Wall clock time and date at job start Mon Mar 30 2020 06:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36786 * 125.07041 * 2 1 4 4 C 1.34251 * 109.92439 * 180.02562 * 3 2 1 5 5 C 1.46486 * 107.00549 * 359.97438 * 4 3 2 6 6 C 1.39705 * 134.00778 * 180.02562 * 5 4 3 7 7 C 1.36606 * 119.80573 * 180.02562 * 6 5 4 8 8 C 1.38838 * 120.54658 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.68558 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47177 * 264.97936 * 9 8 7 11 11 C 1.50694 * 109.47142 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00449 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00028 * 179.97438 * 11 10 9 14 14 N 1.31526 * 119.99668 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00446 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47197 * 59.99476 * 15 13 11 17 17 H 1.48496 * 109.47605 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46833 * 299.99824 * 15 13 11 19 19 C 1.37945 * 120.63472 * 359.97438 * 8 7 6 20 20 F 1.35096 * 120.13020 * 180.02562 * 19 8 7 21 21 C 1.37771 * 125.07343 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46949 * 270.00201 * 1 2 3 23 23 H 1.08996 * 109.47337 * 29.99538 * 1 2 3 24 24 H 1.08994 * 109.47288 * 150.00151 * 1 2 3 25 25 H 1.08006 * 125.04510 * 0.03826 * 3 2 1 26 26 H 1.07993 * 126.49914 * 180.26115 * 4 3 2 27 27 H 1.08000 * 120.10201 * 359.95715 * 6 5 4 28 28 H 1.07998 * 119.72847 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.46692 * 24.97386 * 9 8 7 30 30 H 1.08996 * 109.47840 * 144.97668 * 9 8 7 31 31 H 1.09000 * 109.46635 * 300.00088 * 10 9 8 32 32 H 1.09004 * 109.46706 * 59.99363 * 10 9 8 33 33 H 0.96996 * 119.99533 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1195 0.0000 4 6 3.5468 0.7687 -0.0006 5 6 3.5944 -0.6953 -0.0003 6 6 4.6302 -1.6328 -0.0002 7 6 4.3382 -2.9673 -0.0005 8 6 3.0193 -3.4011 -0.0004 9 6 2.7193 -4.8779 -0.0002 10 6 2.4940 -5.3528 -1.4371 11 6 2.1947 -6.8297 -1.4369 12 1 2.1674 -7.3751 -0.5051 13 6 1.9546 -7.4846 -2.6262 14 7 1.9873 -6.8203 -3.7609 15 14 1.5828 -9.3152 -2.6260 16 1 0.3610 -9.5721 -1.8220 17 1 1.3631 -9.7759 -4.0205 18 1 2.7283 -10.0528 -2.0352 19 6 1.9807 -2.4931 0.0005 20 9 0.7012 -2.9264 0.0012 21 6 2.2567 -1.1275 -0.0005 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3633 -0.8899 -0.5138 25 1 1.8836 2.1352 0.0006 26 1 4.3937 1.4389 0.0033 27 1 5.6587 -1.3036 -0.0010 28 1 5.1398 -3.6910 -0.0009 29 1 3.5600 -5.4192 0.4338 30 1 1.8223 -5.0664 0.5896 31 1 1.6534 -4.8113 -1.8710 32 1 3.3911 -5.1642 -2.0269 33 1 1.8181 -7.2810 -4.5976 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259485424.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:15 Heat of formation + Delta-G solvation = 1.700285 kcal Electronic energy + Delta-G solvation = -17256.040477 eV Core-core repulsion = 14389.255371 eV Total energy + Delta-G solvation = -2866.785106 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.33862 -41.01804 -37.27070 -33.81116 -32.53185 -31.19573 -29.82528 -28.06292 -26.09298 -24.80364 -22.35219 -21.70369 -20.34697 -19.74168 -17.31849 -16.72802 -16.33735 -15.62426 -15.26218 -14.92027 -14.59019 -14.40380 -14.15273 -13.37318 -12.88724 -12.76565 -12.62862 -12.39433 -12.18226 -12.07705 -11.42722 -11.25668 -11.12956 -10.86166 -10.58191 -10.52066 -9.80592 -9.58882 -9.14459 -9.05829 -8.30680 -7.88542 -7.28433 -5.95521 -3.98490 1.30457 1.81597 2.77722 2.85226 3.36365 3.40366 3.43030 4.07861 4.49392 4.62988 4.74524 4.81159 4.92135 5.16037 5.33079 5.39862 5.42938 5.55185 5.60644 5.71736 5.97007 6.04160 6.27994 6.44857 6.66460 6.69361 6.86848 6.88900 6.97693 7.08320 7.33358 7.45399 7.71890 7.85936 8.04246 8.44497 9.07978 9.64975 11.15631 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036053 B = 0.005313 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.437552 B = 5269.292792 C = 5654.786854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.484 5.484 3 C 0.045 3.955 4 C -0.204 4.204 5 C -0.100 4.100 6 C -0.084 4.084 7 C -0.116 4.116 8 C -0.070 4.070 9 C -0.077 4.077 10 C 0.031 3.969 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.080 3.920 20 F -0.140 7.140 21 C 0.067 3.933 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.086 0.914 25 H 0.166 0.834 26 H 0.147 0.853 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.938 15.867 8.201 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.168 5.168 3 C -0.080 4.080 4 C -0.230 4.230 5 C -0.105 4.105 6 C -0.103 4.103 7 C -0.135 4.135 8 C -0.072 4.072 9 C -0.114 4.114 10 C -0.006 4.006 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.058 3.942 20 F -0.118 7.118 21 C -0.039 4.039 22 H 0.086 0.914 23 H 0.100 0.900 24 H 0.105 0.895 25 H 0.184 0.816 26 H 0.164 0.836 27 H 0.142 0.858 28 H 0.149 0.851 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.490 15.860 8.004 17.772 hybrid contribution -0.602 -0.974 -0.195 1.161 sum -0.112 14.886 7.809 16.811 Atomic orbital electron populations 1.22021 0.77060 1.04511 1.02984 1.43737 1.05904 1.03999 1.63128 1.21740 0.90562 0.90855 1.04842 1.21597 0.95832 0.92632 1.12896 1.18994 0.91064 0.93532 1.06887 1.20246 0.97789 0.91866 1.00383 1.20501 0.95414 0.95384 1.02179 1.20139 0.91742 0.97082 0.98206 1.20785 1.01183 0.87278 1.02161 1.19058 0.97285 0.95670 0.88582 1.21200 1.48005 0.93929 0.92776 0.92609 1.25021 0.95503 0.98234 0.95630 1.69973 1.49732 1.36033 0.97675 0.86647 0.78879 0.85489 0.76918 1.20257 1.21310 1.20191 1.16475 0.79342 0.88051 1.10302 1.91431 1.35725 1.90259 1.94428 1.18209 0.91307 0.86800 1.07608 0.91411 0.90046 0.89506 0.81639 0.83579 0.85796 0.85076 0.91560 0.91992 0.96477 0.96294 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.83 59.85 0.65 1.47 16 2 N -0.48 -6.82 3.18 -121.76 -0.39 -7.21 16 3 C 0.05 0.53 11.29 -16.75 -0.19 0.34 16 4 C -0.20 -2.59 11.08 -37.67 -0.42 -3.01 16 5 C -0.10 -1.60 6.37 -105.15 -0.67 -2.27 16 6 C -0.08 -1.28 10.05 -39.62 -0.40 -1.68 16 7 C -0.12 -1.97 9.59 -39.95 -0.38 -2.35 16 8 C -0.07 -1.37 5.14 -104.51 -0.54 -1.91 16 9 C -0.08 -1.68 5.04 -27.88 -0.14 -1.82 16 10 C 0.03 0.84 4.95 -27.88 -0.14 0.70 16 11 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.68 5.46 -17.81 -0.10 1.58 16 14 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 15 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.08 1.56 7.26 -39.29 -0.29 1.28 16 20 F -0.14 -2.84 15.10 2.25 0.03 -2.80 16 21 C 0.07 1.16 6.82 -83.91 -0.57 0.59 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.09 1.08 6.96 -51.93 -0.36 0.72 16 25 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 26 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 29 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 30 H 0.06 1.36 7.76 -51.93 -0.40 0.96 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 289.02 15.07 4.36 4.36 Total: -1.00 -33.18 289.02 -7.88 -41.07 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -4.11 Total: -3.07 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -3.49 Total: -22.50 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.35 Total: -34.03 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.03 Total: -2.80 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.18 -7.88 -41.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259485424.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.767 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds