Wall clock time and date at job start Mon Mar 30 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.36879 * 125.06285 * 264.70068 * 12 11 10 14 14 C 1.34219 * 109.91579 * 179.81778 * 13 12 11 15 15 C 1.46503 * 106.99252 * 0.42831 * 14 13 12 16 16 C 1.37705 * 125.06114 * 85.00109 * 12 11 10 17 17 C 1.39125 * 133.41148 * 0.02562 * 16 12 11 18 18 C 1.37748 * 119.96227 * 179.97438 * 17 16 12 19 19 C 1.38789 * 120.69529 * 0.07494 * 18 17 16 20 20 C 1.37863 * 120.35473 * 359.94019 * 19 18 17 21 21 F 1.35101 * 120.19819 * 179.97438 * 20 19 18 22 22 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 24 24 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 25 25 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 26 26 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 27 27 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 28 28 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 29 29 H 1.08004 * 125.04253 * 359.97438 * 13 12 11 30 30 H 1.07997 * 126.49811 * 180.16402 * 14 13 12 31 31 H 1.07995 * 120.01750 * 359.97438 * 17 16 12 32 32 H 1.08010 * 119.65121 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.82108 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 2.8640 -6.7656 -1.1153 14 6 3.7338 -7.7266 -0.7670 15 6 3.8625 -7.6795 0.6916 16 6 3.0220 -6.6380 1.1231 17 6 2.9322 -6.3497 2.4811 18 6 3.6636 -7.0824 3.3898 19 6 4.4950 -8.1098 2.9661 20 6 4.6000 -8.4131 1.6254 21 9 5.4108 -9.4134 1.2164 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 0.8534 -5.0451 -0.8886 28 1 0.8541 -5.0445 0.8914 29 1 2.5528 -6.5475 -2.1263 30 1 4.2393 -8.4083 -1.4350 31 1 2.2896 -5.5518 2.8228 32 1 3.5898 -6.8546 4.4430 33 1 5.0624 -8.6750 3.6907 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213058530.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:31 Heat of formation + Delta-G solvation = -17.767542 kcal Electronic energy + Delta-G solvation = -16809.582964 eV Core-core repulsion = 13941.953670 eV Total energy + Delta-G solvation = -2867.629294 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.80335 -42.24533 -37.99300 -36.33411 -34.49351 -32.36460 -30.73914 -29.78479 -28.13438 -25.28141 -23.61512 -22.91189 -22.19862 -21.16341 -18.83280 -18.12064 -17.84351 -16.83719 -16.69334 -16.55492 -16.41422 -15.74655 -15.56896 -15.48389 -14.50799 -14.12863 -13.89984 -13.79316 -13.60927 -13.20122 -12.85885 -12.70860 -12.57104 -12.43114 -12.31347 -12.12266 -11.65988 -11.52403 -11.28123 -10.57738 -10.47623 -9.27964 -8.55516 -8.22784 -6.33565 0.00269 0.52154 1.39472 1.39842 1.50878 1.72422 1.86018 2.39472 2.74557 3.10877 3.33932 3.67935 3.78092 3.92331 4.12487 4.17574 4.19338 4.37013 4.44010 4.62418 4.73782 4.79940 4.92370 4.95928 5.09182 5.14742 5.28467 5.45297 5.46853 5.64389 5.67826 5.80305 5.84522 6.19398 6.21769 6.35390 6.81919 7.35919 8.88139 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.035396 B = 0.004380 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.857531 B = 6391.300498 C = 6656.488284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.029 3.971 10 C -0.107 4.107 11 C 0.116 3.884 12 N -0.480 5.480 13 C 0.059 3.941 14 C -0.219 4.219 15 C -0.171 4.171 16 C 0.102 3.898 17 C -0.146 4.146 18 C -0.074 4.074 19 C -0.180 4.180 20 C 0.115 3.885 21 F -0.146 7.146 22 H 0.265 0.735 23 H 0.003 0.997 24 H 0.001 0.999 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.088 0.912 29 H 0.199 0.801 30 H 0.163 0.837 31 H 0.131 0.869 32 H 0.166 0.834 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -15.441 2.885 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.145 4.145 11 C -0.005 4.005 12 N -0.161 5.161 13 C -0.066 4.066 14 C -0.243 4.243 15 C -0.177 4.177 16 C -0.005 4.005 17 C -0.166 4.166 18 C -0.093 4.093 19 C -0.199 4.199 20 C 0.096 3.904 21 F -0.125 7.125 22 H 0.073 0.927 23 H 0.022 0.978 24 H 0.019 0.981 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.124 0.876 28 H 0.107 0.893 29 H 0.216 0.784 30 H 0.180 0.820 31 H 0.149 0.851 32 H 0.183 0.817 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.531 -15.103 2.820 16.329 hybrid contribution 0.323 0.889 -0.246 0.977 sum 5.854 -14.214 2.574 15.587 Atomic orbital electron populations 1.70060 1.07542 1.27847 1.51430 1.25866 0.95724 1.03008 0.94652 0.85531 0.78670 0.78868 0.78515 1.19779 1.20571 1.19169 1.21620 0.93316 0.92517 1.50891 0.92831 1.18916 0.94108 0.92087 0.95763 1.21761 0.98577 0.93346 1.00860 1.21959 0.90143 0.83309 1.05049 1.44423 1.38079 1.28847 1.04779 1.22418 0.97803 0.93900 0.92468 1.21810 1.05971 1.04615 0.91936 1.19424 1.02789 1.00208 0.95275 1.18348 0.97086 0.95577 0.89532 1.20447 1.03949 1.02999 0.89254 1.20965 0.94203 0.93502 1.00598 1.21144 1.03902 1.01794 0.93096 1.17306 0.92517 0.87854 0.92741 1.91428 1.70891 1.58653 1.91510 0.92653 0.97847 0.98078 0.93571 0.92946 0.87610 0.89328 0.78425 0.81992 0.85119 0.81657 0.82449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.42 4.97 29.84 0.15 1.57 16 10 C -0.11 -4.13 5.48 30.59 0.17 -3.96 16 11 C 0.12 3.52 6.00 86.38 0.52 4.04 16 12 N -0.48 -14.18 2.78 -515.92 -1.43 -15.61 16 13 C 0.06 1.52 11.28 82.99 0.94 2.46 16 14 C -0.22 -5.89 11.08 23.51 0.26 -5.63 16 15 C -0.17 -5.19 6.36 -20.17 -0.13 -5.32 16 16 C 0.10 3.13 6.81 39.02 0.27 3.39 16 17 C -0.15 -3.95 9.98 22.37 0.22 -3.72 16 18 C -0.07 -1.62 10.01 22.29 0.22 -1.40 16 19 C -0.18 -4.12 10.01 22.31 0.22 -3.90 16 20 C 0.12 3.24 7.34 22.55 0.17 3.41 16 21 F -0.15 -4.10 17.28 44.97 0.78 -3.32 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 24 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.11 2.85 8.12 -2.39 -0.02 2.84 16 28 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.20 3.68 8.06 -2.91 -0.02 3.65 16 30 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 33 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -64.45 293.24 6.45 -58.01 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 1.09 Total: 8.00 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 3.70 Total: -38.20 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.15 Total: -69.87 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.45 6.45 -58.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213058530.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.240 kcal (2) G-P(sol) polarization free energy of solvation -64.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds