Wall clock time and date at job start Mon Mar 30 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35951 * 116.99856 * 2 1 4 4 C 1.38775 * 119.97809 * 179.97438 * 3 2 1 5 5 C 1.38039 * 120.02444 * 180.02562 * 4 3 2 6 6 C 1.38958 * 119.97717 * 0.02562 * 5 4 3 7 7 N 1.39798 * 120.02345 * 179.97438 * 6 5 4 8 8 C 1.34774 * 119.99889 * 35.11141 * 7 6 5 9 9 O 1.21765 * 119.99975 * 355.39347 * 8 7 6 10 10 C 1.46183 * 120.00078 * 175.38765 * 8 7 6 11 11 C 1.38184 * 120.00215 * 179.97438 * 10 8 7 12 12 C 1.38997 * 119.99977 * 179.72433 * 11 10 8 13 13 H 1.08004 * 120.00467 * 0.02562 * 12 11 10 14 14 C 1.41054 * 119.99993 * 180.02562 * 12 11 10 15 15 N 1.30257 * 120.00069 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00056 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47156 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47257 * 119.99999 * 16 14 12 19 19 H 1.48501 * 109.46914 * 239.99450 * 16 14 12 20 20 C 1.38962 * 119.95586 * 0.25545 * 6 5 4 21 21 C 1.38042 * 119.97397 * 359.48398 * 20 6 5 22 22 H 1.09003 * 109.47243 * 60.00094 * 1 2 3 23 23 H 1.09000 * 109.47327 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47460 * 300.00078 * 1 2 3 25 25 H 1.08003 * 119.98552 * 0.02562 * 4 3 2 26 26 H 1.07996 * 120.00852 * 179.97438 * 5 4 3 27 27 H 0.96998 * 120.00344 * 215.11310 * 7 6 5 28 28 H 1.08001 * 120.00217 * 0.02562 * 10 8 7 29 29 H 1.08001 * 119.99568 * 0.02562 * 11 10 8 30 30 H 0.97000 * 120.00312 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.01338 * 179.72610 * 20 6 5 32 32 H 1.08005 * 119.98690 * 180.25337 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 3.4320 1.2835 0.0005 5 6 4.0597 2.5129 0.0011 6 6 3.3033 3.6786 0.0016 7 7 3.9379 4.9242 0.0027 8 6 5.0948 5.0917 -0.6681 9 8 5.6307 4.1391 -1.2048 10 6 5.7062 6.4169 -0.7515 11 6 6.8926 6.5885 -1.4388 12 6 7.4710 7.8496 -1.5229 13 1 6.9933 8.6954 -1.0507 14 6 8.6818 8.0249 -2.2249 15 7 9.2582 7.0048 -2.7940 16 14 9.4594 9.7196 -2.3373 17 1 8.6140 10.7012 -1.6117 18 1 10.8129 9.6847 -1.7272 19 1 9.5694 10.1201 -3.7631 20 6 1.9156 3.6054 0.0070 21 6 1.2899 2.3749 0.0010 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 4.0197 0.3773 0.0005 26 1 5.1382 2.5688 0.0019 27 1 3.5457 5.6680 0.4862 28 1 5.2311 7.2617 -0.2752 29 1 7.3680 5.7435 -1.9147 30 1 10.0906 7.1253 -3.2772 31 1 1.3269 4.5107 0.0119 32 1 0.2114 2.3177 0.0010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225586720.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:09 Heat of formation + Delta-G solvation = -73.208539 kcal Electronic energy + Delta-G solvation = -16439.530292 eV Core-core repulsion = 13557.124106 eV Total energy + Delta-G solvation = -2882.406186 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33612 -40.16309 -38.07448 -36.45293 -35.02044 -33.07405 -32.04431 -30.14015 -28.28388 -27.45637 -24.07776 -23.75724 -22.20206 -20.52104 -19.26472 -19.10263 -18.23162 -17.54395 -16.82249 -16.67989 -16.53156 -15.67049 -15.26510 -15.18217 -14.61705 -14.56033 -14.11732 -13.67374 -13.60404 -13.39363 -13.18395 -13.03949 -12.81545 -12.19855 -11.94902 -11.78504 -11.73458 -11.62743 -10.73645 -10.39002 -10.08905 -9.93814 -9.06244 -8.59759 -6.79158 0.36164 0.39512 0.91144 1.35454 1.56591 1.61639 2.09730 2.41043 2.49011 2.62043 2.87340 3.36049 3.86919 3.97062 4.28496 4.40618 4.46592 4.49432 4.68197 4.76168 4.80394 4.86707 4.95124 5.05984 5.13544 5.31170 5.47269 5.62343 5.64473 5.85848 6.06507 6.25914 6.51614 6.55733 6.75700 7.02783 7.79470 7.95845 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.074244 B = 0.003538 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.043529 B = 7911.362369 C = 8179.854058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.095 3.905 4 C -0.145 4.145 5 C -0.112 4.112 6 C 0.107 3.893 7 N -0.677 5.677 8 C 0.545 3.455 9 O -0.631 6.631 10 C -0.505 4.505 11 C 0.091 3.909 12 C -0.436 4.436 13 H 0.098 0.902 14 C 0.025 3.975 15 N -0.802 5.802 16 Si 1.012 2.988 17 H -0.246 1.246 18 H -0.256 1.256 19 H -0.256 1.256 20 C -0.113 4.113 21 C -0.178 4.178 22 H 0.063 0.937 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.416 0.584 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.309 0.691 31 H 0.154 0.846 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.199 -3.513 4.826 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.050 3.950 4 C -0.164 4.164 5 C -0.132 4.132 6 C 0.012 3.988 7 N -0.320 5.320 8 C 0.350 3.650 9 O -0.520 6.520 10 C -0.530 4.530 11 C 0.067 3.933 12 C -0.461 4.461 13 H 0.116 0.884 14 C -0.198 4.198 15 N -0.424 5.424 16 Si 0.829 3.171 17 H -0.168 1.168 18 H -0.180 1.180 19 H -0.180 1.180 20 C -0.133 4.133 21 C -0.197 4.197 22 H 0.082 0.918 23 H 0.137 0.863 24 H 0.086 0.914 25 H 0.151 0.849 26 H 0.130 0.870 27 H 0.253 0.747 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.172 0.828 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.554 -4.402 4.316 13.986 hybrid contribution 0.337 0.700 -0.007 0.777 sum -12.217 -3.702 4.309 13.473 Atomic orbital electron populations 1.23359 0.76432 1.05566 1.02371 1.86039 1.23525 1.26366 1.89124 1.18999 0.91805 0.85160 0.99063 1.20382 0.92464 0.97621 1.05953 1.21102 1.00253 0.91614 1.00275 1.18106 0.92484 0.85723 1.02533 1.43213 1.24695 1.11032 1.53106 1.18692 0.79651 0.89856 0.76764 1.90593 1.64835 1.44229 1.52370 1.21575 1.07092 0.93885 1.30426 1.20633 0.90521 0.95544 0.86560 1.20355 1.04337 0.96169 1.25246 0.88434 1.27797 0.96479 1.04663 0.90822 1.69456 1.16211 1.35764 1.20992 0.84729 0.78397 0.74053 0.79965 1.16827 1.18019 1.18029 1.21002 0.91269 0.99373 1.01680 1.21303 1.01252 0.90571 1.06577 0.91826 0.86312 0.91350 0.84851 0.86986 0.74730 0.87963 0.92159 0.87959 0.82802 0.81701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.34 -8.50 10.50 -93.00 -0.98 -9.47 16 3 C 0.10 2.80 6.69 22.53 0.15 2.95 16 4 C -0.15 -5.02 9.98 22.35 0.22 -4.80 16 5 C -0.11 -4.58 8.69 22.40 0.19 -4.39 16 6 C 0.11 4.07 6.30 38.22 0.24 4.31 16 7 N -0.68 -27.64 5.33 -307.40 -1.64 -29.28 16 8 C 0.55 28.50 7.58 86.31 0.65 29.16 16 9 O -0.63 -37.73 13.70 -4.55 -0.06 -37.79 16 10 C -0.50 -26.87 9.81 24.32 0.24 -26.63 16 11 C 0.09 5.22 8.96 22.44 0.20 5.43 16 12 C -0.44 -22.68 9.06 23.14 0.21 -22.47 16 13 H 0.10 4.70 7.86 -2.91 -0.02 4.67 16 14 C 0.02 1.16 5.51 85.62 0.47 1.64 16 15 N -0.80 -40.54 12.85 22.02 0.28 -40.26 16 16 Si 1.01 33.91 29.57 68.60 2.03 35.94 16 17 H -0.25 -7.85 7.11 99.48 0.71 -7.15 16 18 H -0.26 -8.11 7.11 99.48 0.71 -7.41 16 19 H -0.26 -8.12 7.11 99.48 0.71 -7.41 16 20 C -0.11 -3.25 9.96 22.40 0.22 -3.02 16 21 C -0.18 -4.49 9.03 22.35 0.20 -4.29 16 22 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 23 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 25 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 26 H 0.11 5.36 6.22 -2.91 -0.02 5.34 16 27 H 0.42 13.83 8.80 -92.71 -0.82 13.01 16 28 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.06 3.88 6.93 -2.91 -0.02 3.86 16 30 H 0.31 13.47 8.28 -92.71 -0.77 12.70 16 31 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.17 2.78 6.29 -2.91 -0.02 2.76 16 Total: -1.00 -70.11 286.66 4.09 -66.02 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 0.33 Total: 35.61 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 4.12 Total: -20.77 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -1.35 Total: -69.54 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -1.04 Total: -47.26 kcal Atomic # 14 Polarization: 33.91 SS G_CDS: 2.03 Total: 35.94 kcal Total: -70.11 4.09 -66.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225586720.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.189 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds