Wall clock time and date at job start Mon Mar 30 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36069 * 116.99905 * 2 1 4 4 C 1.38871 * 119.95902 * 0.02562 * 3 2 1 5 5 C 1.37953 * 120.62182 * 179.97438 * 4 3 2 6 6 C 1.39122 * 120.14908 * 0.04143 * 5 4 3 7 7 N 1.38283 * 132.70258 * 179.97438 * 6 5 4 8 8 H 0.96996 * 124.70640 * 359.97438 * 7 6 5 9 9 C 1.35626 * 110.59859 * 180.02562 * 7 6 5 10 10 C 1.38944 * 109.27341 * 0.02562 * 9 7 6 11 11 C 1.40886 * 126.92544 * 180.02562 * 10 9 7 12 12 H 1.07990 * 120.00000 * 160.67981 * 11 10 9 13 13 C 1.39688 * 119.99500 * 340.67979 * 11 10 9 14 14 N 1.31085 * 119.99445 * 164.60871 * 13 11 10 15 15 Si 1.86794 * 120.00046 * 344.60591 * 13 11 10 16 16 H 1.48497 * 109.46971 * 90.93628 * 15 13 11 17 17 H 1.48501 * 109.47034 * 210.93024 * 15 13 11 18 18 H 1.48498 * 109.47302 * 330.93515 * 15 13 11 19 19 C 1.40298 * 119.41787 * 359.97438 * 6 5 4 20 20 C 1.38898 * 119.95531 * 179.72267 * 3 2 1 21 21 O 1.35918 * 120.22485 * 0.02562 * 20 3 2 22 22 C 1.42895 * 117.00209 * 89.99960 * 21 20 3 23 23 H 1.09005 * 109.47123 * 60.00335 * 1 2 3 24 24 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47250 * 299.99954 * 1 2 3 26 26 H 1.07997 * 119.68899 * 359.97438 * 4 3 2 27 27 H 1.08005 * 119.92441 * 180.02562 * 5 4 3 28 28 H 1.07997 * 125.36837 * 179.97438 * 9 7 6 29 29 H 0.96997 * 119.99556 * 179.97438 * 14 13 11 30 30 H 1.09004 * 109.47492 * 180.02562 * 22 21 20 31 31 H 1.09001 * 109.47170 * 299.99572 * 22 21 20 32 32 H 1.08997 * 109.47671 * 59.99864 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2124 0.0000 4 6 1.2895 2.3765 0.0005 5 6 1.9015 3.6129 0.0011 6 6 3.2896 3.7054 0.0002 7 7 4.1578 4.7817 0.0000 8 1 3.8839 5.7122 0.0001 9 6 5.4456 4.3560 -0.0015 10 6 5.4694 2.9668 -0.0030 11 6 6.6100 2.1398 -0.0043 12 1 6.5292 1.1081 0.3041 13 6 7.8453 2.6546 -0.4045 14 7 8.9479 2.0018 -0.1280 15 14 7.9260 4.2731 -1.3337 16 1 8.0751 5.3913 -0.3680 17 1 9.0899 4.2569 -2.2558 18 1 6.6772 4.4576 -2.1158 19 6 4.0585 2.5318 -0.0007 20 6 3.4338 1.2840 0.0058 21 8 4.1777 0.1465 0.0110 22 6 4.5382 -0.3987 -1.2597 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2114 2.3133 0.0005 27 1 1.3016 4.5110 0.0019 28 1 6.3155 4.9960 -0.0024 29 1 9.8057 2.3591 -0.4062 30 1 5.1286 -1.3032 -1.1128 31 1 3.6354 -0.6418 -1.8201 32 1 5.1251 0.3324 -1.8156 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215842973.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:45 Heat of formation + Delta-G solvation = -14.078629 kcal Electronic energy + Delta-G solvation = -17978.837364 eV Core-core repulsion = 15098.995244 eV Total energy + Delta-G solvation = -2879.842120 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25848 -38.56413 -37.13121 -34.69643 -33.33835 -30.74793 -28.88334 -28.07521 -26.70255 -25.87852 -24.36278 -21.89445 -20.97767 -19.62385 -17.77495 -16.99417 -16.55910 -16.08161 -15.37494 -14.97672 -14.69631 -14.30008 -14.10361 -13.97561 -13.25756 -13.15481 -12.59527 -12.23698 -12.06224 -11.60906 -11.46122 -11.19004 -11.00754 -10.86819 -10.47315 -10.15175 -9.81201 -9.58636 -9.22632 -9.05988 -8.41035 -7.10173 -6.71931 -6.69455 -4.05466 1.74807 2.33911 3.05414 3.21499 3.32873 3.76445 3.81688 4.08528 4.23693 4.33313 4.81042 5.28048 5.37263 5.41339 5.42915 5.61147 5.70436 6.00171 6.02363 6.06800 6.18718 6.32796 6.40979 6.51476 6.66622 6.85658 7.00611 7.21362 7.39532 7.68580 7.86227 8.12085 8.47846 8.54175 8.69405 8.87132 9.04876 10.35168 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.028894 B = 0.008585 C = 0.006907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.818725 B = 3260.623163 C = 4053.127821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.314 6.314 3 C 0.031 3.969 4 C -0.168 4.168 5 C -0.130 4.130 6 C 0.092 3.908 7 N -0.582 5.582 8 H 0.398 0.602 9 C -0.174 4.174 10 C 0.044 3.956 11 C -0.415 4.415 12 H 0.097 0.903 13 C 0.079 3.921 14 N -0.827 5.827 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.296 1.296 18 H -0.247 1.247 19 C -0.115 4.115 20 C 0.135 3.865 21 O -0.320 6.320 22 C 0.046 3.954 23 H 0.046 0.954 24 H 0.089 0.911 25 H 0.047 0.953 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.144 0.856 29 H 0.280 0.720 30 H 0.083 0.917 31 H 0.032 0.968 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.904 1.388 -2.431 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.229 6.229 3 C -0.015 4.015 4 C -0.188 4.188 5 C -0.152 4.152 6 C -0.019 4.019 7 N -0.185 5.185 8 H 0.232 0.768 9 C -0.296 4.296 10 C 0.038 3.962 11 C -0.446 4.446 12 H 0.115 0.885 13 C -0.136 4.136 14 N -0.455 5.455 15 Si 0.734 3.266 16 H -0.202 1.202 17 H -0.224 1.224 18 H -0.170 1.170 19 C -0.123 4.123 20 C 0.090 3.910 21 O -0.236 6.236 22 C -0.049 4.049 23 H 0.064 0.936 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.161 0.839 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.378 1.136 -2.284 11.661 hybrid contribution -0.208 1.521 -0.599 1.648 sum -11.587 2.657 -2.883 12.232 Atomic orbital electron populations 1.22866 0.80292 1.02711 1.00497 1.86103 1.19585 1.26779 1.90398 1.18824 0.90958 0.84183 1.07576 1.20472 0.98515 0.91238 1.08581 1.19609 0.90697 0.96807 1.08077 1.17970 0.90633 0.87618 1.05662 1.40845 1.04870 1.05704 1.67090 0.76831 1.21550 0.84891 0.94843 1.28274 1.18141 0.89783 0.90184 0.98133 1.18737 0.89171 0.99483 1.37225 0.88458 1.25927 0.94981 0.98119 0.94539 1.69777 0.98771 1.39145 1.37774 0.86451 0.78012 0.81800 0.80376 1.20233 1.22360 1.17043 1.19308 0.95012 0.90244 1.07735 1.17256 0.85480 0.85172 1.03078 1.85971 1.70507 1.38498 1.28611 1.22809 0.98482 0.98426 0.85137 0.93568 0.89242 0.93450 0.86069 0.87074 0.83927 0.91021 0.89875 0.94936 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.31 -5.72 10.28 -34.56 -0.36 -6.07 16 3 C 0.03 0.61 6.70 -39.10 -0.26 0.35 16 4 C -0.17 -2.91 9.01 -39.45 -0.36 -3.26 16 5 C -0.13 -2.31 10.06 -39.36 -0.40 -2.70 16 6 C 0.09 1.96 7.23 -83.85 -0.61 1.35 16 7 N -0.58 -11.83 5.99 -9.78 -0.06 -11.89 16 8 H 0.40 6.37 8.96 -40.82 -0.37 6.00 16 9 C -0.17 -4.11 9.25 -15.61 -0.14 -4.26 16 10 C 0.04 1.15 5.66 -104.80 -0.59 0.55 16 11 C -0.42 -11.60 9.71 -38.04 -0.37 -11.97 16 12 H 0.10 2.92 7.42 -52.49 -0.39 2.53 16 13 C 0.08 2.13 5.50 -17.33 -0.10 2.04 16 14 N -0.83 -22.83 13.94 55.54 0.77 -22.05 16 15 Si 0.90 20.82 24.54 -169.99 -4.17 16.65 16 16 H -0.28 -6.10 6.69 56.52 0.38 -5.72 16 17 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.25 -5.73 6.56 56.52 0.37 -5.36 16 19 C -0.12 -2.81 6.28 -104.80 -0.66 -3.47 16 20 C 0.14 3.13 5.77 -38.85 -0.22 2.91 16 21 O -0.32 -7.52 9.34 -34.09 -0.32 -7.84 16 22 C 0.05 0.91 11.13 101.05 1.12 2.03 16 23 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 24 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 26 H 0.12 1.66 6.26 -52.49 -0.33 1.33 16 27 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 28 H 0.14 3.28 4.19 -52.49 -0.22 3.06 16 29 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 271.65 15.07 4.09 4.09 Total: -1.00 -31.10 271.65 -5.03 -36.12 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.40 Total: 6.01 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -1.59 Total: -15.03 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.72 Total: -33.94 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.67 Total: -13.91 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.17 Total: 16.65 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.10 -5.03 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215842973.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.042 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds