Wall clock time and date at job start Mon Mar 30 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50704 * 109.47241 * 120.00150 * 2 1 3 5 5 N 1.29911 * 124.85109 * 119.96781 * 4 2 1 6 6 C 1.36078 * 108.79991 * 180.02562 * 5 4 2 7 7 C 1.39527 * 133.73279 * 179.97438 * 6 5 4 8 8 C 1.38305 * 119.66982 * 180.02562 * 7 6 5 9 9 O 1.35798 * 119.86537 * 179.97438 * 8 7 6 10 10 C 1.34823 * 116.99853 * 5.55602 * 9 8 7 11 11 H 1.07999 * 119.99996 * 354.93995 * 10 9 8 12 12 C 1.38636 * 120.00039 * 174.66580 * 10 9 8 13 13 N 1.31568 * 120.00280 * 180.27024 * 12 10 9 14 14 Si 1.86802 * 119.99913 * 0.27418 * 12 10 9 15 15 H 1.48502 * 109.47254 * 90.00213 * 14 12 10 16 16 H 1.48503 * 109.47095 * 210.00011 * 14 12 10 17 17 H 1.48494 * 109.47375 * 329.99629 * 14 12 10 18 18 C 1.39316 * 120.27297 * 0.26069 * 8 7 6 19 19 C 1.37789 * 120.41003 * 359.47867 * 18 8 7 20 20 C 1.38733 * 119.96824 * 0.52006 * 19 18 8 21 21 O 1.34218 * 124.84571 * 299.97897 * 4 2 1 22 22 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47255 * 300.00119 * 1 2 3 24 24 H 1.09002 * 109.46905 * 59.99698 * 1 2 3 25 25 H 1.09002 * 109.47394 * 239.99711 * 2 1 3 26 26 H 1.08998 * 109.47100 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47380 * 300.00012 * 3 2 1 28 28 H 1.08997 * 109.46834 * 60.00213 * 3 2 1 29 29 H 1.08000 * 120.16281 * 0.03270 * 7 6 5 30 30 H 0.97000 * 120.00317 * 179.97438 * 13 12 10 31 31 H 1.08001 * 119.79727 * 179.72243 * 18 8 7 32 32 H 1.08001 * 120.01741 * 180.25698 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 2.7819 -1.7715 1.2211 6 6 3.0402 -2.1374 2.5060 7 6 3.7722 -3.1745 3.0850 8 6 3.8434 -3.2763 4.4625 9 8 4.5543 -4.2844 5.0302 10 6 5.2582 -5.0800 4.2000 11 1 5.1754 -4.9526 3.1308 12 6 6.0927 -6.0580 4.7190 13 7 6.7837 -6.8309 3.9089 14 14 6.2359 -6.2784 6.5684 15 1 5.2163 -7.2538 7.0311 16 1 7.5917 -6.7833 6.9032 17 1 6.0138 -4.9733 7.2412 18 6 3.1839 -2.3522 5.2700 19 6 2.4633 -1.3220 4.7060 20 6 2.3828 -1.2071 3.3258 21 8 1.7691 -0.3374 2.4926 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 4.2808 -3.8942 2.4606 30 1 7.3678 -7.5148 4.2720 31 1 3.2410 -2.4416 6.3448 32 1 1.9579 -0.6069 5.3381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259382594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:51 Heat of formation + Delta-G solvation = 1.634645 kcal Electronic energy + Delta-G solvation = -17152.187722 eV Core-core repulsion = 14273.026980 eV Total energy + Delta-G solvation = -2879.160742 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.68143 -38.88406 -36.28191 -35.35875 -33.94061 -32.39832 -29.50745 -28.58699 -27.40249 -25.47840 -23.70085 -22.07972 -21.47497 -20.39275 -18.30705 -17.60484 -16.71496 -16.24250 -16.02418 -15.15979 -14.42558 -14.11926 -13.94968 -13.87561 -13.36998 -13.32795 -12.75326 -12.41722 -12.35532 -11.93287 -11.73166 -11.51523 -11.42040 -11.29003 -11.06276 -10.96234 -10.56714 -10.34869 -10.06178 -9.46234 -8.91760 -7.95481 -7.45707 -6.46833 -4.14629 1.21221 1.98907 2.90036 2.91982 3.19602 3.22054 3.35618 4.01228 4.18633 4.27543 4.65785 4.69137 4.85520 5.03006 5.04626 5.18109 5.39509 5.51232 5.54860 5.58407 5.70547 5.75526 5.79934 5.99280 6.00307 6.10510 6.25268 6.65469 6.74737 6.83310 6.93377 7.24472 7.70473 7.93375 8.13538 8.86756 9.44324 10.60195 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.045784 B = 0.005026 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.421304 B = 5569.900745 C = 5993.502989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.000 4.000 3 C -0.149 4.149 4 C 0.237 3.763 5 N -0.484 5.484 6 C 0.068 3.932 7 C -0.184 4.184 8 C 0.153 3.847 9 O -0.208 6.208 10 C -0.392 4.392 11 H 0.109 0.891 12 C 0.066 3.934 13 N -0.873 5.873 14 Si 0.906 3.094 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.258 1.258 18 C -0.139 4.139 19 C -0.060 4.060 20 C -0.068 4.068 21 O -0.218 6.218 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.112 0.888 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.145 0.855 30 H 0.281 0.719 31 H 0.138 0.862 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 13.354 -3.400 17.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 C -0.207 4.207 4 C 0.025 3.975 5 N -0.215 5.215 6 C -0.043 4.043 7 C -0.205 4.205 8 C 0.099 3.901 9 O -0.113 6.113 10 C -0.467 4.467 11 H 0.126 0.874 12 C -0.139 4.139 13 N -0.510 5.510 14 Si 0.732 3.268 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.182 1.182 18 C -0.158 4.158 19 C -0.079 4.079 20 C -0.116 4.116 21 O -0.110 6.110 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.130 0.870 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.658 12.760 -3.674 16.419 hybrid contribution 0.016 -0.009 1.160 1.160 sum -9.641 12.752 -2.514 16.183 Atomic orbital electron populations 1.21876 0.92870 1.02970 1.02925 1.19769 0.96577 0.95652 0.89957 1.21878 1.01939 0.93912 1.02923 1.26160 0.94347 0.92074 0.84928 1.70577 1.16421 1.12470 1.22037 1.19491 0.99883 0.97247 0.87653 1.20233 1.05584 1.00379 0.94279 1.18705 0.92549 0.88406 0.90442 1.83594 1.54982 1.36248 1.36463 1.20814 1.22424 1.12238 0.91222 0.87381 1.24484 0.94325 0.94779 1.00277 1.69654 1.26093 1.19691 1.35612 0.86168 0.77584 0.79638 0.83445 1.19764 1.20704 1.18240 1.20164 1.01235 0.94699 0.99727 1.19330 1.00969 0.99077 0.88554 1.20015 1.04143 0.94376 0.93107 1.84315 1.61971 1.48386 1.16346 0.91895 0.91768 0.91012 0.86959 0.91885 0.91005 0.91771 0.83715 0.90881 0.84449 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.18 37.16 0.34 -1.01 16 2 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 3 C -0.15 -1.36 9.18 37.16 0.34 -1.02 16 4 C 0.24 3.93 6.74 -13.09 -0.09 3.84 16 5 N -0.48 -9.82 11.34 -8.71 -0.10 -9.92 16 6 C 0.07 1.49 7.23 -84.71 -0.61 0.88 16 7 C -0.18 -4.30 9.21 -39.08 -0.36 -4.66 16 8 C 0.15 3.51 6.64 -39.16 -0.26 3.25 16 9 O -0.21 -5.38 8.58 -0.08 0.00 -5.38 16 10 C -0.39 -10.99 9.94 30.88 0.31 -10.68 16 11 H 0.11 3.16 5.42 -52.49 -0.28 2.87 16 12 C 0.07 1.82 5.49 -17.52 -0.10 1.72 16 13 N -0.87 -25.10 13.96 55.48 0.77 -24.32 16 14 Si 0.91 21.18 28.62 -169.99 -4.86 16.32 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 18 C -0.14 -2.64 9.97 -39.34 -0.39 -3.03 16 19 C -0.06 -1.05 10.05 -39.56 -0.40 -1.44 16 20 C -0.07 -1.32 7.43 -38.61 -0.29 -1.61 16 21 O -0.22 -3.85 10.77 3.47 0.04 -3.81 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.15 3.61 5.62 -52.49 -0.29 3.31 16 30 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 32 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 281.50 15.07 4.24 4.24 Total: -1.00 -31.09 281.50 -5.24 -36.33 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.52 Total: 0.61 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.82 Total: -14.08 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.68 Total: -34.25 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.04 Total: -9.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.86 Total: 16.32 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.09 -5.24 -36.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259382594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.968 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds