Wall clock time and date at job start Mon Mar 30 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.36879 * 125.06285 * 264.70068 * 12 11 10 14 14 C 1.34219 * 109.91579 * 179.81778 * 13 12 11 15 15 C 1.46503 * 106.99252 * 0.42831 * 14 13 12 16 16 C 1.37705 * 125.06114 * 85.00109 * 12 11 10 17 17 C 1.39125 * 133.41148 * 0.02562 * 16 12 11 18 18 C 1.37748 * 119.96227 * 179.97438 * 17 16 12 19 19 C 1.38789 * 120.69529 * 0.07494 * 18 17 16 20 20 C 1.37863 * 120.35473 * 359.94019 * 19 18 17 21 21 F 1.35101 * 120.19819 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08004 * 125.04253 * 359.97438 * 13 12 11 30 30 H 1.07997 * 126.49811 * 180.16402 * 14 13 12 31 31 H 1.07995 * 120.01750 * 359.97438 * 17 16 12 32 32 H 1.08010 * 119.65121 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.82108 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 2.8640 -6.7656 -1.1153 14 6 3.7338 -7.7266 -0.7670 15 6 3.8625 -7.6795 0.6916 16 6 3.0220 -6.6380 1.1231 17 6 2.9322 -6.3497 2.4811 18 6 3.6636 -7.0824 3.3898 19 6 4.4950 -8.1098 2.9661 20 6 4.6000 -8.4131 1.6254 21 9 5.4108 -9.4134 1.2164 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 2.5528 -6.5475 -2.1263 30 1 4.2393 -8.4083 -1.4350 31 1 2.2896 -5.5518 2.8228 32 1 3.5898 -6.8546 4.4430 33 1 5.0624 -8.6750 3.6907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213058530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:32 Heat of formation + Delta-G solvation = -3.446694 kcal Electronic energy + Delta-G solvation = -16808.961966 eV Core-core repulsion = 13941.953670 eV Total energy + Delta-G solvation = -2867.008296 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.71766 -41.16813 -36.91527 -34.71365 -32.73768 -30.93193 -29.54655 -28.68399 -26.51118 -23.64136 -22.51986 -21.76812 -20.57988 -20.02929 -17.46459 -16.80070 -16.25813 -15.81791 -15.55743 -15.28107 -14.77051 -14.51074 -14.29484 -14.07815 -13.15631 -12.85064 -12.64324 -12.46382 -12.11218 -11.66629 -11.43102 -11.30384 -11.29203 -10.92104 -10.82811 -10.63834 -9.94337 -9.69063 -9.38154 -9.19377 -8.45458 -8.21197 -7.46957 -6.10358 -4.13407 1.05667 1.56924 2.78447 2.97422 3.26387 3.33066 3.36782 3.80373 4.38356 4.38830 4.70495 4.86938 4.96115 5.15297 5.24710 5.26296 5.43422 5.56554 5.66821 5.76032 5.79487 5.92405 6.13794 6.28481 6.34618 6.46741 6.53437 6.72733 6.85033 6.87706 7.28956 7.42921 7.50521 7.61228 7.87372 8.29181 8.92704 9.51691 11.00832 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.035396 B = 0.004380 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.857531 B = 6391.300498 C = 6656.488284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.125 4.125 11 C 0.103 3.897 12 N -0.471 5.471 13 C 0.063 3.937 14 C -0.208 4.208 15 C -0.148 4.148 16 C 0.126 3.874 17 C -0.130 4.130 18 C -0.081 4.081 19 C -0.187 4.187 20 C 0.137 3.863 21 F -0.143 7.143 22 H 0.262 0.738 23 H 0.018 0.982 24 H 0.019 0.981 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.170 0.830 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 -15.193 2.470 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.163 4.163 11 C -0.017 4.017 12 N -0.152 5.152 13 C -0.064 4.064 14 C -0.233 4.233 15 C -0.154 4.154 16 C 0.018 3.982 17 C -0.150 4.150 18 C -0.101 4.101 19 C -0.207 4.207 20 C 0.117 3.883 21 F -0.121 7.121 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.187 0.813 30 H 0.163 0.837 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.690 -14.833 2.405 15.742 hybrid contribution 0.559 0.861 -0.165 1.040 sum 5.249 -13.972 2.240 15.093 Atomic orbital electron populations 1.69952 1.06067 1.26808 1.50571 1.25009 0.94861 0.99334 0.95094 0.86573 0.79876 0.83275 0.78196 1.20585 1.21117 1.19822 1.21177 0.93062 0.90830 1.51039 0.92646 1.19047 0.93745 0.91031 0.97479 1.22066 0.99781 0.92885 1.01581 1.22227 0.90557 0.84955 1.03931 1.44458 1.37703 1.28795 1.04212 1.21905 0.98307 0.94448 0.91724 1.21497 1.05626 1.04027 0.92153 1.19085 1.02319 0.99769 0.94221 1.18010 0.96426 0.94954 0.88803 1.20183 1.03214 1.02332 0.89316 1.20560 0.95631 0.94609 0.99266 1.20768 1.04455 1.02078 0.93389 1.17033 0.91948 0.87441 0.91897 1.91443 1.70783 1.58526 1.91362 0.92871 0.96343 0.96310 0.92593 0.92599 0.89272 0.89767 0.81255 0.83654 0.85386 0.84940 0.85150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.41 5.48 -26.74 -0.15 -2.56 16 11 C 0.10 1.61 6.00 -4.04 -0.02 1.58 16 12 N -0.47 -7.16 2.78 -114.42 -0.32 -7.48 16 13 C 0.06 0.84 11.28 -16.72 -0.19 0.65 16 14 C -0.21 -2.90 11.08 -37.67 -0.42 -3.32 16 15 C -0.15 -2.30 6.36 -105.09 -0.67 -2.96 16 16 C 0.13 1.97 6.81 -84.00 -0.57 1.40 16 17 C -0.13 -1.82 9.98 -39.43 -0.39 -2.22 16 18 C -0.08 -0.98 10.01 -39.56 -0.40 -1.38 16 19 C -0.19 -2.34 10.01 -39.51 -0.40 -2.74 16 20 C 0.14 1.99 7.34 -39.14 -0.29 1.70 16 21 F -0.14 -2.06 17.28 2.25 0.04 -2.02 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 30 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -30.19 293.24 -8.37 -38.56 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.19 Total: -1.83 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -4.04 Total: -22.52 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.42 Total: -32.84 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.19 -8.37 -38.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213058530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.113 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds