Wall clock time and date at job start Mon Mar 30 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46813 * 2 1 4 4 C 1.50699 * 109.47356 * 119.99375 * 2 1 3 5 5 H 1.08002 * 119.99640 * 120.00257 * 4 2 1 6 6 C 1.37877 * 120.00093 * 300.00355 * 4 2 1 7 7 N 1.31511 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99836 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47079 * 90.00387 * 8 6 4 10 10 H 1.48504 * 109.47046 * 210.00045 * 8 6 4 11 11 H 1.48501 * 109.47101 * 330.00107 * 8 6 4 12 12 C 1.53000 * 109.47272 * 239.99917 * 2 1 3 13 13 C 1.50701 * 109.46945 * 64.99722 * 12 2 1 14 14 N 1.30926 * 126.40316 * 90.00509 * 13 12 2 15 15 C 1.35385 * 105.57751 * 179.97438 * 14 13 12 16 16 C 1.47781 * 126.45112 * 180.02562 * 15 14 13 17 17 C 1.36298 * 126.07250 * 179.97438 * 16 15 14 18 18 C 1.40308 * 107.31209 * 179.97438 * 17 16 15 19 19 C 1.35152 * 107.70496 * 0.02562 * 18 17 16 20 20 N 1.36099 * 108.51411 * 359.76774 * 19 18 17 21 21 H 0.96998 * 125.69511 * 180.22409 * 20 19 18 22 22 N 1.31024 * 107.10451 * 359.97438 * 15 14 13 23 23 O 1.21287 * 110.04427 * 0.02562 * 22 15 14 24 24 H 1.09000 * 109.47595 * 300.00007 * 1 2 3 25 25 H 1.08997 * 109.47655 * 60.00618 * 1 2 3 26 26 H 1.08999 * 109.46584 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99917 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.46888 * 304.99195 * 12 2 1 29 29 H 1.09001 * 109.46640 * 184.99668 * 12 2 1 30 30 H 1.07994 * 126.34126 * 359.97438 * 17 16 15 31 31 H 1.08009 * 126.14693 * 180.02562 * 18 17 16 32 32 H 1.07994 * 125.74185 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6993 -0.2391 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3215 -1.1200 4.0080 9 1 3.6297 -0.5454 4.4124 10 1 1.3432 -0.9489 5.1121 11 1 2.4860 -2.5659 3.7121 12 6 2.0400 -0.7213 -1.2492 13 6 1.6413 0.0570 -2.4766 14 7 2.3361 1.0031 -3.0564 15 6 1.5903 1.4074 -4.1115 16 6 1.9443 2.4619 -5.0843 17 6 1.1873 2.8626 -6.1446 18 6 1.8941 3.8815 -6.8010 19 6 3.0526 4.0747 -6.1322 20 7 3.0914 3.2151 -5.0777 21 1 3.8107 3.1451 -4.4308 22 7 0.4960 0.6868 -4.1085 23 8 0.5124 -0.0902 -3.1773 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 0.7089 1.1616 3.4843 28 1 1.6055 -1.7198 -1.2950 29 1 3.1264 -0.7994 -1.2055 30 1 0.2223 2.4686 -6.4272 31 1 1.5706 4.4156 -7.6823 32 1 3.8168 4.7934 -6.3887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235095385.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:17 Heat of formation + Delta-G solvation = 99.236337 kcal Electronic energy + Delta-G solvation = -17068.619744 eV Core-core repulsion = 14225.984080 eV Total energy + Delta-G solvation = -2842.635664 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.08510 -41.04566 -35.84075 -35.11857 -32.71014 -31.17651 -30.74383 -28.90360 -26.64157 -25.26239 -23.95824 -22.55196 -20.76001 -20.21942 -19.67714 -18.34183 -17.69026 -16.53627 -16.25271 -14.68562 -14.36508 -14.32219 -14.04912 -13.69709 -13.44373 -12.89039 -12.57012 -12.33058 -12.05108 -11.74052 -11.54183 -11.29188 -10.99066 -10.81424 -10.65529 -10.27666 -10.19862 -9.94476 -9.32191 -9.02531 -9.00682 -8.44554 -8.04389 -6.09193 -4.17997 1.24966 1.96164 2.67931 2.99526 3.24656 3.25978 3.30988 3.33809 3.36850 3.87249 4.35728 4.50574 5.03119 5.22489 5.31069 5.36323 5.50220 5.87272 5.94917 6.08995 6.14607 6.19005 6.34101 6.48990 6.77642 6.80291 6.91953 7.00207 7.16735 7.40805 7.59097 7.79931 7.99993 8.25068 8.52884 8.84546 9.47917 10.97016 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.043649 B = 0.004526 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.325516 B = 6185.040706 C = 6424.756746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 H 0.034 0.966 4 C -0.519 4.519 5 H 0.061 0.939 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.028 4.028 13 C 0.226 3.774 14 N -0.502 5.502 15 C 0.227 3.773 16 C 0.083 3.917 17 C -0.145 4.145 18 C -0.206 4.206 19 C 0.010 3.990 20 N -0.536 5.536 21 H 0.423 0.577 22 N -0.381 5.381 23 O 0.075 5.925 24 H 0.086 0.914 25 H 0.004 0.996 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 3.064 -13.697 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.557 4.557 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C -0.067 4.067 13 C 0.007 3.993 14 N -0.235 5.235 15 C -0.043 4.043 16 C -0.030 4.030 17 C -0.172 4.172 18 C -0.231 4.231 19 C -0.125 4.125 20 N -0.131 5.131 21 H 0.261 0.739 22 N -0.091 5.091 23 O 0.017 5.983 24 H 0.105 0.895 25 H 0.023 0.977 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.928 3.484 -14.060 14.778 hybrid contribution 0.596 -0.428 1.304 1.496 sum 3.524 3.056 -12.757 13.583 Atomic orbital electron populations 1.21892 0.98108 0.99599 1.00352 1.18748 0.93173 0.96200 0.88830 0.94793 1.21014 1.31936 1.12769 0.89946 0.92075 1.24951 0.94840 0.94910 0.99116 1.69892 1.36202 1.22738 1.23637 0.86529 0.78580 0.80047 0.82464 1.20637 1.21195 1.19746 1.20894 1.02492 0.97507 0.85803 1.29430 0.81152 0.93083 0.95604 1.72042 1.30239 1.13463 1.07800 1.22812 0.89003 0.97964 0.94528 1.16786 0.90823 0.97328 0.98112 1.20936 1.00568 0.99998 0.95742 1.20836 0.95967 1.02857 1.03449 1.21984 1.01252 0.98302 0.90935 1.41920 1.17431 1.29249 1.24525 0.73929 1.74892 1.20765 1.06104 1.07344 1.85297 1.38610 1.45261 1.29087 0.89508 0.97661 0.94797 0.92796 0.88977 0.88181 0.83934 0.84000 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.78 37.16 0.33 -3.00 16 2 C 0.05 1.18 2.29 -91.77 -0.21 0.97 16 3 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 4 C -0.52 -13.29 8.56 -34.44 -0.29 -13.58 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 12 C -0.03 -0.53 5.26 -27.88 -0.15 -0.68 16 13 C 0.23 4.34 6.90 -12.98 -0.09 4.25 16 14 N -0.50 -9.69 11.58 -9.88 -0.11 -9.80 16 15 C 0.23 4.20 8.06 -156.04 -1.26 2.94 16 16 C 0.08 1.31 7.12 -82.25 -0.59 0.73 16 17 C -0.14 -2.03 10.78 -39.50 -0.43 -2.46 16 18 C -0.21 -2.33 10.83 -39.90 -0.43 -2.77 16 19 C 0.01 0.10 11.92 -16.76 -0.20 -0.10 16 20 N -0.54 -6.79 6.11 -9.47 -0.06 -6.85 16 21 H 0.42 4.75 8.96 -40.82 -0.37 4.38 16 22 N -0.38 -7.28 12.19 30.99 0.38 -6.90 16 23 O 0.08 1.44 10.73 18.01 0.19 1.63 16 24 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 25 H 0.00 0.10 6.93 -51.93 -0.36 -0.26 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 283.35 15.07 4.27 4.27 Total: -1.00 -29.40 283.35 -6.68 -36.08 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -3.54 Total: 2.34 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.41 Total: -12.08 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.83 Total: -47.57 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.40 -6.68 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235095385.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.316 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds