Wall clock time and date at job start Mon Mar 30 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35958 * 117.00190 * 2 1 4 4 C 1.39555 * 120.15939 * 269.98178 * 3 2 1 5 5 N 1.37826 * 133.50502 * 359.97438 * 4 3 2 6 6 H 0.97009 * 125.07714 * 0.06408 * 5 4 3 7 7 C 1.36761 * 109.84680 * 180.02562 * 5 4 3 8 8 C 1.34257 * 109.90929 * 0.02562 * 7 5 4 9 9 C 1.40496 * 119.32128 * 180.02562 * 4 3 2 10 10 C 1.39779 * 119.95955 * 359.96690 * 9 4 3 11 11 C 1.36595 * 119.86436 * 359.80660 * 10 9 4 12 12 C 1.38197 * 120.15731 * 89.99957 * 3 2 1 13 13 C 1.50699 * 119.69880 * 359.95881 * 12 3 2 14 14 H 1.09004 * 109.47103 * 34.99909 * 13 12 3 15 15 O 1.42905 * 109.46972 * 154.99722 * 13 12 3 16 16 C 1.50703 * 109.47227 * 274.99868 * 13 12 3 17 17 H 1.07997 * 119.99722 * 359.97438 * 16 13 12 18 18 C 1.37873 * 119.99873 * 180.02562 * 16 13 12 19 19 N 1.31512 * 120.00006 * 180.02562 * 18 16 13 20 20 Si 1.86800 * 120.00328 * 0.02562 * 18 16 13 21 21 H 1.48501 * 109.47509 * 89.99743 * 20 18 16 22 22 H 1.48494 * 109.47205 * 210.00004 * 20 18 16 23 23 H 1.48501 * 109.47041 * 330.00003 * 20 18 16 24 24 H 1.09005 * 109.47142 * 299.99853 * 1 2 3 25 25 H 1.09004 * 109.47178 * 59.99799 * 1 2 3 26 26 H 1.08997 * 109.47288 * 180.02562 * 1 2 3 27 27 H 1.08005 * 125.04694 * 179.97438 * 7 5 4 28 28 H 1.08004 * 126.49311 * 179.97438 * 8 7 5 29 29 H 1.08002 * 120.06998 * 180.02562 * 10 9 4 30 30 H 1.08000 * 119.71564 * 180.24094 * 11 10 9 31 31 H 0.96702 * 113.99404 * 60.00156 * 15 13 12 32 32 H 0.97001 * 120.00117 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 2.3649 1.8359 -1.2066 5 7 2.1896 1.4901 -2.5293 6 1 1.7722 0.6718 -2.8409 7 6 2.6913 2.4734 -3.3366 8 6 3.1973 3.4661 -2.5877 9 6 3.0032 3.0873 -1.1861 10 6 3.3115 3.6937 0.0350 11 6 2.9875 3.0689 1.2057 12 6 2.3614 1.8300 1.1949 13 6 2.0170 1.1561 2.4981 14 1 2.1282 0.0772 2.3898 15 8 2.8951 1.6249 3.5234 16 6 0.5928 1.4795 2.8699 17 1 -0.0031 2.1103 2.2269 18 6 0.0510 0.9710 4.0312 19 7 -1.1920 1.2528 4.3554 20 14 1.0824 -0.1183 5.1443 21 1 1.7946 0.7235 6.1390 22 1 0.1997 -1.0803 5.8516 23 1 2.0731 -0.8640 4.3272 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 2.6826 2.4538 -4.4165 28 1 3.6600 4.3723 -2.9499 29 1 3.8018 4.6558 0.0529 30 1 3.2233 3.5414 2.1478 31 1 2.8493 2.5789 3.6746 32 1 -1.5731 0.8953 5.1727 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259341301.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:26 Heat of formation + Delta-G solvation = -25.212579 kcal Electronic energy + Delta-G solvation = -18031.748129 eV Core-core repulsion = 15151.423204 eV Total energy + Delta-G solvation = -2880.324925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.95692 -38.29160 -36.64310 -34.98006 -32.33917 -30.99171 -29.29209 -28.79373 -26.98594 -25.77010 -22.81750 -22.06164 -20.36130 -20.07376 -18.05712 -17.38745 -16.54133 -15.64346 -15.11551 -15.01368 -14.73742 -14.42232 -13.75213 -13.46726 -13.18502 -13.07194 -12.82067 -12.49107 -11.87506 -11.53226 -11.44898 -11.36552 -10.88241 -10.81348 -10.48329 -9.92216 -9.42594 -9.28404 -9.12413 -8.69139 -8.65559 -7.69640 -7.14221 -6.18478 -4.30107 1.48678 2.09689 2.93834 3.39521 3.43778 3.47106 3.61336 4.09344 4.46991 4.64055 4.99321 5.09090 5.25409 5.46256 5.62744 5.77933 5.78708 5.85496 5.97892 6.02600 6.14356 6.28657 6.39397 6.61437 6.83129 6.93919 6.99843 7.07302 7.39184 7.47852 7.48842 7.75580 8.17017 8.23271 8.74657 8.92422 9.43758 10.90663 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.033309 B = 0.007719 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.415776 B = 3626.570960 C = 4047.261432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.335 6.335 3 C 0.079 3.921 4 C 0.083 3.917 5 N -0.593 5.593 6 H 0.413 0.587 7 C 0.038 3.962 8 C -0.206 4.206 9 C -0.116 4.116 10 C -0.083 4.083 11 C -0.124 4.124 12 C -0.060 4.060 13 C 0.226 3.774 14 H 0.080 0.920 15 O -0.581 6.581 16 C -0.549 4.549 17 H 0.075 0.925 18 C 0.085 3.915 19 N -0.889 5.889 20 Si 0.910 3.090 21 H -0.277 1.277 22 H -0.305 1.305 23 H -0.266 1.266 24 H 0.087 0.913 25 H 0.025 0.975 26 H 0.082 0.918 27 H 0.164 0.836 28 H 0.142 0.858 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.361 0.639 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 2.031 -12.337 13.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.252 6.252 3 C 0.033 3.967 4 C -0.024 4.024 5 N -0.196 5.196 6 H 0.249 0.751 7 C -0.089 4.089 8 C -0.232 4.232 9 C -0.121 4.121 10 C -0.102 4.102 11 C -0.143 4.143 12 C -0.062 4.062 13 C 0.169 3.831 14 H 0.097 0.903 15 O -0.388 6.388 16 C -0.586 4.586 17 H 0.093 0.907 18 C -0.120 4.120 19 N -0.526 5.526 20 Si 0.739 3.261 21 H -0.203 1.203 22 H -0.233 1.233 23 H -0.191 1.191 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.182 0.818 28 H 0.159 0.841 29 H 0.136 0.864 30 H 0.143 0.857 31 H 0.209 0.791 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.151 1.099 -12.261 13.761 hybrid contribution -0.245 -0.108 0.241 0.361 sum 5.906 0.991 -12.020 13.429 Atomic orbital electron populations 1.23212 0.79141 1.02543 1.02108 1.85933 1.20106 1.24862 1.94284 1.17373 1.02489 0.88062 0.88763 1.18630 1.03524 0.95906 0.84320 1.41700 1.53643 1.20120 1.04113 0.75072 1.21688 1.01273 0.89836 0.96070 1.21585 1.09837 1.00896 0.90877 1.19026 1.04618 0.94799 0.93642 1.20184 1.00245 0.99329 0.90441 1.20359 1.01028 0.94991 0.97875 1.20943 0.95208 0.94035 0.96037 1.18936 0.89369 0.94811 0.80006 0.90266 1.86445 1.66294 1.27371 1.58663 1.21327 0.95445 1.33427 1.08432 0.90669 1.24988 0.94578 0.95085 0.97345 1.69941 1.13665 1.44196 1.24765 0.86292 0.79204 0.80005 0.80567 1.20310 1.23266 1.19056 0.89421 0.95676 0.89987 0.81825 0.84054 0.86377 0.85696 0.79119 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.13 101.05 1.12 1.58 16 2 O -0.34 -6.90 9.53 -19.61 -0.19 -7.09 16 3 C 0.08 1.64 5.71 -39.11 -0.22 1.42 16 4 C 0.08 1.52 7.22 -83.83 -0.61 0.92 16 5 N -0.59 -8.50 6.07 -10.57 -0.06 -8.56 16 6 H 0.41 4.95 8.96 -40.82 -0.37 4.58 16 7 C 0.04 0.46 11.82 -16.76 -0.20 0.26 16 8 C -0.21 -2.85 11.08 -37.67 -0.42 -3.27 16 9 C -0.12 -2.02 6.37 -105.15 -0.67 -2.69 16 10 C -0.08 -1.41 10.05 -39.60 -0.40 -1.81 16 11 C -0.12 -2.33 9.23 -39.96 -0.37 -2.70 16 12 C -0.06 -1.30 5.02 -104.42 -0.52 -1.82 16 13 C 0.23 5.45 2.25 -29.03 -0.07 5.39 16 14 H 0.08 2.06 6.72 -51.93 -0.35 1.71 16 15 O -0.58 -13.37 10.68 -35.23 -0.38 -13.74 16 16 C -0.55 -14.79 7.47 -34.44 -0.26 -15.05 16 17 H 0.08 2.20 7.56 -52.49 -0.40 1.80 16 18 C 0.09 2.38 5.47 -17.82 -0.10 2.28 16 19 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 20 Si 0.91 22.93 26.18 -169.99 -4.45 18.48 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 24 H 0.09 1.94 5.62 -51.93 -0.29 1.65 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.13 2.11 6.36 -52.49 -0.33 1.78 16 31 H 0.36 7.18 7.28 45.56 0.33 7.51 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 271.25 15.07 4.09 4.09 Total: -1.00 -32.04 271.25 -5.60 -37.64 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.69 Total: 10.06 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -2.70 Total: -15.50 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.71 Total: -33.93 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.56 Total: -20.83 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.45 Total: 18.48 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.04 -5.60 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259341301.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.426 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds