9.68 9.16 22.37 0.20 -9.47 16 12 C -0.14 -5.06 10.04 22.28 0.22 -4.83 16 13 C -0.14 -4.52 10.04 22.29 0.22 -4.30 16 14 C -0.17 -5.88 9.22 22.38 0.21 -5.68 16 15 C 0.15 6.53 6.67 38.30 0.26 6.79 16 16 N -0.75 -29.63 5.33 -313.43 -1.67 -31.30 16 17 C 0.15 4.28 2.93 46.06 0.14 4.41 16 18 C -0.14 -3.61 6.58 31.88 0.21 -3.40 16 19 C -0.11 -2.15 6.83 31.67 0.22 -1.93 16 20 C -0.12 -2.27 6.80 31.32 0.21 -2.06 16 21 C -0.13 -3.41 6.53 31.32 0.20 -3.20 16 22 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 23 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 24 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 25 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 26 H 0.14 4.02 6.20 -2.91 -0.02 4.01 16 27 H 0.39 17.83 7.73 -92.71 -0.72 17.11 16 28 H 0.09 2.39 6.41 -2.39 -0.02 2.37 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.50 7.73 -2.39 -0.02 1.48 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.07 295.66 4.17 -64.90 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.37 Total: 36.44 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 3.35 Total: -45.57 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -1.37 Total: -87.79 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.21 Total: -14.17 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.07 4.17 -64.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167852543.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.963 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds