Wall clock time and date at job start Mon Mar 30 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99849 * 2 1 4 4 H 1.48502 * 109.46717 * 239.99795 * 3 2 1 5 5 H 1.48497 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46828 * 119.99796 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00042 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47257 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47267 * 180.02562 * 10 9 7 12 12 C 1.39945 * 119.99973 * 180.02562 * 11 10 9 13 13 C 1.38879 * 120.08699 * 359.72224 * 12 11 10 14 14 C 1.37931 * 119.87872 * 179.84506 * 13 12 11 15 15 C 1.39139 * 120.31497 * 0.54032 * 14 13 12 16 16 C 1.38360 * 119.81645 * 359.59057 * 15 14 13 17 17 C 1.38489 * 119.89673 * 0.16668 * 16 15 14 18 18 C 1.50784 * 121.40878 * 180.32366 * 16 15 14 19 19 C 1.53064 * 109.69439 * 342.17469 * 18 16 15 20 20 C 1.53406 * 108.29704 * 48.23204 * 19 18 16 21 21 O 1.35977 * 118.41058 * 179.44345 * 15 14 13 22 22 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46932 * 59.99631 * 9 7 2 24 24 H 1.09005 * 109.47238 * 300.00008 * 9 7 2 25 25 H 1.09004 * 109.47330 * 60.00023 * 10 9 7 26 26 H 1.09005 * 109.47124 * 300.00226 * 10 9 7 27 27 H 0.96999 * 119.99984 * 359.97438 * 11 10 9 28 28 H 1.07997 * 120.06448 * 0.09908 * 13 12 11 29 29 H 1.07995 * 119.84287 * 180.28711 * 14 13 12 30 30 H 1.08006 * 119.86200 * 179.97438 * 17 16 15 31 31 H 1.09008 * 109.42940 * 102.24233 * 18 16 15 32 32 H 1.09000 * 109.43164 * 222.10153 * 18 16 15 33 33 H 1.09004 * 109.69129 * 167.92763 * 19 18 16 34 34 H 1.08992 * 109.69599 * 288.52610 * 19 18 16 35 35 H 1.08993 * 109.68801 * 54.97292 * 20 19 18 36 36 H 1.09002 * 109.68456 * 175.50082 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 7 1.5127 -4.9307 -0.0001 12 6 2.2125 -6.1427 0.0003 13 6 3.6013 -6.1448 -0.0045 14 6 4.2866 -7.3418 -0.0008 15 6 3.5932 -8.5481 -0.0036 16 6 2.2096 -8.5463 -0.0015 17 6 1.5209 -7.3448 -0.0002 18 6 1.4222 -9.8321 0.0028 19 6 2.3221 -10.9896 -0.4368 20 6 3.6327 -10.9087 0.3563 21 8 4.3077 -9.7050 -0.0114 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8719 -3.6043 -0.8895 27 1 0.5428 -4.9308 0.0000 28 1 4.1437 -5.2109 -0.0069 29 1 5.3666 -7.3427 0.0002 30 1 0.4408 -7.3440 0.0010 31 1 1.0484 -10.0251 1.0085 32 1 0.5814 -9.7448 -0.6853 33 1 1.8265 -11.9385 -0.2317 34 1 2.5321 -10.9070 -1.5031 35 1 3.4154 -10.8962 1.4243 36 1 4.2591 -11.7687 0.1191 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258941926.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:48 Heat of formation + Delta-G solvation = -49.642384 kcal Electronic energy + Delta-G solvation = -17022.854992 eV Core-core repulsion = 14277.303806 eV Total energy + Delta-G solvation = -2745.551186 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44371 -39.15170 -36.61792 -35.14479 -34.79741 -32.03246 -31.32064 -29.25592 -26.50536 -26.29826 -24.19669 -23.53596 -22.49468 -20.53847 -18.65515 -18.54779 -17.69566 -17.45637 -16.50458 -16.16314 -15.76083 -15.65200 -15.28526 -14.97254 -14.45224 -14.32296 -14.04876 -14.00149 -13.70843 -13.24776 -13.19186 -12.81051 -12.61976 -12.46731 -12.06179 -11.83387 -11.68834 -11.53676 -11.38270 -11.25318 -10.61224 -10.27288 -9.67065 -8.24487 -7.97959 -6.35833 0.41470 0.72932 1.41271 1.44112 1.51970 2.36824 2.53610 2.72455 2.91979 3.10238 3.76656 3.86768 3.93405 4.05694 4.32218 4.36966 4.43692 4.50599 4.54548 4.61798 4.70570 4.78813 4.88883 4.97780 5.03760 5.08254 5.18796 5.23298 5.39658 5.46537 5.56673 5.59129 5.72291 5.81285 6.12142 6.45013 6.69707 6.78929 6.95834 7.34059 8.87683 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.060712 B = 0.003643 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.083538 B = 7684.828040 C = 8094.011110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.022 3.978 10 C 0.149 3.851 11 N -0.747 5.747 12 C 0.181 3.819 13 C -0.181 4.181 14 C -0.105 4.105 15 C 0.050 3.950 16 C -0.113 4.113 17 C -0.177 4.177 18 C -0.080 4.080 19 C -0.153 4.153 20 C 0.052 3.948 21 O -0.337 6.337 22 H 0.265 0.735 23 H -0.001 1.001 24 H -0.001 1.001 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.398 0.602 28 H 0.124 0.876 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -21.829 0.447 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.016 4.016 10 C 0.024 3.976 11 N -0.377 5.377 12 C 0.078 3.922 13 C -0.204 4.204 14 C -0.124 4.124 15 C 0.005 3.995 16 C -0.115 4.115 17 C -0.200 4.200 18 C -0.117 4.117 19 C -0.190 4.190 20 C -0.023 4.023 21 O -0.253 6.253 22 H 0.074 0.926 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.233 0.767 28 H 0.142 0.858 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.938 -21.575 0.400 22.137 hybrid contribution -0.474 1.249 0.036 1.336 sum 4.464 -20.327 0.437 20.816 Atomic orbital electron populations 1.70079 1.07807 1.28048 1.51131 1.25955 0.95778 1.03395 0.94418 0.85456 0.78237 0.77830 0.79278 1.19103 1.20850 1.19077 1.21486 0.93762 0.91770 1.51399 0.91699 1.19094 0.94471 0.92429 0.95573 1.21181 0.94925 0.82212 0.99238 1.44926 1.08195 1.02546 1.82048 1.18046 0.91908 0.86404 0.95891 1.20582 0.92437 0.98287 1.09112 1.20482 1.00405 0.89421 1.02141 1.18517 0.89974 0.86123 1.04918 1.19846 0.92373 0.96297 1.02959 1.20495 0.99937 0.89864 1.09727 1.20586 0.97744 0.90031 1.03327 1.22217 0.96203 0.99920 1.00698 1.23194 0.94870 0.85153 0.99042 1.85950 1.39622 1.14577 1.85119 0.92618 0.98247 0.98216 0.93514 0.93549 0.76720 0.85770 0.84498 0.84903 0.89298 0.89218 0.87073 0.91311 0.91706 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.55 -30.58 9.11 25.60 0.23 -30.34 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 9 C 0.02 1.13 5.09 29.85 0.15 1.28 16 10 C 0.15 6.25 4.86 86.38 0.42 6.67 16 11 N -0.75 -27.40 5.74 -339.40 -1.95 -29.35 16 12 C 0.18 6.07 6.65 38.11 0.25 6.33 16 13 C -0.18 -5.92 9.31 22.35 0.21 -5.72 16 14 C -0.11 -3.12 9.93 22.41 0.22 -2.90 16 15 C 0.05 1.43 6.47 22.52 0.15 1.57 16 16 C -0.11 -2.96 5.75 -19.75 -0.11 -3.07 16 17 C -0.18 -5.12 9.51 22.44 0.21 -4.91 16 18 C -0.08 -1.42 5.85 29.90 0.18 -1.25 16 19 C -0.15 -2.15 6.19 30.75 0.19 -1.96 16 20 C 0.05 0.83 7.03 72.12 0.51 1.34 16 21 O -0.34 -8.48 10.27 -93.29 -0.96 -9.44 16 22 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 23 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 24 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 25 H 0.05 1.95 7.96 -2.38 -0.02 1.93 16 26 H 0.05 1.94 7.95 -2.38 -0.02 1.92 16 27 H 0.40 13.95 8.49 -92.71 -0.79 13.16 16 28 H 0.12 4.05 6.75 -2.91 -0.02 4.03 16 29 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 30 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.79 299.82 2.75 -62.03 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.28 Total: 18.97 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 3.07 Total: -32.33 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -1.66 Total: -84.90 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: -0.96 Total: -9.44 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -64.79 2.75 -62.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258941926.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.391 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds