Wall clock time and date at job start Mon Mar 30 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00105 * 2 1 4 4 H 1.48505 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47098 * 300.00420 * 3 2 1 6 6 H 1.48496 * 109.47021 * 60.00649 * 3 2 1 7 7 C 1.37878 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00266 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.46906 * 111.00049 * 174.85315 * 10 9 7 12 12 H 1.08994 * 109.21806 * 34.88221 * 11 10 9 13 13 C 1.52729 * 109.25465 * 275.42683 * 11 10 9 14 14 C 1.53320 * 108.37281 * 188.53761 * 13 11 10 15 15 C 1.52720 * 108.40878 * 69.86501 * 14 13 11 16 16 C 1.50653 * 110.60337 * 308.91233 * 15 14 13 17 17 C 1.38958 * 117.69614 * 197.43606 * 16 15 14 18 18 C 1.37835 * 120.62423 * 180.63634 * 17 16 15 19 19 C 1.38762 * 119.71746 * 359.97438 * 18 17 16 20 20 O 1.35900 * 120.17733 * 179.90826 * 19 18 17 21 21 C 1.38436 * 119.64590 * 359.87977 * 19 18 17 22 22 C 1.37713 * 122.53450 * 17.82276 * 16 15 14 23 23 H 0.96995 * 119.99952 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46938 * 60.00491 * 9 7 2 25 25 H 1.09002 * 109.47213 * 300.00718 * 9 7 2 26 26 H 1.00895 * 111.00094 * 298.80864 * 10 9 7 27 27 H 1.09006 * 109.68216 * 308.25578 * 13 11 10 28 28 H 1.09001 * 109.68436 * 68.81711 * 13 11 10 29 29 H 1.08998 * 109.68230 * 189.59474 * 14 13 11 30 30 H 1.08999 * 109.68132 * 310.10167 * 14 13 11 31 31 H 1.08996 * 109.25199 * 188.62675 * 15 14 13 32 32 H 1.08995 * 109.24737 * 69.20122 * 15 14 13 33 33 H 1.08003 * 119.68908 * 0.61360 * 17 16 15 34 34 H 1.07999 * 120.14304 * 179.70589 * 18 17 16 35 35 H 0.96695 * 114.00112 * 89.99803 * 20 19 18 36 36 H 1.07999 * 119.74207 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 1.5094 -4.9035 0.1225 12 1 0.5581 -4.8491 -0.4065 13 6 1.2489 -5.1962 1.5987 14 6 0.7202 -6.6301 1.7210 15 6 1.8603 -7.5938 1.3987 16 6 2.5116 -7.2259 0.0910 17 6 3.3002 -8.1865 -0.5305 18 6 3.9350 -7.9100 -1.7223 19 6 3.7851 -6.6609 -2.3079 20 8 4.4083 -6.3776 -3.4819 21 6 2.9970 -5.7051 -1.6900 22 6 2.3574 -5.9872 -0.4906 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.7855 -3.5956 -0.8259 27 1 2.1771 -5.0978 2.1618 28 1 0.5078 -4.4973 1.9863 29 1 0.3674 -6.8059 2.7373 30 1 -0.0984 -6.7809 1.0173 31 1 1.4657 -8.6075 1.3309 32 1 2.6033 -7.5504 2.1949 33 1 3.4172 -9.1589 -0.0752 34 1 4.5499 -8.6607 -2.1962 35 1 3.8839 -6.5887 -4.2664 36 1 2.8796 -4.7323 -2.1442 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236606112.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:33 Heat of formation + Delta-G solvation = -53.690315 kcal Electronic energy + Delta-G solvation = -17670.739531 eV Core-core repulsion = 14925.012813 eV Total energy + Delta-G solvation = -2745.726717 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.34710 -38.98594 -37.04738 -35.60385 -34.59164 -32.14254 -30.58346 -29.39768 -27.68546 -24.62118 -23.92237 -23.47213 -22.23386 -20.57751 -19.22998 -18.41964 -17.24359 -16.93271 -16.75177 -16.16196 -15.93311 -15.54614 -15.15843 -14.77692 -14.40940 -14.31868 -13.80695 -13.63575 -13.55434 -13.08076 -13.00947 -12.75992 -12.59776 -12.39198 -12.08261 -11.81299 -11.71076 -11.61216 -11.23603 -11.06942 -10.70080 -9.89404 -9.38916 -9.07128 -8.25852 -6.37350 0.28257 0.35047 1.38416 1.39096 1.53526 2.37356 2.63259 3.06859 3.27158 3.51697 3.65529 3.80394 3.99396 4.12043 4.22505 4.32174 4.35680 4.42712 4.62895 4.74781 4.91295 4.95614 4.97261 5.04553 5.06464 5.15109 5.19754 5.27118 5.43226 5.44458 5.48527 5.60236 5.71253 5.92776 5.99576 6.40723 6.64498 6.82004 6.85051 7.33593 8.85826 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.005840 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.375748 B = 4793.463915 C = 5715.497881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.211 3.789 10 N -0.685 5.685 11 C 0.122 3.878 12 H 0.027 0.973 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.074 4.074 16 C -0.086 4.086 17 C -0.098 4.098 18 C -0.145 4.145 19 C 0.095 3.905 20 O -0.510 6.510 21 C -0.166 4.166 22 C -0.068 4.068 23 H 0.266 0.734 24 H -0.043 1.043 25 H 0.006 0.994 26 H 0.331 0.669 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.407 0.593 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -19.367 -1.335 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.084 3.916 10 N -0.317 5.317 11 C 0.013 3.987 12 H 0.045 0.955 13 C -0.141 4.141 14 C -0.151 4.151 15 C -0.110 4.110 16 C -0.086 4.086 17 C -0.116 4.116 18 C -0.164 4.164 19 C 0.051 3.949 20 O -0.323 6.323 21 C -0.185 4.185 22 C -0.069 4.069 23 H 0.075 0.925 24 H -0.025 1.025 25 H 0.024 0.976 26 H 0.151 0.849 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.180 0.820 34 H 0.171 0.829 35 H 0.266 0.734 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.843 -19.003 -0.315 19.613 hybrid contribution -0.736 1.364 -1.515 2.168 sum 4.107 -17.639 -1.830 18.203 Atomic orbital electron populations 1.70091 1.07743 1.28026 1.51448 1.25947 0.95821 1.03333 0.94444 0.85268 0.78772 0.78196 0.77961 1.18974 1.20083 1.20029 1.21534 0.93652 0.91476 1.50747 0.92213 1.19237 0.90391 0.88783 0.93211 1.60794 1.23836 1.01488 1.45579 1.20380 0.93685 0.87750 0.96935 0.95486 1.21504 1.00956 0.97534 0.94153 1.21549 0.97965 0.92674 1.02888 1.20534 0.97231 1.00257 0.93017 1.19963 0.98658 0.92332 0.97694 1.21385 0.95581 1.00045 0.94574 1.21596 1.01361 0.95788 0.97628 1.18428 0.94493 0.92981 0.89002 1.84775 1.45175 1.87557 1.14804 1.21438 0.99535 0.99928 0.97616 1.19595 0.97864 0.94965 0.94426 0.92501 1.02529 0.97610 0.84931 0.91699 0.93685 0.89129 0.92037 0.87757 0.89443 0.82021 0.82930 0.73415 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.54 -32.00 9.36 25.60 0.24 -31.76 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.21 11.91 5.20 85.56 0.45 12.36 16 10 N -0.68 -32.15 6.25 -500.04 -3.13 -35.27 16 11 C 0.12 4.74 2.53 44.06 0.11 4.85 16 12 H 0.03 1.15 7.84 -2.39 -0.02 1.13 16 13 C -0.10 -3.53 5.38 30.61 0.16 -3.37 16 14 C -0.11 -2.70 5.97 30.61 0.18 -2.52 16 15 C -0.07 -1.47 5.67 29.74 0.17 -1.30 16 16 C -0.09 -2.18 5.74 -19.83 -0.11 -2.30 16 17 C -0.10 -1.99 9.60 22.35 0.21 -1.78 16 18 C -0.15 -3.16 9.99 22.30 0.22 -2.93 16 19 C 0.10 2.61 6.70 22.44 0.15 2.76 16 20 O -0.51 -12.56 13.51 -92.42 -1.25 -13.81 16 21 C -0.17 -5.47 8.80 22.46 0.20 -5.28 16 22 C -0.07 -2.23 5.55 -19.87 -0.11 -2.34 16 23 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 24 H -0.04 -2.60 8.14 -2.39 -0.02 -2.62 16 25 H 0.01 0.35 7.45 -2.39 -0.02 0.33 16 26 H 0.33 15.25 6.08 -89.70 -0.55 14.70 16 27 H 0.06 2.28 8.10 -2.38 -0.02 2.26 16 28 H 0.04 1.71 7.58 -2.39 -0.02 1.69 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 31 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.16 2.04 8.05 -2.91 -0.02 2.01 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.41 5.84 9.06 -74.06 -0.67 5.17 16 36 H 0.11 3.87 6.51 -2.91 -0.02 3.85 16 Total: -1.00 -71.48 295.37 0.15 -71.33 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.13 Total: 20.36 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 2.34 Total: -32.98 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -2.84 Total: -92.52 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.25 Total: -13.81 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.48 0.15 -71.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236606112.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.641 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds