Wall clock time and date at job start Mon Mar 30 2020 05:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47233 * 2 1 4 4 C 1.53009 * 109.46772 * 119.99644 * 2 1 3 5 5 C 1.50705 * 109.46966 * 294.99763 * 4 2 1 6 6 H 1.08003 * 119.99519 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00152 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99489 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00179 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47249 * 89.99825 * 9 7 5 11 11 H 1.48506 * 109.47121 * 209.99811 * 9 7 5 12 12 H 1.48503 * 109.47219 * 329.99786 * 9 7 5 13 13 C 1.50699 * 109.47062 * 239.99284 * 2 1 3 14 14 N 1.30928 * 126.40080 * 120.32734 * 13 2 1 15 15 C 1.35391 * 105.57531 * 180.12037 * 14 13 2 16 16 C 1.47772 * 126.44715 * 179.84465 * 15 14 13 17 17 C 1.36301 * 126.07215 * 359.88087 * 16 15 14 18 18 C 1.40317 * 107.31471 * 180.21897 * 17 16 15 19 19 C 1.35145 * 107.70054 * 359.77627 * 18 17 16 20 20 N 1.36103 * 108.51810 * 359.97438 * 19 18 17 21 21 H 0.97001 * 125.69328 * 179.97438 * 20 19 18 22 22 N 1.31024 * 107.10006 * 359.57820 * 15 14 13 23 23 O 1.21287 * 110.05292 * 0.26994 * 22 15 14 24 24 H 1.08999 * 109.46907 * 300.00420 * 1 2 3 25 25 H 1.09003 * 109.46737 * 60.00519 * 1 2 3 26 26 H 1.09001 * 109.47042 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47250 * 54.99712 * 4 2 1 28 28 H 1.08996 * 109.46592 * 175.00091 * 4 2 1 29 29 H 0.97001 * 119.99543 * 179.97438 * 8 7 5 30 30 H 1.07994 * 126.34353 * 359.97438 * 17 16 15 31 31 H 1.07994 * 126.14667 * 179.79654 * 18 17 16 32 32 H 1.07998 * 125.74440 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0572 2.4767 6 1 1.0800 0.9744 2.3756 7 6 1.9931 -0.4014 3.7284 8 7 2.6762 -1.5185 3.8513 9 14 1.4983 0.5631 5.2496 10 1 0.1714 0.0940 5.7233 11 1 2.5078 0.3539 6.3185 12 1 1.4225 2.0083 4.9165 13 6 2.0324 -0.7106 -1.2304 14 7 2.7930 -0.2005 -2.1660 15 6 2.9835 -1.1967 -3.0629 16 6 3.7746 -1.1172 -4.3085 17 6 4.4455 -0.0218 -4.7646 18 6 5.0539 -0.3797 -5.9773 19 6 4.7465 -1.6721 -6.2255 20 7 3.9675 -2.1340 -5.2095 21 1 3.6054 -3.0309 -5.1367 22 7 2.3390 -2.2461 -2.6158 23 8 1.7899 -1.9814 -1.5672 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.6054 -1.7197 1.2954 28 1 3.1263 -0.7994 1.2057 29 1 2.9241 -1.8409 4.7320 30 1 4.4958 0.9439 -4.2839 31 1 5.6592 0.2621 -6.6000 32 1 5.0653 -2.2425 -7.0854 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235101239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:22 Heat of formation + Delta-G solvation = 77.012029 kcal Electronic energy + Delta-G solvation = -16954.231019 eV Core-core repulsion = 14110.631638 eV Total energy + Delta-G solvation = -2843.599382 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.106 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -46.56228 -42.03141 -37.58671 -36.69670 -34.54603 -32.70648 -31.97678 -30.04479 -29.00041 -26.28369 -25.36775 -24.42260 -22.41271 -21.28225 -21.19582 -19.14937 -19.11552 -18.58224 -17.86095 -16.51051 -16.18906 -15.45515 -15.35876 -14.93880 -14.69828 -14.43189 -13.95432 -13.73272 -13.43460 -13.17176 -13.07768 -12.93968 -12.78382 -12.65358 -12.27125 -12.23620 -11.97269 -11.71385 -11.25724 -11.01800 -10.54380 -9.98912 -9.10721 -8.17513 -6.28286 -0.16300 0.58836 1.47717 1.48454 1.59278 1.65677 1.77860 1.87930 2.09163 2.45275 2.72927 2.95246 3.18231 3.91028 4.15555 4.26861 4.30437 4.38730 4.43431 4.56810 4.70839 4.76716 5.03497 5.06760 5.16709 5.28497 5.36564 5.40889 5.57678 5.80035 5.80173 5.92160 6.16322 6.49824 6.85819 7.00635 7.41221 8.95157 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.046948 B = 0.004279 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.259364 B = 6541.502559 C = 6597.025156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.008 3.992 3 H 0.116 0.884 4 C 0.036 3.964 5 C -0.528 4.528 6 H 0.080 0.920 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.223 3.777 14 N -0.497 5.497 15 C 0.237 3.763 16 C 0.026 3.974 17 C -0.134 4.134 18 C -0.218 4.218 19 C 0.041 3.959 20 N -0.541 5.541 21 H 0.426 0.574 22 N -0.416 5.416 23 O 0.061 5.939 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.006 0.994 28 H -0.013 1.013 29 H 0.263 0.737 30 H 0.141 0.859 31 H 0.171 0.829 32 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 1.359 -17.985 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.012 4.012 3 H 0.133 0.867 4 C -0.002 4.002 5 C -0.566 4.566 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.181 1.181 13 C 0.003 3.997 14 N -0.231 5.231 15 C -0.032 4.032 16 C -0.087 4.087 17 C -0.162 4.162 18 C -0.242 4.242 19 C -0.094 4.094 20 N -0.137 5.137 21 H 0.264 0.736 22 N -0.131 5.131 23 O 0.009 5.991 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.024 0.976 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.189 0.811 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.905 0.630 -18.402 18.435 hybrid contribution -0.162 -0.370 1.375 1.433 sum 0.743 0.260 -17.026 17.045 Atomic orbital electron populations 1.21748 0.90593 1.02909 1.03414 1.20219 0.98443 0.98400 0.84132 0.86655 1.19049 0.94574 0.95503 0.91093 1.21507 1.35207 1.09102 0.90771 0.90174 1.25962 0.94948 0.95960 1.02843 1.70123 1.39931 1.23062 1.24509 0.85413 0.77830 0.79469 0.78151 1.19721 1.21635 1.18136 1.29553 0.91209 0.81592 0.97338 1.72022 1.18264 1.29346 1.03499 1.23330 0.97967 0.85575 0.96370 1.16835 1.08637 0.92298 0.90910 1.21244 0.99579 0.97447 0.97960 1.21268 1.07676 0.96758 0.98501 1.22836 0.96454 0.96308 0.93772 1.42021 1.41302 1.12332 1.18037 0.73562 1.74872 1.15480 1.23475 0.99224 1.85204 1.54838 1.30095 1.29003 0.89455 0.91241 0.92543 0.97607 0.99473 0.92875 0.84129 0.81131 0.76363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 8.99 71.98 0.65 -3.61 16 2 C 0.01 0.33 2.81 -11.53 -0.03 0.30 16 3 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 4 C 0.04 1.80 4.43 29.85 0.13 1.94 16 5 C -0.53 -27.65 8.41 25.60 0.22 -27.44 16 6 H 0.08 3.84 7.06 -2.91 -0.02 3.82 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.94 -55.71 13.29 21.45 0.28 -55.42 16 9 Si 0.97 42.27 29.54 68.60 2.03 44.29 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 13 C 0.22 8.93 7.00 88.35 0.62 9.55 16 14 N -0.50 -19.79 11.57 -302.26 -3.50 -23.28 16 15 C 0.24 8.85 8.05 136.97 1.10 9.95 16 16 C 0.03 0.78 7.12 40.37 0.29 1.07 16 17 C -0.13 -3.60 10.79 22.32 0.24 -3.36 16 18 C -0.22 -4.15 10.83 22.06 0.24 -3.91 16 19 C 0.04 0.65 11.92 83.32 0.99 1.64 16 20 N -0.54 -11.90 6.11 -183.88 -1.12 -13.02 16 21 H 0.43 7.94 8.96 -92.71 -0.83 7.10 16 22 N -0.42 -16.10 12.22 -58.78 -0.72 -16.81 16 23 O 0.06 2.49 11.29 74.46 0.84 3.33 16 24 H 0.09 2.86 6.95 -2.39 -0.02 2.85 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 28 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 32 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -67.38 287.29 3.03 -64.35 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.31 Total: 9.94 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 4.91 Total: -13.37 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -5.05 Total: -108.55 kcal Atomic # 8 Polarization: 2.49 SS G_CDS: 0.84 Total: 3.33 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -67.38 3.03 -64.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235101239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.361 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds