Wall clock time and date at job start Mon Mar 30 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 C 1.53009 * 109.46772 * 119.99644 * 2 1 3 5 5 C 1.50705 * 109.46966 * 294.99763 * 4 2 1 6 6 H 1.08003 * 119.99519 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00152 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99489 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00179 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47249 * 89.99825 * 9 7 5 11 11 H 1.48506 * 109.47121 * 209.99811 * 9 7 5 12 12 H 1.48503 * 109.47219 * 329.99786 * 9 7 5 13 13 C 1.50699 * 109.47062 * 239.99284 * 2 1 3 14 14 N 1.30928 * 126.40080 * 120.32734 * 13 2 1 15 15 C 1.35391 * 105.57531 * 180.12037 * 14 13 2 16 16 C 1.47772 * 126.44715 * 179.84465 * 15 14 13 17 17 C 1.36301 * 126.07215 * 359.88087 * 16 15 14 18 18 C 1.40317 * 107.31471 * 180.21897 * 17 16 15 19 19 C 1.35145 * 107.70054 * 359.77627 * 18 17 16 20 20 N 1.36103 * 108.51810 * 359.97438 * 19 18 17 21 21 H 0.97001 * 125.69328 * 179.97438 * 20 19 18 22 22 N 1.31024 * 107.10006 * 359.57820 * 15 14 13 23 23 O 1.21287 * 110.05292 * 0.26994 * 22 15 14 24 24 H 1.08999 * 109.46907 * 300.00420 * 1 2 3 25 25 H 1.09003 * 109.46737 * 60.00519 * 1 2 3 26 26 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47250 * 54.99712 * 4 2 1 28 28 H 1.08996 * 109.46592 * 175.00091 * 4 2 1 29 29 H 0.97001 * 119.99543 * 179.97438 * 8 7 5 30 30 H 1.07994 * 126.34353 * 359.97438 * 17 16 15 31 31 H 1.07994 * 126.14667 * 179.79654 * 18 17 16 32 32 H 1.07998 * 125.74440 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0572 2.4767 6 1 1.0800 0.9744 2.3756 7 6 1.9931 -0.4014 3.7284 8 7 2.6762 -1.5185 3.8513 9 14 1.4983 0.5631 5.2496 10 1 0.1714 0.0940 5.7233 11 1 2.5078 0.3539 6.3185 12 1 1.4225 2.0083 4.9165 13 6 2.0324 -0.7106 -1.2304 14 7 2.7930 -0.2005 -2.1660 15 6 2.9835 -1.1967 -3.0629 16 6 3.7746 -1.1172 -4.3085 17 6 4.4455 -0.0218 -4.7646 18 6 5.0539 -0.3797 -5.9773 19 6 4.7465 -1.6721 -6.2255 20 7 3.9675 -2.1340 -5.2095 21 1 3.6054 -3.0309 -5.1367 22 7 2.3390 -2.2461 -2.6158 23 8 1.7899 -1.9814 -1.5672 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -1.7197 1.2954 28 1 3.1263 -0.7994 1.2057 29 1 2.9241 -1.8409 4.7320 30 1 4.4958 0.9439 -4.2839 31 1 5.6592 0.2621 -6.6000 32 1 5.0653 -2.2425 -7.0854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235101239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:22 Heat of formation + Delta-G solvation = 97.155144 kcal Electronic energy + Delta-G solvation = -16953.357548 eV Core-core repulsion = 14110.631638 eV Total energy + Delta-G solvation = -2842.725911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.10251 -41.08703 -35.95317 -35.18295 -32.63335 -31.33447 -30.84977 -28.96333 -27.15322 -24.63543 -24.03089 -22.73188 -21.09131 -20.31358 -19.98828 -17.88188 -17.64959 -16.67679 -16.38022 -14.67451 -14.53484 -14.37738 -14.23990 -13.77471 -13.35454 -12.74434 -12.65372 -12.39332 -12.08043 -11.96525 -11.53321 -11.40789 -10.98636 -10.94740 -10.69166 -10.57820 -10.25202 -10.05119 -9.35846 -9.26548 -9.05111 -8.45653 -8.07689 -6.09554 -4.13677 1.19702 1.94140 2.65483 2.89943 3.23787 3.28159 3.29433 3.35777 3.38190 3.91492 4.31501 4.43477 4.97866 5.25677 5.27091 5.31955 5.55133 5.70398 5.78195 5.83579 6.05811 6.17295 6.22951 6.28060 6.53552 6.64609 6.75450 6.80650 6.90156 7.33184 7.46649 7.54112 7.85687 8.21453 8.48739 8.90631 9.50961 11.01786 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.004279 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.259364 B = 6541.502559 C = 6597.025156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 H 0.108 0.892 4 C 0.028 3.972 5 C -0.521 4.521 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.228 3.772 14 N -0.485 5.485 15 C 0.232 3.768 16 C 0.077 3.923 17 C -0.131 4.131 18 C -0.206 4.206 19 C 0.009 3.991 20 N -0.544 5.544 21 H 0.419 0.581 22 N -0.405 5.405 23 O 0.079 5.921 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.022 0.978 29 H 0.263 0.737 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 0.409 -16.250 16.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.126 0.874 4 C -0.010 4.010 5 C -0.560 4.560 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.197 1.197 13 C 0.008 3.992 14 N -0.218 5.218 15 C -0.038 4.038 16 C -0.036 4.036 17 C -0.159 4.159 18 C -0.231 4.231 19 C -0.125 4.125 20 N -0.139 5.139 21 H 0.256 0.744 22 N -0.116 5.116 23 O 0.022 5.978 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.012 -0.323 -16.683 16.717 hybrid contribution -0.303 -0.060 1.023 1.068 sum 0.709 -0.383 -15.660 15.681 Atomic orbital electron populations 1.21790 0.92923 1.02576 1.02057 1.20415 0.96615 0.98971 0.86247 0.87382 1.19258 0.96924 0.96079 0.88710 1.21052 1.35901 1.08715 0.90289 0.91885 1.25003 0.94931 0.95039 0.99247 1.69970 1.38168 1.21026 1.23818 0.86534 0.78266 0.80364 0.82512 1.20564 1.21235 1.19690 1.29612 0.90965 0.81435 0.97151 1.72041 1.18166 1.28584 1.02997 1.22807 0.98750 0.86374 0.95875 1.16796 1.06179 0.90312 0.90346 1.21008 0.99992 0.97999 0.96869 1.20888 1.07248 0.95643 0.99293 1.21970 0.99790 0.96551 0.94196 1.41913 1.41226 1.12510 1.18267 0.74404 1.74904 1.14367 1.23138 0.99155 1.85232 1.54173 1.30046 1.28361 0.89547 0.93995 0.92306 0.95250 0.95918 0.92776 0.83457 0.83902 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.99 37.16 0.33 -1.96 16 2 C 0.00 -0.04 2.81 -91.76 -0.26 -0.30 16 3 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 4 C 0.03 0.68 4.43 -27.88 -0.12 0.56 16 5 C -0.52 -13.56 8.41 -34.44 -0.29 -13.85 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.17 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 9 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 13 C 0.23 4.45 7.00 -12.98 -0.09 4.36 16 14 N -0.48 -9.46 11.57 -9.87 -0.11 -9.57 16 15 C 0.23 4.27 8.05 -156.04 -1.26 3.01 16 16 C 0.08 1.19 7.12 -82.25 -0.59 0.60 16 17 C -0.13 -1.84 10.79 -39.50 -0.43 -2.26 16 18 C -0.21 -2.28 10.83 -39.90 -0.43 -2.71 16 19 C 0.01 0.09 11.92 -16.76 -0.20 -0.11 16 20 N -0.54 -6.53 6.11 -9.47 -0.06 -6.58 16 21 H 0.42 4.26 8.96 -40.82 -0.37 3.89 16 22 N -0.40 -7.64 12.22 30.99 0.38 -7.26 16 23 O 0.08 1.55 11.29 18.00 0.20 1.75 16 24 H 0.09 1.48 6.95 -51.93 -0.36 1.12 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 31 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 287.29 15.07 4.33 4.33 Total: -1.00 -30.35 287.29 -6.58 -36.93 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.61 Total: 0.99 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.43 Total: -11.13 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.94 Total: -48.49 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.75 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.35 -6.58 -36.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235101239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.086 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds