Wall clock time and date at job start Mon Mar 30 2020 06:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36811 * 125.06680 * 2 1 4 4 C 1.34249 * 109.93459 * 180.02562 * 3 2 1 5 5 C 1.46489 * 107.00451 * 359.97438 * 4 3 2 6 6 C 1.39678 * 133.97117 * 180.02562 * 5 4 3 7 7 C 1.37782 * 119.63175 * 179.97438 * 6 5 4 8 8 F 1.35096 * 119.83549 * 179.97438 * 7 6 5 9 9 C 1.39042 * 120.33295 * 0.03047 * 7 6 5 10 10 C 1.50692 * 119.67558 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47139 * 280.01435 * 10 9 7 12 12 C 1.50693 * 109.47514 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00102 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00134 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99979 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99935 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.46930 * 59.99907 * 16 14 12 18 18 H 1.48503 * 109.46627 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46995 * 299.99756 * 16 14 12 20 20 C 1.37718 * 120.64648 * 359.96728 * 9 7 6 21 21 C 1.37817 * 125.06894 * 180.30722 * 2 1 3 22 22 H 1.09005 * 109.46960 * 89.97983 * 1 2 3 23 23 H 1.09005 * 109.46963 * 209.97863 * 1 2 3 24 24 H 1.08994 * 109.47560 * 329.97862 * 1 2 3 25 25 H 1.07994 * 125.03632 * 0.06631 * 3 2 1 26 26 H 1.07993 * 126.50097 * 179.97438 * 4 3 2 27 27 H 1.08001 * 120.18250 * 0.02562 * 6 5 4 28 28 H 1.08998 * 109.47751 * 40.01576 * 10 9 7 29 29 H 1.09008 * 109.47083 * 160.02048 * 10 9 7 30 30 H 1.08998 * 109.46914 * 300.00653 * 11 10 9 31 31 H 1.08997 * 109.46641 * 59.99828 * 11 10 9 32 32 H 0.96996 * 119.99929 * 179.97438 * 15 14 12 33 33 H 1.08002 * 120.01886 * 179.97438 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1198 0.0000 4 6 3.5469 0.7693 -0.0006 5 6 3.5948 -0.6948 -0.0003 6 6 4.6312 -1.6312 -0.0002 7 6 4.3337 -2.9765 0.0005 8 9 5.3329 -3.8858 0.0001 9 6 3.0104 -3.4031 0.0006 10 6 2.7019 -4.8781 0.0008 11 6 2.8432 -5.4290 -1.4196 12 6 2.5342 -6.9039 -1.4196 13 1 2.2636 -7.3989 -0.4987 14 6 2.5958 -7.6212 -2.5955 15 7 2.9247 -7.0183 -3.7170 16 14 2.2120 -9.4494 -2.5955 17 1 0.8227 -9.6635 -2.1170 18 1 2.3492 -9.9839 -3.9742 19 1 3.1598 -10.1541 -1.6953 20 6 1.9787 -2.4908 0.0005 21 6 2.2568 -1.1280 -0.0060 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3634 0.8897 0.5141 25 1 1.8834 2.1352 0.0010 26 1 4.3936 1.4396 -0.0011 27 1 5.6600 -1.3025 0.0001 28 1 3.3979 -5.3948 0.6617 29 1 1.6821 -5.0361 0.3520 30 1 2.1472 -4.9123 -2.0805 31 1 3.8629 -5.2710 -1.7708 32 1 2.9684 -7.5230 -4.5442 33 1 0.9545 -2.8334 0.0001 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259482538.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:17 Heat of formation + Delta-G solvation = -16.866603 kcal Electronic energy + Delta-G solvation = -17073.153143 eV Core-core repulsion = 14205.562916 eV Total energy + Delta-G solvation = -2867.590226 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.72758 -42.17966 -38.34982 -35.72598 -34.22032 -32.77660 -30.97028 -29.61950 -27.02449 -26.65592 -23.89600 -23.24034 -21.84099 -20.76732 -18.56880 -18.42828 -18.04867 -16.89058 -16.67478 -16.42383 -16.02038 -15.92861 -15.14083 -14.69666 -14.54107 -14.09746 -13.84602 -13.82604 -13.60349 -13.50447 -13.20422 -12.93787 -12.80979 -12.55411 -12.10337 -11.85261 -11.72519 -11.42290 -11.19882 -10.57638 -10.56456 -8.98559 -8.54227 -8.19784 -6.32997 0.03714 0.42254 1.39426 1.43932 1.51710 1.80581 1.93702 2.40903 2.72195 3.12405 3.40212 3.62381 3.87829 3.95628 4.06714 4.24824 4.46664 4.49229 4.54004 4.66788 4.75487 4.77030 4.80746 4.97390 5.07034 5.14644 5.23403 5.35781 5.46337 5.70866 5.74276 5.80811 5.81868 6.19408 6.22002 6.45305 6.82958 7.36279 8.91891 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.005229 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.808883 B = 5353.294860 C = 5863.458734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.489 5.489 3 C 0.071 3.929 4 C -0.224 4.224 5 C -0.113 4.113 6 C -0.112 4.112 7 C 0.047 3.953 8 F -0.155 7.155 9 C -0.101 4.101 10 C -0.061 4.061 11 C 0.039 3.961 12 C -0.545 4.545 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.970 3.030 17 H -0.262 1.262 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.103 4.103 21 C 0.073 3.927 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.117 0.883 25 H 0.217 0.783 26 H 0.170 0.830 27 H 0.149 0.851 28 H 0.057 0.943 29 H 0.076 0.924 30 H -0.009 1.009 31 H -0.017 1.017 32 H 0.264 0.736 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.722 18.503 9.036 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.172 5.172 3 C -0.055 4.055 4 C -0.248 4.248 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.027 3.973 8 F -0.134 7.134 9 C -0.103 4.103 10 C -0.098 4.098 11 C 0.002 3.998 12 C -0.583 4.583 13 H 0.083 0.917 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.123 4.123 21 C -0.034 4.034 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.135 0.865 25 H 0.233 0.767 26 H 0.187 0.813 27 H 0.167 0.833 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.010 0.990 31 H 0.001 0.999 32 H 0.073 0.927 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.044 18.481 8.863 21.108 hybrid contribution 0.346 -1.420 -0.477 1.538 sum -4.698 17.060 8.387 19.582 Atomic orbital electron populations 1.22253 0.74886 1.05856 1.04062 1.44175 1.07350 1.03482 1.62218 1.22559 0.89712 0.92304 1.00881 1.21955 0.97888 0.90757 1.14192 1.19297 0.91267 0.95310 1.05935 1.20514 1.00561 0.89341 1.02750 1.17547 0.84486 0.86818 1.08441 1.91419 1.60140 1.67303 1.94517 1.19876 0.91660 0.97057 1.01693 1.20463 1.01533 0.89201 0.98592 1.18866 0.94505 0.94941 0.91453 1.21650 1.46884 0.95074 0.94719 0.91746 1.26046 0.94798 1.04014 0.95018 1.70122 1.49314 1.38385 0.99686 0.85432 0.79344 0.78549 0.77301 1.18673 1.20740 1.19248 1.19781 0.99095 0.88926 1.04509 1.18324 0.91102 0.88647 1.05304 0.90651 0.90128 0.86485 0.76668 0.81286 0.83318 0.92438 0.90539 0.99048 0.99885 0.92726 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 11.03 127.77 1.41 2.33 16 2 N -0.49 -10.58 3.18 -539.24 -1.72 -12.30 16 3 C 0.07 1.21 11.29 83.01 0.94 2.15 16 4 C -0.22 -4.91 11.08 23.51 0.26 -4.65 16 5 C -0.11 -3.49 6.37 -20.19 -0.13 -3.62 16 6 C -0.11 -3.85 10.07 22.51 0.23 -3.62 16 7 C 0.05 1.94 7.22 22.35 0.16 2.10 16 8 F -0.15 -6.96 16.63 44.97 0.75 -6.22 16 9 C -0.10 -4.17 5.14 -19.80 -0.10 -4.27 16 10 C -0.06 -2.79 4.98 29.85 0.15 -2.64 16 11 C 0.04 2.26 4.95 29.85 0.15 2.41 16 12 C -0.55 -32.59 9.11 25.60 0.23 -32.36 16 13 H 0.06 3.64 7.74 -2.91 -0.02 3.61 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 16 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 C -0.10 -3.58 9.55 22.35 0.21 -3.37 16 21 C 0.07 2.24 6.81 38.99 0.27 2.50 16 22 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 23 H 0.08 1.11 8.10 -2.38 -0.02 1.09 16 24 H 0.12 0.72 8.13 -2.39 -0.02 0.70 16 25 H 0.22 1.45 8.06 -2.91 -0.02 1.42 16 26 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 28 H 0.06 2.66 7.93 -2.39 -0.02 2.64 16 29 H 0.08 3.21 7.98 -2.38 -0.02 3.19 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.14 4.26 8.02 -2.91 -0.02 4.24 16 Total: -1.00 -75.85 291.82 6.68 -69.18 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: 1.10 Total: 3.56 kcal Atomic # 6 Polarization: -46.87 SS G_CDS: 4.23 Total: -42.64 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -1.43 Total: -71.46 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.75 Total: -6.22 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.85 6.68 -69.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259482538.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.310 kcal (2) G-P(sol) polarization free energy of solvation -75.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds