Wall clock time and date at job start Mon Mar 30 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50704 * 109.47241 * 120.00150 * 2 1 3 5 5 N 1.29911 * 124.85109 * 119.96781 * 4 2 1 6 6 C 1.36078 * 108.79991 * 180.02562 * 5 4 2 7 7 C 1.39527 * 133.73279 * 179.97438 * 6 5 4 8 8 C 1.38305 * 119.66982 * 180.02562 * 7 6 5 9 9 O 1.35798 * 119.86537 * 179.97438 * 8 7 6 10 10 C 1.34823 * 116.99853 * 5.55602 * 9 8 7 11 11 H 1.07999 * 119.99996 * 354.93995 * 10 9 8 12 12 C 1.38636 * 120.00039 * 174.66580 * 10 9 8 13 13 N 1.31568 * 120.00280 * 180.27024 * 12 10 9 14 14 Si 1.86802 * 119.99913 * 0.27418 * 12 10 9 15 15 H 1.48502 * 109.47254 * 90.00213 * 14 12 10 16 16 H 1.48503 * 109.47095 * 210.00011 * 14 12 10 17 17 H 1.48494 * 109.47375 * 329.99629 * 14 12 10 18 18 C 1.39316 * 120.27297 * 0.26069 * 8 7 6 19 19 C 1.37789 * 120.41003 * 359.47867 * 18 8 7 20 20 C 1.38733 * 119.96824 * 0.52006 * 19 18 8 21 21 O 1.34218 * 124.84571 * 299.97897 * 4 2 1 22 22 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47255 * 300.00119 * 1 2 3 24 24 H 1.09002 * 109.46905 * 59.99698 * 1 2 3 25 25 H 1.09002 * 109.47394 * 239.99711 * 2 1 3 26 26 H 1.08998 * 109.47100 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47380 * 300.00012 * 3 2 1 28 28 H 1.08997 * 109.46834 * 60.00213 * 3 2 1 29 29 H 1.08000 * 120.16281 * 0.03270 * 7 6 5 30 30 H 0.97000 * 120.00317 * 179.97438 * 13 12 10 31 31 H 1.08001 * 119.79727 * 179.72243 * 18 8 7 32 32 H 1.08001 * 120.01741 * 180.25698 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 2.7819 -1.7715 1.2211 6 6 3.0402 -2.1374 2.5060 7 6 3.7722 -3.1745 3.0850 8 6 3.8434 -3.2763 4.4625 9 8 4.5543 -4.2844 5.0302 10 6 5.2582 -5.0800 4.2000 11 1 5.1754 -4.9526 3.1308 12 6 6.0927 -6.0580 4.7190 13 7 6.7837 -6.8309 3.9089 14 14 6.2359 -6.2784 6.5684 15 1 5.2163 -7.2538 7.0311 16 1 7.5917 -6.7833 6.9032 17 1 6.0138 -4.9733 7.2412 18 6 3.1839 -2.3522 5.2700 19 6 2.4633 -1.3220 4.7060 20 6 2.3828 -1.2071 3.3258 21 8 1.7691 -0.3374 2.4926 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 4.2808 -3.8942 2.4606 30 1 7.3678 -7.5148 4.2720 31 1 3.2410 -2.4416 6.3448 32 1 1.9579 -0.6069 5.3381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259382594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:51 Heat of formation + Delta-G solvation = -20.380295 kcal Electronic energy + Delta-G solvation = -17153.142361 eV Core-core repulsion = 14273.026980 eV Total energy + Delta-G solvation = -2880.115381 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.19387 -40.67546 -37.80513 -36.54428 -35.38821 -34.45002 -31.15206 -30.19377 -28.11721 -27.40720 -25.03350 -23.73301 -23.05835 -21.60374 -20.18070 -19.38205 -18.34274 -17.73090 -17.48768 -16.52535 -15.87409 -15.79595 -15.73243 -15.24143 -14.87565 -14.43871 -14.27581 -14.16323 -13.62928 -13.17214 -13.03688 -12.84224 -12.70898 -12.63219 -12.39259 -12.13139 -11.99168 -11.96483 -11.78406 -11.32036 -10.93220 -9.52345 -9.22176 -8.54011 -6.30147 -0.30024 0.33137 1.33375 1.38130 1.42470 1.51279 1.54328 2.26826 2.56676 2.68971 2.88859 3.02517 3.58254 3.82173 3.95596 4.03089 4.12252 4.25407 4.35696 4.45717 4.72148 4.76348 4.86005 4.88859 4.97111 5.05950 5.14645 5.17889 5.25561 5.29293 5.38019 5.53367 5.62994 5.96028 6.62226 6.77706 7.42759 8.57419 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.045784 B = 0.005026 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.421304 B = 5569.900745 C = 5993.502989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.004 4.004 3 C -0.144 4.144 4 C 0.258 3.742 5 N -0.530 5.530 6 C 0.042 3.958 7 C -0.210 4.210 8 C 0.133 3.867 9 O -0.224 6.224 10 C -0.408 4.408 11 H 0.073 0.927 12 C 0.012 3.988 13 N -0.921 5.921 14 Si 0.978 3.022 15 H -0.263 1.263 16 H -0.268 1.268 17 H -0.252 1.252 18 C -0.134 4.134 19 C -0.034 4.034 20 C -0.067 4.067 21 O -0.208 6.208 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.106 0.894 25 H 0.119 0.881 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.287 0.713 31 H 0.174 0.826 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 16.306 -2.050 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 C -0.201 4.201 4 C 0.047 3.953 5 N -0.261 5.261 6 C -0.069 4.069 7 C -0.231 4.231 8 C 0.081 3.919 9 O -0.130 6.130 10 C -0.484 4.484 11 H 0.091 0.909 12 C -0.187 4.187 13 N -0.560 5.560 14 Si 0.799 3.201 15 H -0.188 1.188 16 H -0.193 1.193 17 H -0.176 1.176 18 C -0.152 4.152 19 C -0.053 4.053 20 C -0.117 4.117 21 O -0.100 6.100 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.125 0.875 25 H 0.137 0.863 26 H 0.069 0.931 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.191 0.809 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.832 15.745 -2.350 19.835 hybrid contribution 0.484 -0.658 0.498 0.956 sum -11.348 15.087 -1.852 18.969 Atomic orbital electron populations 1.21891 0.90664 1.02799 1.04771 1.20241 0.98242 0.96509 0.87341 1.21893 1.01173 0.92305 1.04774 1.27443 0.91523 0.90471 0.85908 1.70586 1.18943 1.14771 1.21776 1.19636 1.00449 0.97619 0.89152 1.20112 1.07136 1.01100 0.94786 1.19275 0.92795 0.88932 0.90850 1.83536 1.56279 1.37434 1.35775 1.20672 1.23748 1.13636 0.90300 0.90921 1.25407 0.93651 0.94102 1.05544 1.69749 1.27481 1.20878 1.37915 0.85119 0.78275 0.79848 0.76888 1.18756 1.19295 1.17612 1.20578 1.00042 0.93537 1.01088 1.19912 0.98839 0.98560 0.87954 1.20406 1.03387 0.93767 0.94100 1.84360 1.61467 1.47664 1.16547 0.93088 0.91604 0.87517 0.86272 0.93131 0.87501 0.91609 0.87305 0.90299 0.80891 0.79882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.18 71.98 0.66 -1.47 16 2 C 0.00 -0.08 3.39 -11.54 -0.04 -0.12 16 3 C -0.14 -2.14 9.18 71.98 0.66 -1.48 16 4 C 0.26 8.24 6.74 88.39 0.60 8.83 16 5 N -0.53 -21.96 11.34 -296.29 -3.36 -25.32 16 6 C 0.04 1.89 7.23 39.31 0.28 2.17 16 7 C -0.21 -10.51 9.21 22.60 0.21 -10.31 16 8 C 0.13 6.26 6.64 22.55 0.15 6.41 16 9 O -0.22 -11.93 8.58 -23.21 -0.20 -12.13 16 10 C -0.41 -24.37 9.94 67.92 0.68 -23.70 16 11 H 0.07 4.72 5.42 -2.91 -0.02 4.70 16 12 C 0.01 0.70 5.49 84.83 0.47 1.17 16 13 N -0.92 -55.53 13.96 21.61 0.30 -55.22 16 14 Si 0.98 44.25 28.62 68.60 1.96 46.22 16 15 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 18 C -0.13 -4.75 9.97 22.42 0.22 -4.53 16 19 C -0.03 -1.06 10.05 22.28 0.22 -0.84 16 20 C -0.07 -2.51 7.43 22.90 0.17 -2.34 16 21 O -0.21 -6.83 10.77 -10.48 -0.11 -6.94 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 6.12 5.62 -2.91 -0.02 6.10 16 30 H 0.29 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.17 4.91 8.06 -2.91 -0.02 4.88 16 32 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -73.26 281.50 4.01 -69.25 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.14 Total: 10.35 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 4.28 Total: -26.20 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -3.06 Total: -80.55 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.31 Total: -19.07 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.96 Total: 46.22 kcal Total: -73.26 4.01 -69.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259382594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.870 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds