Wall clock time and date at job start Mon Mar 30 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99946 * 2 1 4 4 H 1.48501 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47023 * 299.99783 * 3 2 1 6 6 H 1.48494 * 109.47598 * 59.99853 * 3 2 1 7 7 C 1.37880 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99550 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46751 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46922 * 179.97438 * 11 10 9 13 13 C 1.37753 * 119.67360 * 100.01935 * 12 11 10 14 14 C 1.39057 * 119.94816 * 179.97438 * 13 12 11 15 15 N 1.37826 * 133.40091 * 180.32131 * 14 13 12 16 16 H 0.96998 * 125.06416 * 359.92360 * 15 14 13 17 17 C 1.36810 * 109.86475 * 180.08338 * 15 14 13 18 18 C 1.34236 * 109.93931 * 359.61266 * 17 15 14 19 19 C 1.40666 * 119.47538 * 359.97438 * 14 13 12 20 20 C 1.39629 * 119.96279 * 0.02562 * 19 14 13 21 21 C 1.37827 * 119.63058 * 359.97438 * 20 19 14 22 22 F 1.35099 * 119.83433 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99848 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47531 * 59.99852 * 9 7 2 25 25 H 1.09001 * 109.47070 * 299.99670 * 9 7 2 26 26 H 1.08995 * 109.47412 * 59.99549 * 10 9 7 27 27 H 1.09004 * 109.46814 * 300.00083 * 10 9 7 28 28 H 1.08995 * 109.47503 * 59.99498 * 11 10 9 29 29 H 1.09001 * 109.46867 * 299.99457 * 11 10 9 30 30 H 1.07993 * 120.03005 * 0.02562 * 13 12 11 31 31 H 1.08002 * 125.03322 * 179.88638 * 17 15 14 32 32 H 1.08006 * 126.49434 * 180.22960 * 18 17 15 33 33 H 1.07999 * 120.18612 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4596 -6.1326 0.0018 13 6 2.7436 -6.7863 1.1806 14 6 3.6459 -7.8443 1.1877 15 7 4.1202 -8.6779 2.1775 16 1 3.8619 -8.6370 3.1116 17 6 5.0120 -9.5694 1.6468 18 6 5.1396 -9.3587 0.3272 19 6 4.2611 -8.2374 -0.0147 20 6 3.9638 -7.5658 -1.2022 21 6 3.0665 -6.5197 -1.1872 22 9 2.7762 -5.8666 -2.3336 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6040 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 0.8545 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 2.2653 -6.4780 2.0984 31 1 5.5327 -10.3327 2.2059 32 1 5.7702 -9.9114 -0.3535 33 1 4.4337 -7.8648 -2.1275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259416284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:24 Heat of formation + Delta-G solvation = -11.556491 kcal Electronic energy + Delta-G solvation = -16756.514776 eV Core-core repulsion = 13889.154813 eV Total energy + Delta-G solvation = -2867.359963 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.47277 -41.19846 -37.20277 -34.32378 -32.57504 -31.48805 -29.26234 -28.94823 -26.35495 -23.58576 -22.78877 -20.94719 -20.74539 -19.97015 -18.11790 -17.05265 -16.28700 -15.88596 -15.30921 -14.94634 -14.40796 -14.29996 -13.97134 -13.71241 -13.37728 -12.91625 -12.70987 -12.48015 -12.32121 -11.87791 -11.23965 -11.08669 -10.88519 -10.72163 -10.51902 -10.40638 -9.76483 -9.61344 -9.26567 -9.01005 -8.29564 -7.95531 -7.73179 -5.94684 -3.96360 1.03433 1.51438 2.61179 3.01691 3.34692 3.41897 3.46873 3.78142 4.41476 4.50924 4.68294 4.82956 4.99911 5.18412 5.35880 5.41110 5.43363 5.69336 5.77897 5.93028 6.04754 6.10744 6.23919 6.41568 6.45239 6.64341 6.67764 6.86907 6.95538 7.12491 7.22105 7.40217 7.74547 7.89620 8.06297 8.49619 9.10999 9.67328 11.16763 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.037087 B = 0.004285 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.796095 B = 6533.416824 C = 6749.475061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C -0.082 4.082 12 C -0.075 4.075 13 C -0.105 4.105 14 C 0.088 3.912 15 N -0.597 5.597 16 H 0.415 0.585 17 C 0.050 3.950 18 C -0.205 4.205 19 C -0.097 4.097 20 C -0.112 4.112 21 C 0.080 3.920 22 F -0.136 7.136 23 H 0.259 0.741 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.130 0.870 31 H 0.169 0.831 32 H 0.146 0.854 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -20.217 3.418 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.119 4.119 12 C -0.077 4.077 13 C -0.126 4.126 14 C -0.018 4.018 15 N -0.200 5.200 16 H 0.252 0.748 17 C -0.076 4.076 18 C -0.231 4.231 19 C -0.101 4.101 20 C -0.132 4.132 21 C 0.060 3.940 22 F -0.114 7.114 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.187 0.813 32 H 0.163 0.837 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.980 -20.092 3.498 21.900 hybrid contribution 0.337 1.037 0.259 1.121 sum 8.317 -19.055 3.758 21.128 Atomic orbital electron populations 1.69980 1.06033 1.26380 1.51240 1.25024 0.94839 0.99211 0.95446 0.86555 0.80170 0.83878 0.77530 1.19747 1.21014 1.21068 1.21315 0.93099 0.91109 1.50060 0.92676 1.19120 0.93994 0.91279 0.97239 1.21620 0.99064 0.92771 1.00605 1.20749 0.95946 0.92289 1.02954 1.19887 0.98972 0.97782 0.91032 1.19758 0.99335 0.95287 0.98215 1.18244 0.99671 0.95404 0.88511 1.41780 1.39039 1.29318 1.09877 0.74790 1.21785 0.95403 0.95835 0.94600 1.21630 1.05409 1.01120 0.94926 1.18847 1.00574 0.98686 0.92007 1.20338 0.98941 0.95876 0.98019 1.17218 0.99896 0.94644 0.82213 1.91497 1.92329 1.80083 1.47505 0.93132 0.96466 0.96609 0.93329 0.93112 0.90821 0.91002 0.85261 0.81340 0.83659 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.24 5.13 -26.73 -0.14 -2.38 16 11 C -0.08 -1.48 5.04 -27.88 -0.14 -1.62 16 12 C -0.07 -1.21 5.14 -104.52 -0.54 -1.75 16 13 C -0.11 -1.48 9.67 -39.45 -0.38 -1.86 16 14 C 0.09 1.14 7.27 -83.95 -0.61 0.53 16 15 N -0.60 -5.61 6.08 -10.64 -0.06 -5.67 16 16 H 0.42 2.64 8.96 -40.82 -0.37 2.27 16 17 C 0.05 0.42 11.81 -16.74 -0.20 0.22 16 18 C -0.21 -2.12 11.08 -37.67 -0.42 -2.54 16 19 C -0.10 -1.29 6.37 -105.14 -0.67 -1.96 16 20 C -0.11 -1.59 10.07 -39.21 -0.40 -1.99 16 21 C 0.08 1.31 7.22 -39.45 -0.28 1.03 16 22 F -0.14 -2.41 16.62 2.25 0.04 -2.37 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.35 7.92 -51.93 -0.41 0.94 16 29 H 0.07 1.20 7.98 -51.93 -0.41 0.79 16 30 H 0.13 1.57 8.02 -52.49 -0.42 1.15 16 31 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -33.08 290.88 -8.36 -41.44 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.11 Total: -2.33 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -4.32 Total: -25.83 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.67 Total: -32.44 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.08 -8.36 -41.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259416284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.888 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds