Wall clock time and date at job start Mon Mar 30 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99946 * 2 1 4 4 H 1.48501 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47023 * 299.99783 * 3 2 1 6 6 H 1.48494 * 109.47598 * 59.99853 * 3 2 1 7 7 C 1.37880 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99550 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46751 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46922 * 179.97438 * 11 10 9 13 13 C 1.37753 * 119.67360 * 100.01935 * 12 11 10 14 14 C 1.39057 * 119.94816 * 179.97438 * 13 12 11 15 15 N 1.37826 * 133.40091 * 180.32131 * 14 13 12 16 16 H 0.96998 * 125.06416 * 359.92360 * 15 14 13 17 17 C 1.36810 * 109.86475 * 180.08338 * 15 14 13 18 18 C 1.34236 * 109.93931 * 359.61266 * 17 15 14 19 19 C 1.40666 * 119.47538 * 359.97438 * 14 13 12 20 20 C 1.39629 * 119.96279 * 0.02562 * 19 14 13 21 21 C 1.37827 * 119.63058 * 359.97438 * 20 19 14 22 22 F 1.35099 * 119.83433 * 179.97438 * 21 20 19 23 23 H 0.97002 * 119.99848 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47531 * 59.99852 * 9 7 2 25 25 H 1.09001 * 109.47070 * 299.99670 * 9 7 2 26 26 H 1.08995 * 109.47412 * 59.99549 * 10 9 7 27 27 H 1.09004 * 109.46814 * 300.00083 * 10 9 7 28 28 H 1.08995 * 109.47503 * 59.99498 * 11 10 9 29 29 H 1.09001 * 109.46867 * 299.99457 * 11 10 9 30 30 H 1.07993 * 120.03005 * 0.02562 * 13 12 11 31 31 H 1.08002 * 125.03322 * 179.88638 * 17 15 14 32 32 H 1.08006 * 126.49434 * 180.22960 * 18 17 15 33 33 H 1.07999 * 120.18612 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0012 12 6 2.4596 -6.1326 0.0018 13 6 2.7436 -6.7863 1.1806 14 6 3.6459 -7.8443 1.1877 15 7 4.1202 -8.6779 2.1775 16 1 3.8619 -8.6370 3.1116 17 6 5.0120 -9.5694 1.6468 18 6 5.1396 -9.3587 0.3272 19 6 4.2611 -8.2374 -0.0147 20 6 3.9638 -7.5658 -1.2022 21 6 3.0665 -6.5197 -1.1872 22 9 2.7762 -5.8666 -2.3336 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6040 0.8922 27 1 2.8726 -3.6047 -0.8877 28 1 0.8545 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 2.2653 -6.4780 2.0984 31 1 5.5327 -10.3327 2.2059 32 1 5.7702 -9.9114 -0.3535 33 1 4.4337 -7.8648 -2.1275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259416284.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:24 Heat of formation + Delta-G solvation = -30.431696 kcal Electronic energy + Delta-G solvation = -16757.333266 eV Core-core repulsion = 13889.154813 eV Total energy + Delta-G solvation = -2868.178453 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.75165 -42.08867 -38.35741 -36.09697 -34.33717 -32.75514 -30.69765 -29.92698 -27.98630 -25.29865 -23.92315 -22.45706 -21.69300 -21.39216 -19.06715 -18.44450 -18.15691 -17.10322 -16.62898 -16.44671 -16.05485 -15.47121 -15.20664 -14.86254 -14.52261 -14.24740 -14.15596 -13.92709 -13.45702 -13.41779 -13.10601 -12.75330 -12.60680 -12.41819 -11.99615 -11.85181 -11.49706 -11.33177 -11.14404 -10.65964 -10.56223 -9.03339 -8.64649 -8.20346 -6.31740 0.02508 0.40276 1.38732 1.39704 1.53274 1.82955 2.24699 2.40791 2.70577 3.12116 3.37959 3.64876 3.81484 4.08397 4.14956 4.37297 4.41126 4.48238 4.60814 4.68398 4.83720 4.90119 5.04965 5.09628 5.14446 5.22478 5.26204 5.42872 5.51452 5.71990 5.75600 5.77597 5.85045 6.13376 6.25488 6.73304 6.84469 7.37223 8.91598 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.037087 B = 0.004285 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.796095 B = 6533.416824 C = 6749.475061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.088 4.088 11 C -0.070 4.070 12 C -0.101 4.101 13 C -0.098 4.098 14 C 0.075 3.925 15 N -0.586 5.586 16 H 0.432 0.568 17 C 0.078 3.922 18 C -0.230 4.230 19 C -0.110 4.110 20 C -0.114 4.114 21 C 0.051 3.949 22 F -0.154 7.154 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.001 1.001 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.219 0.781 32 H 0.166 0.834 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.190 -21.758 5.055 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.103 4.103 13 C -0.119 4.119 14 C -0.033 4.033 15 N -0.190 5.190 16 H 0.272 0.728 17 C -0.049 4.049 18 C -0.254 4.254 19 C -0.115 4.115 20 C -0.133 4.133 21 C 0.031 3.969 22 F -0.133 7.133 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.017 0.983 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.235 0.765 32 H 0.184 0.816 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.019 -21.654 5.159 24.410 hybrid contribution -0.247 1.362 -0.170 1.395 sum 9.772 -20.291 4.989 23.068 Atomic orbital electron populations 1.70105 1.07753 1.27745 1.51703 1.25987 0.95818 1.03347 0.94641 0.85385 0.78955 0.78666 0.77965 1.18822 1.20274 1.19942 1.21722 0.93425 0.92552 1.50580 0.92589 1.19025 0.94360 0.92884 0.94997 1.21369 0.97930 0.93129 1.00092 1.20494 0.96064 0.91347 1.02870 1.19664 1.00056 0.98435 0.92179 1.19873 0.99071 0.95090 0.97850 1.18288 0.99643 0.95687 0.89686 1.41906 1.38457 1.28375 1.10249 0.72848 1.22586 0.93202 0.94892 0.94201 1.21987 1.06062 1.00906 0.96439 1.19308 1.01024 0.99472 0.91743 1.20518 0.98277 0.95182 0.99337 1.17511 1.01607 0.96010 0.81813 1.91437 1.92703 1.80694 1.48461 0.92695 0.99192 0.98293 0.92891 0.94348 0.92108 0.89907 0.83640 0.76479 0.81642 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.35 13.29 21.45 0.28 -58.06 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 45.73 29.54 68.60 2.03 47.75 16 4 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -32.68 9.11 25.60 0.23 -32.44 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.36 4.97 29.85 0.15 1.51 16 10 C -0.09 -3.97 5.13 30.59 0.16 -3.81 16 11 C -0.07 -2.65 5.04 29.85 0.15 -2.50 16 12 C -0.10 -3.36 5.14 -19.80 -0.10 -3.47 16 13 C -0.10 -2.68 9.67 22.35 0.22 -2.46 16 14 C 0.07 1.78 7.27 38.99 0.28 2.07 16 15 N -0.59 -8.75 6.08 -187.58 -1.14 -9.89 16 16 H 0.43 3.69 8.96 -92.71 -0.83 2.86 16 17 C 0.08 0.92 11.81 83.00 0.98 1.90 16 18 C -0.23 -3.95 11.08 23.51 0.26 -3.69 16 19 C -0.11 -2.77 6.37 -20.20 -0.13 -2.89 16 20 C -0.11 -3.22 10.07 22.51 0.23 -2.99 16 21 C 0.05 1.71 7.22 22.35 0.16 1.88 16 22 F -0.15 -5.82 16.62 44.97 0.75 -5.07 16 23 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 24 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 25 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.06 2.39 7.92 -2.39 -0.02 2.37 16 29 H 0.08 2.85 7.98 -2.39 -0.02 2.84 16 30 H 0.15 3.33 8.02 -2.91 -0.02 3.31 16 31 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -73.61 290.88 5.26 -68.35 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 0.29 Total: 3.39 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 3.05 Total: -46.47 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -0.85 Total: -67.95 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.75 Total: -5.07 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.61 5.26 -68.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259416284.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.921 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds