Wall clock time and date at job start Mon Mar 30 2020 06:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 O 1.42898 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99909 * 179.97438 * 11 10 9 13 13 C 1.38754 * 120.09066 * 359.72756 * 12 11 10 14 14 C 1.38003 * 119.87459 * 179.75007 * 13 12 11 15 15 C 1.38549 * 120.29005 * 0.51491 * 14 13 12 16 16 C 1.38255 * 119.93720 * 359.74146 * 15 14 13 17 17 C 1.38412 * 119.90992 * 0.02562 * 16 15 14 18 18 C 1.51389 * 109.75361 * 179.97438 * 16 15 14 19 19 C 1.54344 * 105.16955 * 342.80285 * 18 16 15 20 20 C 1.51393 * 130.32055 * 179.73353 * 15 14 13 21 21 H 1.09005 * 110.29706 * 78.28682 * 20 15 14 22 22 N 1.46902 * 110.30345 * 316.13817 * 20 15 14 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.07995 * 120.06236 * 0.02562 * 13 12 11 29 29 H 1.07998 * 119.85709 * 180.24880 * 14 13 12 30 30 H 1.07997 * 119.92034 * 180.02562 * 17 16 15 31 31 H 1.08991 * 110.30066 * 101.72595 * 18 16 15 32 32 H 1.09001 * 110.30015 * 223.87912 * 18 16 15 33 33 H 1.09005 * 110.81690 * 268.14585 * 19 18 16 34 34 H 1.08994 * 110.98879 * 144.67247 * 19 18 16 35 35 H 1.00905 * 110.99840 * 61.45177 * 22 20 15 36 36 H 1.00897 * 111.00168 * 185.40219 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 8 5.4505 -2.6366 0.0161 12 6 6.0675 -3.8475 0.0216 13 6 5.3136 -5.0123 0.0275 14 6 5.9447 -6.2396 0.0278 15 6 7.3281 -6.3140 0.0330 16 6 8.0814 -5.1546 0.0325 17 6 7.4514 -3.9222 0.0273 18 6 9.5549 -5.5019 0.0394 19 6 9.6199 -6.9783 0.4846 20 6 8.2444 -7.5191 0.0398 21 1 8.3116 -7.9487 -0.9598 22 7 7.7586 -8.5233 0.9956 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 3.6545 -3.1486 0.9003 27 1 3.6618 -3.1522 -0.8796 28 1 4.2349 -4.9586 0.0273 29 1 5.3576 -7.1461 0.0283 30 1 8.0397 -3.0165 0.0265 31 1 9.9746 -5.3894 -0.9601 32 1 10.0892 -4.8693 0.7482 33 1 9.7342 -7.0522 1.5661 34 1 10.4264 -7.5048 -0.0256 35 1 6.8392 -8.8510 0.7399 36 1 8.4076 -9.2919 1.0737 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232411587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:12 Heat of formation + Delta-G solvation = -46.265284 kcal Electronic energy + Delta-G solvation = -17042.133931 eV Core-core repulsion = 14296.729187 eV Total energy + Delta-G solvation = -2745.404744 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.45825 -39.74880 -36.42854 -35.32704 -33.83766 -32.86048 -30.99640 -29.41736 -27.35564 -26.13019 -23.94560 -22.83809 -21.52347 -21.24495 -19.31465 -18.28973 -17.15259 -17.03437 -16.94032 -16.59774 -16.23980 -15.69444 -15.48136 -14.79328 -14.53331 -14.31259 -14.25685 -14.03579 -13.28619 -13.12403 -12.97988 -12.67372 -12.46271 -12.19708 -12.14222 -11.92771 -11.83101 -11.65766 -11.45465 -11.40258 -10.83243 -9.77132 -9.67662 -8.96006 -8.36711 -6.43787 0.34433 0.44305 1.35068 1.36587 1.49510 2.26444 2.32002 2.72626 2.98217 3.55626 3.58401 3.71279 3.90841 4.06514 4.18952 4.21681 4.26924 4.35415 4.39982 4.50804 4.62568 4.69833 4.79220 4.97191 5.00783 5.09196 5.24384 5.27320 5.28635 5.32356 5.42022 5.50798 5.64799 5.83697 6.14158 6.26162 6.49049 6.61726 6.64732 7.21513 8.79104 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.051191 B = 0.003967 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.843569 B = 7056.568766 C = 7531.125713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.539 4.539 8 H 0.041 0.959 9 C -0.005 4.005 10 C 0.087 3.913 11 O -0.334 6.334 12 C 0.112 3.888 13 C -0.224 4.224 14 C -0.062 4.062 15 C -0.142 4.142 16 C -0.062 4.062 17 C -0.160 4.160 18 C -0.078 4.078 19 C -0.108 4.108 20 C 0.137 3.863 21 H 0.060 0.940 22 N -0.849 5.849 23 H 0.271 0.729 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.138 0.862 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.346 0.654 36 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.374 -15.755 -0.647 26.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.577 4.577 8 H 0.060 0.940 9 C -0.043 4.043 10 C 0.012 3.988 11 O -0.249 6.249 12 C 0.067 3.933 13 C -0.243 4.243 14 C -0.080 4.080 15 C -0.143 4.143 16 C -0.063 4.063 17 C -0.179 4.179 18 C -0.115 4.115 19 C -0.146 4.146 20 C 0.026 3.974 21 H 0.077 0.923 22 N -0.381 5.381 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.156 0.844 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 21.349 -14.886 -0.105 26.027 hybrid contribution -0.953 0.191 -0.804 1.262 sum 20.396 -14.695 -0.909 25.155 Atomic orbital electron populations 1.70024 1.08111 1.28568 1.51472 1.25886 0.95638 1.03339 0.93559 0.85664 0.79391 0.78221 0.79469 1.18848 1.20336 1.17491 1.21112 0.90491 0.93933 1.52119 0.94031 1.19439 0.94397 0.92607 0.97842 1.22672 0.75855 0.99630 1.00601 1.86018 1.22791 1.27668 1.88409 1.19252 0.92957 0.84578 0.96552 1.21331 1.00443 0.92705 1.09843 1.20527 0.93853 0.96795 0.96801 1.20702 0.93268 0.96328 1.03963 1.20636 0.97907 0.91472 0.96291 1.19969 0.90754 0.98758 1.08423 1.21127 0.89714 0.97206 1.03422 1.22415 0.95539 0.94195 1.02435 1.20783 0.92780 0.89542 0.94339 0.92251 1.58750 1.07949 1.18498 1.52941 0.92033 0.95430 0.95427 0.92583 0.92435 0.85601 0.84391 0.85008 0.88352 0.89468 0.90338 0.88071 0.84109 0.83127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 2 C 0.01 0.82 5.47 84.66 0.46 1.28 16 3 Si 0.95 44.63 27.47 68.60 1.88 46.51 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 7 C -0.54 -31.41 9.66 25.60 0.25 -31.17 16 8 H 0.04 2.61 7.99 -2.91 -0.02 2.59 16 9 C -0.01 -0.26 4.41 29.85 0.13 -0.13 16 10 C 0.09 3.74 4.68 71.98 0.34 4.08 16 11 O -0.33 -13.66 10.14 -92.44 -0.94 -14.59 16 12 C 0.11 3.97 6.68 22.48 0.15 4.12 16 13 C -0.22 -7.26 9.04 22.34 0.20 -7.06 16 14 C -0.06 -1.63 9.86 22.29 0.22 -1.41 16 15 C -0.14 -3.39 5.79 -19.57 -0.11 -3.50 16 16 C -0.06 -1.54 6.13 -19.60 -0.12 -1.66 16 17 C -0.16 -4.85 9.98 22.40 0.22 -4.62 16 18 C -0.08 -1.25 6.77 30.52 0.21 -1.04 16 19 C -0.11 -1.43 6.75 31.51 0.21 -1.21 16 20 C 0.14 2.23 3.99 44.85 0.18 2.41 16 21 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 22 N -0.85 -12.27 9.24 -168.96 -1.56 -13.83 16 23 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 24 H 0.03 1.33 7.58 -2.38 -0.02 1.31 16 25 H 0.03 1.35 7.19 -2.39 -0.02 1.34 16 26 H 0.06 2.37 7.65 -2.38 -0.02 2.35 16 27 H 0.06 2.41 7.68 -2.39 -0.02 2.39 16 28 H 0.13 4.12 6.31 -2.91 -0.02 4.10 16 29 H 0.14 2.93 7.94 -2.91 -0.02 2.90 16 30 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 34 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.35 4.55 8.81 -89.69 -0.79 3.76 16 36 H 0.35 3.37 9.04 -89.70 -0.81 2.56 16 Total: -1.00 -68.34 297.98 1.46 -66.88 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.56 Total: 13.39 kcal Atomic # 6 Polarization: -42.26 SS G_CDS: 2.34 Total: -39.92 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.26 Total: -72.26 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.94 Total: -14.59 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.51 kcal Total: -68.34 1.46 -66.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232411587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.614 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds