Wall clock time and date at job start Mon Mar 30 2020 06:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99849 * 2 1 4 4 H 1.48502 * 109.46717 * 239.99795 * 3 2 1 5 5 H 1.48497 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46828 * 119.99796 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.39945 * 119.99973 * 180.02562 * 11 10 9 13 13 C 1.38879 * 120.08699 * 359.72224 * 12 11 10 14 14 C 1.37931 * 119.87872 * 179.84506 * 13 12 11 15 15 C 1.39139 * 120.31497 * 0.54032 * 14 13 12 16 16 C 1.38360 * 119.81645 * 359.59057 * 15 14 13 17 17 C 1.38489 * 119.89673 * 0.16668 * 16 15 14 18 18 C 1.50784 * 121.40878 * 180.32366 * 16 15 14 19 19 C 1.53064 * 109.69439 * 342.17469 * 18 16 15 20 20 C 1.53406 * 108.29704 * 48.23204 * 19 18 16 21 21 O 1.35977 * 118.41058 * 179.44345 * 15 14 13 22 22 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46932 * 59.99631 * 9 7 2 24 24 H 1.09005 * 109.47238 * 300.00008 * 9 7 2 25 25 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 26 26 H 1.09005 * 109.47124 * 300.00226 * 10 9 7 27 27 H 0.96999 * 119.99984 * 359.97438 * 11 10 9 28 28 H 1.07997 * 120.06448 * 0.09908 * 13 12 11 29 29 H 1.07995 * 119.84287 * 180.28711 * 14 13 12 30 30 H 1.08006 * 119.86200 * 179.97438 * 17 16 15 31 31 H 1.09008 * 109.42940 * 102.24233 * 18 16 15 32 32 H 1.09000 * 109.43164 * 222.10153 * 18 16 15 33 33 H 1.09004 * 109.69129 * 167.92763 * 19 18 16 34 34 H 1.08992 * 109.69599 * 288.52610 * 19 18 16 35 35 H 1.08993 * 109.68801 * 54.97292 * 20 19 18 36 36 H 1.09002 * 109.68456 * 175.50082 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5127 -4.9307 -0.0001 12 6 2.2125 -6.1427 0.0003 13 6 3.6013 -6.1448 -0.0045 14 6 4.2866 -7.3418 -0.0008 15 6 3.5932 -8.5481 -0.0036 16 6 2.2096 -8.5463 -0.0015 17 6 1.5209 -7.3448 -0.0002 18 6 1.4222 -9.8321 0.0028 19 6 2.3221 -10.9896 -0.4368 20 6 3.6327 -10.9087 0.3563 21 8 4.3077 -9.7050 -0.0114 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8895 27 1 0.5428 -4.9308 0.0000 28 1 4.1437 -5.2109 -0.0069 29 1 5.3666 -7.3427 0.0002 30 1 0.4408 -7.3440 0.0010 31 1 1.0484 -10.0251 1.0085 32 1 0.5814 -9.7448 -0.6853 33 1 1.8265 -11.9385 -0.2317 34 1 2.5321 -10.9070 -1.5031 35 1 3.4154 -10.8962 1.4243 36 1 4.2591 -11.7687 0.1191 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258941926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:49 Heat of formation + Delta-G solvation = -32.051804 kcal Electronic energy + Delta-G solvation = -17022.092207 eV Core-core repulsion = 14277.303806 eV Total energy + Delta-G solvation = -2744.788401 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40765 -37.96191 -35.12434 -34.16882 -32.94207 -30.36686 -30.27585 -27.81588 -25.44391 -24.65355 -22.95690 -22.38009 -20.82922 -19.50820 -17.49978 -16.85172 -16.47874 -16.03327 -15.24998 -14.53046 -14.39203 -14.32589 -14.09059 -13.94691 -13.30931 -13.08097 -12.88953 -12.66564 -12.25761 -11.91116 -11.64434 -11.24551 -11.08553 -10.93146 -10.83975 -10.64331 -10.36636 -10.19819 -9.58717 -9.31592 -9.01482 -8.54880 -8.43031 -6.69328 -6.09957 -4.13395 1.57157 1.92158 3.29580 3.33879 3.36204 3.48695 4.04468 4.08234 4.42171 4.60968 4.64503 4.75028 5.01396 5.15133 5.26844 5.32068 5.40473 5.49707 5.58622 5.65144 5.78042 5.91329 5.98949 6.18289 6.27289 6.30575 6.36045 6.65100 6.69837 6.73112 6.95059 7.45379 7.63050 7.66357 7.81471 7.97331 8.20007 8.37732 8.92467 9.51413 11.01670 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.060712 B = 0.003643 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.083538 B = 7684.828040 C = 8094.011110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.014 3.986 10 C 0.126 3.874 11 N -0.742 5.742 12 C 0.205 3.795 13 C -0.168 4.168 14 C -0.095 4.095 15 C 0.053 3.947 16 C -0.110 4.110 17 C -0.178 4.178 18 C -0.077 4.077 19 C -0.158 4.158 20 C 0.063 3.937 21 O -0.323 6.323 22 H 0.263 0.737 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.396 0.604 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.051 -20.212 0.358 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.024 4.024 10 C 0.003 3.997 11 N -0.370 5.370 12 C 0.099 3.901 13 C -0.191 4.191 14 C -0.115 4.115 15 C 0.007 3.993 16 C -0.111 4.111 17 C -0.201 4.201 18 C -0.114 4.114 19 C -0.196 4.196 20 C -0.012 4.012 21 O -0.238 6.238 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.230 0.770 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.213 -19.908 0.309 20.351 hybrid contribution -0.262 0.926 0.056 0.963 sum 3.951 -18.983 0.365 19.393 Atomic orbital electron populations 1.69950 1.06122 1.26988 1.50192 1.25005 0.94886 0.99415 0.94984 0.86577 0.79528 0.82707 0.78746 1.20104 1.21229 1.20102 1.21015 0.93110 0.90491 1.51592 0.92377 1.19266 0.94269 0.91028 0.97805 1.21659 0.96272 0.82398 0.99361 1.45190 1.08246 1.02939 1.80609 1.17856 0.91563 0.86464 0.94230 1.20520 0.92412 0.97850 1.08342 1.20298 0.99608 0.89435 1.02123 1.18323 0.89432 0.85576 1.05953 1.19425 0.92278 0.95029 1.04413 1.20260 0.99083 0.90157 1.10594 1.20453 0.97588 0.91319 1.02082 1.22215 0.96820 0.99151 1.01412 1.22811 0.93921 0.86108 0.98384 1.85967 1.38717 1.13938 1.85153 0.92771 0.96038 0.96034 0.93424 0.93416 0.76980 0.85300 0.85761 0.86354 0.90715 0.90277 0.90272 0.90585 0.92418 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 10 C 0.13 2.59 4.86 -4.05 -0.02 2.57 16 11 N -0.74 -13.32 5.74 -58.63 -0.34 -13.66 16 12 C 0.20 3.42 6.65 -83.75 -0.56 2.86 16 13 C -0.17 -2.73 9.31 -39.46 -0.37 -3.10 16 14 C -0.10 -1.43 9.93 -39.36 -0.39 -1.83 16 15 C 0.05 0.78 6.47 -39.20 -0.25 0.52 16 16 C -0.11 -1.53 5.75 -104.44 -0.60 -2.13 16 17 C -0.18 -2.64 9.51 -39.32 -0.37 -3.02 16 18 C -0.08 -0.80 5.85 -27.81 -0.16 -0.96 16 19 C -0.16 -1.38 6.19 -26.49 -0.16 -1.55 16 20 C 0.06 0.60 7.03 37.37 0.26 0.87 16 21 O -0.32 -4.37 10.27 -19.67 -0.20 -4.57 16 22 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.97 7.96 -51.93 -0.41 0.56 16 26 H 0.05 0.98 7.95 -51.93 -0.41 0.56 16 27 H 0.40 6.74 8.49 -40.82 -0.35 6.40 16 28 H 0.13 2.05 6.75 -52.49 -0.35 1.70 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 30 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -30.06 299.82 -8.78 -38.84 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.30 Total: 2.96 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.18 Total: -18.75 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.40 Total: -39.26 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.20 Total: -4.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.06 -8.78 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258941926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.792 kcal (2) G-P(sol) polarization free energy of solvation -30.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds