Wall clock time and date at job start Mon Mar 30 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35953 * 116.99604 * 2 1 4 4 C 1.39555 * 120.15552 * 270.01357 * 3 2 1 5 5 N 1.37819 * 133.50751 * 359.97438 * 4 3 2 6 6 H 0.97007 * 125.07550 * 359.97438 * 5 4 3 7 7 C 1.36763 * 109.84535 * 179.75361 * 5 4 3 8 8 C 1.34260 * 109.90938 * 0.40931 * 7 5 4 9 9 C 1.40509 * 119.31631 * 179.97438 * 4 3 2 10 10 C 1.39779 * 119.95670 * 0.02562 * 9 4 3 11 11 C 1.36593 * 119.86975 * 0.02562 * 10 9 4 12 12 C 1.38203 * 120.15474 * 90.00377 * 3 2 1 13 13 C 1.50698 * 119.70311 * 0.03317 * 12 3 2 14 14 H 1.08999 * 109.47339 * 324.98463 * 13 12 3 15 15 O 1.42894 * 109.46980 * 204.98175 * 13 12 3 16 16 C 1.50705 * 109.46862 * 84.98449 * 13 12 3 17 17 H 1.07999 * 119.99824 * 359.97438 * 16 13 12 18 18 C 1.37877 * 119.99940 * 180.02562 * 16 13 12 19 19 N 1.31510 * 119.99612 * 179.97438 * 18 16 13 20 20 Si 1.86797 * 119.99745 * 359.97438 * 18 16 13 21 21 H 1.48502 * 109.47331 * 90.00501 * 20 18 16 22 22 H 1.48512 * 109.46740 * 210.00010 * 20 18 16 23 23 H 1.48500 * 109.47513 * 329.99639 * 20 18 16 24 24 H 1.09000 * 109.47271 * 300.00220 * 1 2 3 25 25 H 1.09000 * 109.47453 * 60.00305 * 1 2 3 26 26 H 1.09004 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.07993 * 125.04590 * 180.29785 * 7 5 4 28 28 H 1.08002 * 126.49420 * 179.87254 * 8 7 5 29 29 H 1.08005 * 120.06060 * 179.97438 * 10 9 4 30 30 H 1.07993 * 119.71536 * 179.97438 * 11 10 9 31 31 H 0.96698 * 114.00232 * 299.99772 * 15 13 12 32 32 H 0.97008 * 119.99488 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2114 0.0000 4 6 2.3641 1.8362 -1.2067 5 7 2.1882 1.4907 -2.5292 6 1 1.7719 0.6718 -2.8409 7 6 2.6840 2.4770 -3.3366 8 6 3.1942 3.4676 -2.5877 9 6 3.0013 3.0883 -1.1861 10 6 3.3104 3.6942 0.0350 11 6 2.9921 3.0665 1.2057 12 6 2.3613 1.8300 1.1950 13 6 2.0186 1.1553 2.4982 14 1 1.0802 0.6114 2.3900 15 8 1.8822 2.1412 3.5235 16 6 3.1171 0.1928 2.8697 17 1 3.9772 0.0806 2.2262 18 6 3.0237 -0.5452 4.0305 19 7 3.9821 -1.3855 4.3544 20 14 1.5357 -0.3516 5.1431 21 1 0.4849 -1.3193 4.7373 22 1 1.9324 -0.6129 6.5502 23 1 1.0070 1.0312 5.0265 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.6691 2.4605 -4.4163 28 1 3.6552 4.3746 -2.9499 29 1 3.8006 4.6564 0.0528 30 1 3.2324 3.5367 2.1477 31 1 2.6812 2.6646 3.6747 32 1 3.9161 -1.9050 5.1709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259341308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:29 Heat of formation + Delta-G solvation = -19.984169 kcal Electronic energy + Delta-G solvation = -17963.754985 eV Core-core repulsion = 15083.656781 eV Total energy + Delta-G solvation = -2880.098204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98269 -38.36025 -36.71237 -34.97344 -32.22296 -31.02816 -29.27348 -28.84564 -26.92737 -26.06628 -22.75021 -22.13244 -20.39476 -20.07355 -18.06900 -17.35892 -16.62076 -15.62051 -15.19821 -15.08589 -14.79489 -14.41271 -13.80755 -13.51892 -13.30190 -13.07782 -12.70568 -12.63840 -11.85550 -11.82179 -11.43309 -11.23826 -11.06178 -10.79097 -10.37434 -10.07255 -9.57593 -9.23880 -8.99372 -8.62707 -8.41875 -7.70847 -7.16767 -6.07351 -4.17084 1.46891 2.07645 2.92256 3.37888 3.39945 3.49167 3.74219 4.05303 4.47378 4.55549 4.98348 5.18068 5.27072 5.41972 5.49892 5.60009 5.69534 5.78519 5.81546 5.85866 5.98355 6.13279 6.26999 6.36676 6.77467 6.92625 6.98272 7.05539 7.36819 7.44733 7.56149 7.73708 8.09805 8.34391 8.84681 9.03380 9.55091 11.03315 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.031902 B = 0.007558 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.471050 B = 3703.934582 C = 4019.055062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.319 6.319 3 C 0.076 3.924 4 C 0.084 3.916 5 N -0.593 5.593 6 H 0.413 0.587 7 C 0.038 3.962 8 C -0.205 4.205 9 C -0.117 4.117 10 C -0.081 4.081 11 C -0.124 4.124 12 C -0.058 4.058 13 C 0.231 3.769 14 H 0.067 0.933 15 O -0.578 6.578 16 C -0.543 4.543 17 H 0.074 0.926 18 C 0.084 3.916 19 N -0.891 5.891 20 Si 0.866 3.134 21 H -0.287 1.287 22 H -0.294 1.294 23 H -0.218 1.218 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.089 0.911 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.357 0.643 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 8.170 -12.536 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.235 6.235 3 C 0.030 3.970 4 C -0.023 4.023 5 N -0.196 5.196 6 H 0.249 0.751 7 C -0.089 4.089 8 C -0.231 4.231 9 C -0.121 4.121 10 C -0.100 4.100 11 C -0.143 4.143 12 C -0.060 4.060 13 C 0.174 3.826 14 H 0.084 0.916 15 O -0.385 6.385 16 C -0.580 4.580 17 H 0.092 0.908 18 C -0.120 4.120 19 N -0.528 5.528 20 Si 0.692 3.308 21 H -0.213 1.213 22 H -0.221 1.221 23 H -0.140 1.140 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.108 0.892 27 H 0.182 0.818 28 H 0.160 0.840 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.205 0.795 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.862 7.533 -12.455 15.691 hybrid contribution -0.319 -0.259 0.244 0.478 sum -6.181 7.274 -12.211 15.499 Atomic orbital electron populations 1.22947 0.80840 1.02592 0.99938 1.86195 1.18482 1.24776 1.94095 1.17370 1.03004 0.87757 0.88860 1.18616 1.03553 0.95864 0.84294 1.41699 1.53875 1.19905 1.04092 0.75063 1.21689 1.01347 0.89753 0.96079 1.21587 1.09637 1.01033 0.90851 1.19028 1.04655 0.94782 0.93664 1.20199 0.99923 0.99462 0.90427 1.20369 1.00788 0.95208 0.97932 1.20966 0.95639 0.93383 0.96019 1.18720 0.97802 0.85990 0.80061 0.91552 1.86718 1.40860 1.52594 1.58318 1.21278 1.06012 1.22515 1.08180 0.90760 1.24961 0.96218 0.93457 0.97343 1.69949 1.33084 1.24989 1.24799 0.87108 0.83288 0.81336 0.79042 1.21349 1.22080 1.14027 0.93383 0.94912 0.89246 0.81799 0.84023 0.86312 0.85602 0.79498 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.78 101.05 1.09 1.59 16 2 O -0.32 -6.54 9.68 -19.59 -0.19 -6.73 16 3 C 0.08 1.58 5.71 -39.10 -0.22 1.35 16 4 C 0.08 1.52 7.22 -83.83 -0.61 0.92 16 5 N -0.59 -8.40 6.07 -10.57 -0.06 -8.46 16 6 H 0.41 4.86 8.96 -40.82 -0.37 4.50 16 7 C 0.04 0.45 11.82 -16.75 -0.20 0.25 16 8 C -0.21 -2.81 11.08 -37.67 -0.42 -3.23 16 9 C -0.12 -2.01 6.37 -105.15 -0.67 -2.68 16 10 C -0.08 -1.37 10.05 -39.60 -0.40 -1.77 16 11 C -0.12 -2.34 9.23 -39.96 -0.37 -2.71 16 12 C -0.06 -1.26 5.02 -104.42 -0.52 -1.78 16 13 C 0.23 5.61 2.26 -29.03 -0.07 5.54 16 14 H 0.07 1.66 5.80 -51.93 -0.30 1.35 16 15 O -0.58 -13.17 9.79 -35.23 -0.34 -13.52 16 16 C -0.54 -15.51 9.33 -34.44 -0.32 -15.83 16 17 H 0.07 2.36 7.98 -52.49 -0.42 1.94 16 18 C 0.08 2.46 5.47 -17.82 -0.10 2.37 16 19 N -0.89 -27.59 13.96 55.43 0.77 -26.81 16 20 Si 0.87 21.85 26.99 -169.99 -4.59 17.26 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.22 -5.32 5.31 56.52 0.30 -5.02 16 24 H 0.05 0.79 7.16 -51.93 -0.37 0.42 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.12 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.13 2.12 6.36 -52.49 -0.33 1.79 16 31 H 0.36 7.12 7.28 45.56 0.33 7.45 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 272.65 15.07 4.11 4.11 Total: -1.00 -34.29 272.65 -5.91 -40.20 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.81 Total: 9.93 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -2.80 Total: -15.98 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.71 Total: -35.28 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.53 Total: -20.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.59 Total: 17.26 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -34.29 -5.91 -40.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259341308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.221 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds