Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47098 * 300.00420 * 3 2 1 6 6 H 1.48496 * 109.47021 * 60.00649 * 3 2 1 7 7 C 1.37878 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00266 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00049 * 174.85315 * 10 9 7 12 12 H 1.08994 * 109.21806 * 34.88221 * 11 10 9 13 13 C 1.52729 * 109.25465 * 275.42683 * 11 10 9 14 14 C 1.53320 * 108.37281 * 188.53761 * 13 11 10 15 15 C 1.52720 * 108.40878 * 69.86501 * 14 13 11 16 16 C 1.50653 * 110.60337 * 308.91233 * 15 14 13 17 17 C 1.38958 * 117.69614 * 197.43606 * 16 15 14 18 18 C 1.37835 * 120.62423 * 180.63634 * 17 16 15 19 19 C 1.38762 * 119.71746 * 359.97438 * 18 17 16 20 20 O 1.35900 * 120.17733 * 179.90826 * 19 18 17 21 21 C 1.38436 * 119.64590 * 359.87977 * 19 18 17 22 22 C 1.37713 * 122.53450 * 17.82276 * 16 15 14 23 23 H 0.96995 * 119.99952 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46938 * 60.00491 * 9 7 2 25 25 H 1.09002 * 109.47213 * 300.00718 * 9 7 2 26 26 H 1.00895 * 111.00094 * 298.80864 * 10 9 7 27 27 H 1.09006 * 109.68216 * 308.25578 * 13 11 10 28 28 H 1.09001 * 109.68436 * 68.81711 * 13 11 10 29 29 H 1.08998 * 109.68230 * 189.59474 * 14 13 11 30 30 H 1.08999 * 109.68132 * 310.10167 * 14 13 11 31 31 H 1.08996 * 109.25199 * 188.62675 * 15 14 13 32 32 H 1.08995 * 109.24737 * 69.20122 * 15 14 13 33 33 H 1.08003 * 119.68908 * 0.61360 * 17 16 15 34 34 H 1.07999 * 120.14304 * 179.70589 * 18 17 16 35 35 H 0.96695 * 114.00112 * 89.99803 * 20 19 18 36 36 H 1.07999 * 119.74207 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5094 -4.9035 0.1225 12 1 0.5581 -4.8491 -0.4065 13 6 1.2489 -5.1962 1.5987 14 6 0.7202 -6.6301 1.7210 15 6 1.8603 -7.5938 1.3987 16 6 2.5116 -7.2259 0.0910 17 6 3.3002 -8.1865 -0.5305 18 6 3.9350 -7.9100 -1.7223 19 6 3.7851 -6.6609 -2.3079 20 8 4.4083 -6.3776 -3.4819 21 6 2.9970 -5.7051 -1.6900 22 6 2.3574 -5.9872 -0.4906 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.7855 -3.5956 -0.8259 27 1 2.1771 -5.0978 2.1618 28 1 0.5078 -4.4973 1.9863 29 1 0.3674 -6.8059 2.7373 30 1 -0.0984 -6.7809 1.0173 31 1 1.4657 -8.6075 1.3309 32 1 2.6033 -7.5504 2.1949 33 1 3.4172 -9.1589 -0.0752 34 1 4.5499 -8.6607 -2.1962 35 1 3.8839 -6.5887 -4.2664 36 1 2.8796 -4.7323 -2.1442 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236606112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = -31.220744 kcal Electronic energy + Delta-G solvation = -17669.765177 eV Core-core repulsion = 14925.012813 eV Total energy + Delta-G solvation = -2744.752364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21558 -37.85096 -35.60328 -34.28430 -32.64317 -30.67015 -29.45690 -27.95561 -25.86537 -23.22240 -22.62225 -22.04267 -20.76004 -19.43587 -17.96305 -16.49638 -15.94792 -15.77194 -15.14917 -14.72607 -14.44452 -14.15904 -13.94028 -13.51568 -13.10592 -12.69856 -12.35426 -12.13341 -12.09811 -11.95098 -11.39906 -11.20389 -10.82189 -10.79807 -10.67680 -10.48099 -10.35119 -10.06413 -9.78005 -9.14712 -8.74192 -8.47387 -8.27857 -7.28396 -6.02827 -4.04355 1.33067 1.44328 3.31888 3.39112 3.45068 3.67964 4.26457 4.44072 4.79551 4.82472 5.03327 5.05653 5.24481 5.31761 5.33489 5.44084 5.47456 5.70061 5.79047 5.89187 5.96685 5.99589 6.09104 6.17215 6.19567 6.43491 6.48882 6.62735 6.72391 6.81883 6.95436 7.24879 7.37278 7.70984 7.80394 8.12620 8.39524 8.58686 9.05153 9.60686 11.08234 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.005840 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.375748 B = 4793.463915 C = 5715.497881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.122 3.878 12 H 0.049 0.951 13 C -0.105 4.105 14 C -0.120 4.120 15 C -0.077 4.077 16 C -0.081 4.081 17 C -0.108 4.108 18 C -0.152 4.152 19 C 0.099 3.901 20 O -0.499 6.499 21 C -0.141 4.141 22 C -0.045 4.045 23 H 0.260 0.740 24 H -0.014 1.014 25 H 0.030 0.970 26 H 0.330 0.670 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.386 0.614 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.023 -17.255 -1.710 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.067 3.933 10 N -0.317 5.317 11 C 0.012 3.988 12 H 0.066 0.934 13 C -0.143 4.143 14 C -0.158 4.158 15 C -0.114 4.114 16 C -0.082 4.082 17 C -0.126 4.126 18 C -0.171 4.171 19 C 0.055 3.945 20 O -0.309 6.309 21 C -0.160 4.160 22 C -0.045 4.045 23 H 0.070 0.930 24 H 0.004 0.996 25 H 0.048 0.952 26 H 0.150 0.850 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.241 0.759 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.462 -16.866 -0.675 17.231 hybrid contribution -0.304 0.775 -1.340 1.578 sum 3.157 -16.091 -2.016 16.522 Atomic orbital electron populations 1.69971 1.06069 1.26664 1.51155 1.24986 0.94872 0.99358 0.95375 0.86433 0.80133 0.83328 0.77488 1.19629 1.21106 1.20986 1.21221 0.93630 0.90123 1.49993 0.91883 1.19632 0.90476 0.87412 0.95826 1.60863 1.24524 1.00677 1.45606 1.20347 0.94315 0.88553 0.95561 0.93370 1.21532 1.01892 0.94938 0.95925 1.21578 0.97422 0.95437 1.01408 1.20454 0.97705 0.99155 0.94055 1.19649 0.98516 0.93217 0.96819 1.20972 0.97371 0.99094 0.95213 1.21243 1.01856 0.96274 0.97696 1.18325 0.95002 0.92637 0.88512 1.84839 1.44607 1.87245 1.14204 1.21486 0.97592 1.00011 0.96888 1.19767 0.96715 0.94369 0.93675 0.92991 0.99639 0.95178 0.85024 0.90942 0.91212 0.91481 0.91938 0.91215 0.90613 0.85989 0.85847 0.75859 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.67 9.36 -34.44 -0.32 -14.99 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.19 5.08 5.20 -4.98 -0.03 5.05 16 10 N -0.68 -15.03 6.25 -109.40 -0.68 -15.72 16 11 C 0.12 2.24 2.53 -69.03 -0.17 2.06 16 12 H 0.05 0.93 7.84 -51.93 -0.41 0.52 16 13 C -0.10 -1.73 5.38 -26.70 -0.14 -1.87 16 14 C -0.12 -1.53 5.97 -26.71 -0.16 -1.69 16 15 C -0.08 -0.89 5.67 -28.05 -0.16 -1.05 16 16 C -0.08 -1.13 5.74 -104.57 -0.60 -1.73 16 17 C -0.11 -1.32 9.60 -39.46 -0.38 -1.70 16 18 C -0.15 -1.91 9.99 -39.54 -0.40 -2.30 16 19 C 0.10 1.41 6.70 -39.31 -0.26 1.15 16 20 O -0.50 -6.41 13.51 -19.43 -0.26 -6.67 16 21 C -0.14 -2.25 8.80 -39.29 -0.35 -2.60 16 22 C -0.04 -0.72 5.55 -104.63 -0.58 -1.30 16 23 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 24 H -0.01 -0.39 8.14 -51.93 -0.42 -0.82 16 25 H 0.03 0.84 7.45 -51.93 -0.39 0.45 16 26 H 0.33 7.07 6.08 -39.29 -0.24 6.83 16 27 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.07 1.24 7.58 -51.93 -0.39 0.84 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.12 1.15 8.05 -52.48 -0.42 0.73 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.39 3.00 9.06 45.56 0.41 3.41 16 36 H 0.13 2.16 6.51 -52.49 -0.34 1.82 16 LS Contribution 295.37 15.07 4.45 4.45 Total: -1.00 -31.86 295.37 -8.70 -40.56 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -4.28 Total: 6.16 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -3.65 Total: -19.48 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.05 Total: -41.93 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.26 Total: -6.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.86 -8.70 -40.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236606112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.339 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds