Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.42898 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99909 * 179.97438 * 11 10 9 13 13 C 1.38754 * 120.09066 * 359.72756 * 12 11 10 14 14 C 1.38003 * 119.87459 * 179.75007 * 13 12 11 15 15 C 1.38549 * 120.29005 * 0.51491 * 14 13 12 16 16 C 1.38255 * 119.93720 * 359.74146 * 15 14 13 17 17 C 1.38412 * 119.90992 * 0.02562 * 16 15 14 18 18 C 1.51389 * 109.75361 * 179.97438 * 16 15 14 19 19 C 1.54344 * 105.16955 * 342.80285 * 18 16 15 20 20 C 1.51393 * 130.32055 * 179.73353 * 15 14 13 21 21 H 1.09005 * 110.29706 * 78.28682 * 20 15 14 22 22 N 1.46902 * 110.30345 * 316.13817 * 20 15 14 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.07995 * 120.06236 * 0.02562 * 13 12 11 29 29 H 1.07998 * 119.85709 * 180.24880 * 14 13 12 30 30 H 1.07997 * 119.92034 * 180.02562 * 17 16 15 31 31 H 1.08991 * 110.30066 * 101.72595 * 18 16 15 32 32 H 1.09001 * 110.30015 * 223.87912 * 18 16 15 33 33 H 1.09005 * 110.81690 * 268.14585 * 19 18 16 34 34 H 1.08994 * 110.98879 * 144.67247 * 19 18 16 35 35 H 1.00905 * 110.99840 * 61.45177 * 22 20 15 36 36 H 1.00897 * 111.00168 * 185.40219 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 8 5.4505 -2.6366 0.0161 12 6 6.0675 -3.8475 0.0216 13 6 5.3136 -5.0123 0.0275 14 6 5.9447 -6.2396 0.0278 15 6 7.3281 -6.3140 0.0330 16 6 8.0814 -5.1546 0.0325 17 6 7.4514 -3.9222 0.0273 18 6 9.5549 -5.5019 0.0394 19 6 9.6199 -6.9783 0.4846 20 6 8.2444 -7.5191 0.0398 21 1 8.3116 -7.9487 -0.9598 22 7 7.7586 -8.5233 0.9956 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 3.6545 -3.1486 0.9003 27 1 3.6618 -3.1522 -0.8796 28 1 4.2349 -4.9586 0.0273 29 1 5.3576 -7.1461 0.0283 30 1 8.0397 -3.0165 0.0265 31 1 9.9746 -5.3894 -0.9601 32 1 10.0892 -4.8693 0.7482 33 1 9.7342 -7.0522 1.5661 34 1 10.4264 -7.5048 -0.0256 35 1 6.8392 -8.8510 0.7399 36 1 8.4076 -9.2919 1.0737 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232411587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = -25.652814 kcal Electronic energy + Delta-G solvation = -17041.240107 eV Core-core repulsion = 14296.729187 eV Total energy + Delta-G solvation = -2744.510920 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34867 -38.49574 -35.32683 -33.29390 -32.99494 -31.01108 -29.79075 -28.37847 -25.93816 -24.79306 -22.79328 -21.24313 -20.45129 -20.04806 -17.62072 -16.58563 -16.19602 -15.92423 -15.76182 -15.39364 -14.66766 -14.40461 -14.17026 -13.73653 -13.16990 -12.96847 -12.82368 -12.39723 -12.19064 -11.84389 -11.67667 -11.49218 -11.17613 -11.12106 -10.70945 -10.53412 -10.18189 -9.96741 -9.80538 -9.34681 -8.98878 -8.66330 -8.62083 -7.77365 -6.13791 -4.14714 1.46529 1.59862 3.28609 3.35817 3.41527 3.68072 3.85051 4.33345 4.39032 4.41351 4.48835 4.89974 5.03702 5.08456 5.20384 5.21498 5.37275 5.45585 5.54269 5.63866 5.73457 5.86752 5.92420 5.95121 5.97947 6.23727 6.36234 6.44205 6.63189 6.71273 6.86826 6.90981 7.10491 7.18963 7.23161 7.62371 7.92552 8.38525 8.86916 9.46510 10.98763 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051191 B = 0.003967 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.843569 B = 7056.568766 C = 7531.125713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.074 0.926 9 C -0.009 4.009 10 C 0.073 3.927 11 O -0.319 6.319 12 C 0.148 3.852 13 C -0.210 4.210 14 C -0.056 4.056 15 C -0.142 4.142 16 C -0.058 4.058 17 C -0.151 4.151 18 C -0.078 4.078 19 C -0.115 4.115 20 C 0.136 3.864 21 H 0.046 0.954 22 N -0.841 5.841 23 H 0.266 0.734 24 H 0.023 0.977 25 H 0.028 0.972 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.133 0.867 29 H 0.116 0.884 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.342 0.658 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.448 -14.872 -0.517 23.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.002 4.002 11 O -0.233 6.233 12 C 0.102 3.898 13 C -0.229 4.229 14 C -0.075 4.075 15 C -0.143 4.143 16 C -0.058 4.058 17 C -0.170 4.170 18 C -0.116 4.116 19 C -0.153 4.153 20 C 0.025 3.975 21 H 0.063 0.937 22 N -0.371 5.371 23 H 0.076 0.924 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.134 0.866 30 H 0.144 0.856 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.154 0.846 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 18.400 -13.968 0.023 23.102 hybrid contribution -0.081 0.097 -0.849 0.858 sum 18.320 -13.872 -0.826 22.994 Atomic orbital electron populations 1.69893 1.06283 1.27225 1.50200 1.24936 0.94763 0.99219 0.94094 0.86752 0.80467 0.83256 0.78765 1.20055 1.21162 1.18735 1.20847 0.88341 0.94947 1.52361 0.90744 1.19584 0.96902 0.90243 0.97896 1.23083 0.74602 1.01945 1.00523 1.86111 1.24023 1.25848 1.87270 1.18948 0.91973 0.85169 0.93751 1.21265 1.00650 0.92023 1.08956 1.20257 0.92889 0.96912 0.97428 1.20156 0.93280 0.94616 1.06218 1.20138 0.95545 0.92291 0.97844 1.19759 0.91526 0.97361 1.08328 1.20989 0.92365 0.96207 1.01996 1.22392 0.95482 0.95023 1.02386 1.20724 0.93084 0.90453 0.93223 0.93654 1.58794 1.07196 1.17861 1.53251 0.92440 0.95843 0.95394 0.92463 0.92532 0.84887 0.86587 0.85592 0.90156 0.90427 0.89867 0.91004 0.84555 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.22 4.41 -27.88 -0.12 -0.34 16 10 C 0.07 1.52 4.68 37.16 0.17 1.69 16 11 O -0.32 -6.39 10.14 -19.43 -0.20 -6.59 16 12 C 0.15 2.59 6.68 -39.26 -0.26 2.33 16 13 C -0.21 -3.35 9.04 -39.48 -0.36 -3.71 16 14 C -0.06 -0.78 9.86 -39.55 -0.39 -1.17 16 15 C -0.14 -1.84 5.79 -104.16 -0.60 -2.45 16 16 C -0.06 -0.77 6.13 -104.21 -0.64 -1.40 16 17 C -0.15 -2.32 9.98 -39.38 -0.39 -2.71 16 18 C -0.08 -0.76 6.77 -26.84 -0.18 -0.94 16 19 C -0.11 -0.98 6.75 -25.32 -0.17 -1.16 16 20 C 0.14 1.34 3.99 -67.82 -0.27 1.07 16 21 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 22 N -0.84 -7.34 9.24 -4.75 -0.04 -7.38 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.02 0.57 7.58 -51.93 -0.39 0.17 16 25 H 0.03 0.69 7.19 -51.93 -0.37 0.32 16 26 H 0.06 1.16 7.65 -51.93 -0.40 0.76 16 27 H 0.06 1.14 7.68 -51.93 -0.40 0.74 16 28 H 0.13 2.08 6.31 -52.49 -0.33 1.75 16 29 H 0.12 1.32 7.94 -52.49 -0.42 0.90 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.34 2.70 8.81 -39.29 -0.35 2.35 16 36 H 0.34 2.18 9.04 -39.29 -0.36 1.82 16 LS Contribution 297.98 15.07 4.49 4.49 Total: -1.00 -31.31 297.98 -8.43 -39.73 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.13 Total: 1.42 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -3.65 Total: -22.07 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.73 Total: -33.99 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.20 Total: -6.59 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.31 -8.43 -39.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232411587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.081 kcal (2) G-P(sol) polarization free energy of solvation -31.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds