Wall clock time and date at job start Mon Mar 30 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46813 * 2 1 4 4 C 1.50699 * 109.47356 * 119.99375 * 2 1 3 5 5 H 1.08002 * 119.99640 * 120.00257 * 4 2 1 6 6 C 1.37877 * 120.00093 * 300.00355 * 4 2 1 7 7 N 1.31511 * 119.99927 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99836 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47079 * 90.00387 * 8 6 4 10 10 H 1.48504 * 109.47046 * 210.00045 * 8 6 4 11 11 H 1.48501 * 109.47101 * 330.00107 * 8 6 4 12 12 C 1.53000 * 109.47272 * 239.99917 * 2 1 3 13 13 C 1.50701 * 109.46945 * 64.99722 * 12 2 1 14 14 N 1.30926 * 126.40316 * 90.00509 * 13 12 2 15 15 C 1.35385 * 105.57751 * 179.97438 * 14 13 12 16 16 C 1.47781 * 126.45112 * 180.02562 * 15 14 13 17 17 C 1.36298 * 126.07250 * 179.97438 * 16 15 14 18 18 C 1.40308 * 107.31209 * 179.97438 * 17 16 15 19 19 C 1.35152 * 107.70496 * 0.02562 * 18 17 16 20 20 N 1.36099 * 108.51411 * 359.76774 * 19 18 17 21 21 H 0.96998 * 125.69511 * 180.22409 * 20 19 18 22 22 N 1.31024 * 107.10451 * 359.97438 * 15 14 13 23 23 O 1.21287 * 110.04427 * 0.02562 * 22 15 14 24 24 H 1.09000 * 109.47595 * 300.00007 * 1 2 3 25 25 H 1.08997 * 109.47655 * 60.00618 * 1 2 3 26 26 H 1.08999 * 109.46584 * 180.02562 * 1 2 3 27 27 H 0.97002 * 119.99917 * 179.97438 * 7 6 4 28 28 H 1.08993 * 109.46888 * 304.99195 * 12 2 1 29 29 H 1.09001 * 109.46640 * 184.99668 * 12 2 1 30 30 H 1.07994 * 126.34126 * 359.97438 * 17 16 15 31 31 H 1.08009 * 126.14693 * 180.02562 * 18 17 16 32 32 H 1.07994 * 125.74185 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6993 -0.2391 2.4827 7 7 0.9435 0.8304 2.6033 8 14 2.3215 -1.1200 4.0080 9 1 3.6297 -0.5454 4.4124 10 1 1.3432 -0.9489 5.1121 11 1 2.4860 -2.5659 3.7121 12 6 2.0400 -0.7213 -1.2492 13 6 1.6413 0.0570 -2.4766 14 7 2.3361 1.0031 -3.0564 15 6 1.5903 1.4074 -4.1115 16 6 1.9443 2.4619 -5.0843 17 6 1.1873 2.8626 -6.1446 18 6 1.8941 3.8815 -6.8010 19 6 3.0526 4.0747 -6.1322 20 7 3.0914 3.2151 -5.0777 21 1 3.8107 3.1451 -4.4308 22 7 0.4960 0.6868 -4.1085 23 8 0.5124 -0.0902 -3.1773 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 0.7089 1.1616 3.4843 28 1 1.6055 -1.7198 -1.2950 29 1 3.1264 -0.7994 -1.2055 30 1 0.2223 2.4686 -6.4272 31 1 1.5706 4.4156 -7.6823 32 1 3.8168 4.7934 -6.3887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235095385.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:16 Heat of formation + Delta-G solvation = 80.206280 kcal Electronic energy + Delta-G solvation = -17069.444949 eV Core-core repulsion = 14225.984080 eV Total energy + Delta-G solvation = -2843.460869 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -46.53052 -42.01261 -37.51850 -36.66480 -34.41750 -32.64438 -31.96178 -30.01766 -28.32181 -27.24812 -25.29526 -24.00961 -21.96593 -21.59586 -20.88181 -19.58985 -19.17470 -18.30265 -17.76771 -16.57409 -15.77334 -15.38886 -15.33490 -15.05122 -14.74514 -14.62482 -13.67259 -13.58671 -13.44549 -13.22233 -13.06688 -12.99546 -12.80780 -12.52664 -12.20863 -12.18406 -11.88785 -11.74664 -10.96979 -10.93992 -10.45842 -9.98861 -9.08845 -8.09610 -6.24763 -0.09219 0.61302 1.47547 1.48825 1.58611 1.68394 1.82593 2.00243 2.08691 2.45784 2.59346 3.20631 3.21475 3.96716 4.32611 4.37474 4.38086 4.45543 4.46857 4.61568 4.79504 4.82455 5.01278 5.08902 5.16673 5.25035 5.30205 5.59841 5.80793 5.83439 5.93168 6.03641 6.27063 6.52714 6.86343 7.08281 7.45048 8.96333 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.043649 B = 0.004526 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.325516 B = 6185.040706 C = 6424.756746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.050 3.950 3 H -0.004 1.004 4 C -0.529 4.529 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.260 1.260 12 C -0.016 4.016 13 C 0.221 3.779 14 N -0.513 5.513 15 C 0.229 3.771 16 C 0.032 3.968 17 C -0.145 4.145 18 C -0.217 4.217 19 C 0.038 3.962 20 N -0.536 5.536 21 H 0.427 0.573 22 N -0.399 5.399 23 O 0.068 5.932 24 H 0.056 0.944 25 H 0.009 0.991 26 H 0.045 0.955 27 H 0.260 0.740 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.140 0.860 31 H 0.171 0.829 32 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.467 3.174 -14.834 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.030 3.970 3 H 0.014 0.986 4 C -0.567 4.567 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.184 1.184 12 C -0.055 4.055 13 C 0.002 3.998 14 N -0.248 5.248 15 C -0.040 4.040 16 C -0.081 4.081 17 C -0.174 4.174 18 C -0.241 4.241 19 C -0.097 4.097 20 N -0.132 5.132 21 H 0.266 0.734 22 N -0.111 5.111 23 O 0.013 5.987 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.158 0.842 31 H 0.189 0.811 32 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.205 3.559 -15.191 16.160 hybrid contribution 0.225 -0.328 1.524 1.575 sum 4.430 3.231 -13.667 14.726 Atomic orbital electron populations 1.21732 0.98174 0.99897 0.99058 1.18613 0.93097 0.94532 0.90752 0.98609 1.21437 1.31579 1.12987 0.90653 0.90848 1.25780 0.95100 0.95580 1.02244 1.70048 1.37629 1.24325 1.24060 0.85517 0.77727 0.79487 0.78688 1.20410 1.21531 1.18385 1.20701 1.03256 0.97862 0.83664 1.29409 0.81375 0.93215 0.95795 1.72032 1.30787 1.13605 1.08328 1.23317 0.88354 0.97968 0.94371 1.16881 0.93137 0.98948 0.99183 1.21199 1.00484 1.00328 0.95370 1.21232 0.96026 1.02381 1.04465 1.22833 1.01460 0.96791 0.88626 1.42045 1.16722 1.29163 1.25285 0.73398 1.74855 1.21462 1.06944 1.07838 1.85265 1.38568 1.45577 1.29300 0.92515 0.97152 0.93561 0.93050 0.86588 0.86952 0.84232 0.81144 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.78 71.98 0.63 -5.59 16 2 C 0.05 2.37 2.29 -11.54 -0.03 2.35 16 3 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 4 C -0.53 -26.89 8.56 25.60 0.22 -26.67 16 5 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -52.26 11.32 21.45 0.24 -52.01 16 8 Si 0.96 41.52 29.54 68.60 2.03 43.54 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 12 C -0.02 -0.60 5.26 29.85 0.16 -0.44 16 13 C 0.22 8.51 6.90 88.35 0.61 9.12 16 14 N -0.51 -19.97 11.58 -302.30 -3.50 -23.47 16 15 C 0.23 8.57 8.06 136.98 1.10 9.67 16 16 C 0.03 0.98 7.12 40.37 0.29 1.27 16 17 C -0.15 -3.93 10.78 22.32 0.24 -3.69 16 18 C -0.22 -4.26 10.83 22.06 0.24 -4.03 16 19 C 0.04 0.65 11.92 83.32 0.99 1.64 16 20 N -0.54 -12.65 6.11 -183.87 -1.12 -13.77 16 21 H 0.43 9.00 8.96 -92.71 -0.83 8.17 16 22 N -0.40 -15.45 12.19 -58.81 -0.72 -16.16 16 23 O 0.07 2.61 10.73 74.51 0.80 3.41 16 24 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 25 H 0.01 0.44 6.93 -2.39 -0.02 0.42 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 27 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 29 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 31 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.22 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -64.31 283.35 2.95 -61.36 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.32 Total: 12.41 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.91 Total: -15.31 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -5.10 Total: -105.42 kcal Atomic # 8 Polarization: 2.61 SS G_CDS: 0.80 Total: 3.41 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Total: -64.31 2.95 -61.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235095385.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.564 kcal (2) G-P(sol) polarization free energy of solvation -64.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds