Wall clock time and date at job start Mon Mar 30 2020 06:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48504 * 109.47207 * 269.99784 * 3 2 1 5 5 H 1.48492 * 109.47150 * 30.00480 * 3 2 1 6 6 H 1.48504 * 109.46951 * 150.00406 * 3 2 1 7 7 C 1.37877 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46996 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47279 * 305.00128 * 10 9 7 12 12 N 1.46902 * 109.46720 * 64.99933 * 10 9 7 13 13 C 1.50695 * 109.46958 * 184.99910 * 10 9 7 14 14 C 1.38297 * 120.00856 * 280.00242 * 13 10 9 15 15 C 1.37965 * 119.95678 * 180.11297 * 14 13 10 16 16 C 1.39151 * 120.21886 * 359.95720 * 15 14 13 17 17 C 1.38376 * 119.69092 * 359.87349 * 16 15 14 18 18 C 1.38105 * 120.00870 * 100.02746 * 13 10 9 19 19 C 1.50765 * 121.40015 * 180.50296 * 17 16 15 20 20 C 1.53062 * 109.70651 * 342.15038 * 19 17 16 21 21 C 1.53407 * 108.30139 * 48.16400 * 20 19 17 22 22 O 1.35847 * 118.50293 * 179.82313 * 16 15 14 23 23 H 0.97003 * 119.99465 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47088 * 59.99721 * 9 7 2 25 25 H 1.08994 * 109.46783 * 300.00228 * 9 7 2 26 26 H 1.00896 * 111.00844 * 296.04354 * 12 10 9 27 27 H 1.00907 * 111.00129 * 59.99944 * 12 10 9 28 28 H 1.07991 * 120.02077 * 0.08625 * 14 13 10 29 29 H 1.08006 * 119.89087 * 179.97438 * 15 14 13 30 30 H 1.07993 * 119.84066 * 0.02562 * 18 13 10 31 31 H 1.08998 * 109.43755 * 102.19844 * 19 17 16 32 32 H 1.09001 * 109.43246 * 222.10688 * 19 17 16 33 33 H 1.09001 * 109.67577 * 288.47175 * 20 19 17 34 34 H 1.09002 * 109.72250 * 167.88001 * 20 19 17 35 35 H 1.09002 * 109.68467 * 175.60390 * 21 20 19 36 36 H 1.08999 * 109.68325 * 55.08524 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9287 -3.5548 -0.8441 12 7 3.0092 -3.6544 1.2529 13 6 1.4957 -4.9636 -0.1256 14 6 0.8945 -5.5240 0.9866 15 6 0.2106 -6.7168 0.8725 16 6 0.1224 -7.3585 -0.3590 17 6 0.7219 -6.7934 -1.4708 18 6 1.4094 -5.5972 -1.3497 19 6 0.6409 -7.4497 -2.8257 20 6 0.2429 -8.9189 -2.6646 21 6 -0.9646 -8.9901 -1.7210 22 8 -0.5564 -8.5330 -0.4309 23 1 -0.4849 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 3.5710 -2.8198 1.3291 27 1 2.3975 -3.7525 2.0494 28 1 0.9608 -5.0286 1.9439 29 1 -0.2581 -7.1538 1.7419 30 1 1.8804 -5.1579 -2.2166 31 1 -0.1048 -6.9369 -3.4332 32 1 1.6123 -7.3894 -3.3165 33 1 1.0750 -9.4801 -2.2395 34 1 -0.0245 -9.3362 -3.6354 35 1 -1.3160 -10.0196 -1.6514 36 1 -1.7645 -8.3540 -2.0997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259498535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:01 Heat of formation + Delta-G solvation = -35.704612 kcal Electronic energy + Delta-G solvation = -17565.456625 eV Core-core repulsion = 14820.509826 eV Total energy + Delta-G solvation = -2744.946799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43151 -37.87101 -35.00447 -34.12687 -32.42419 -30.21802 -29.66392 -27.90601 -25.65020 -24.50521 -23.03898 -22.11092 -20.76752 -18.85974 -17.53528 -16.71941 -16.35143 -15.59256 -15.03349 -14.61394 -14.28823 -14.14437 -13.96380 -13.44940 -13.02251 -12.83259 -12.76954 -12.45857 -12.25335 -11.86870 -11.37932 -11.26266 -11.01969 -10.89926 -10.68636 -10.47742 -10.29780 -10.13144 -9.84735 -9.15373 -8.48098 -8.39623 -7.92593 -7.45074 -6.07684 -4.12362 1.71027 1.83967 3.26931 3.33823 3.36206 3.45398 4.12510 4.39178 4.62979 4.70714 4.80183 5.05661 5.19815 5.26845 5.38575 5.40389 5.49341 5.57711 5.69392 5.76761 5.86383 5.89630 5.99444 6.16533 6.23687 6.47876 6.65903 6.74870 6.79104 7.15114 7.17383 7.48374 7.60455 7.71219 7.86724 8.08360 8.23104 8.35432 8.94644 9.52792 11.02872 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039353 B = 0.004769 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.338917 B = 5870.259297 C = 6023.806211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.000 4.000 10 C 0.128 3.872 11 H 0.074 0.926 12 N -0.840 5.840 13 C -0.074 4.074 14 C -0.076 4.076 15 C -0.148 4.148 16 C 0.110 3.890 17 C -0.160 4.160 18 C -0.085 4.085 19 C -0.076 4.076 20 C -0.158 4.158 21 C 0.062 3.938 22 O -0.321 6.321 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.346 0.654 27 H 0.328 0.672 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.313 -15.699 -3.397 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.038 4.038 10 C 0.017 3.983 11 H 0.092 0.908 12 N -0.369 5.369 13 C -0.074 4.074 14 C -0.094 4.094 15 C -0.166 4.166 16 C 0.066 3.934 17 C -0.161 4.161 18 C -0.104 4.104 19 C -0.113 4.113 20 C -0.196 4.196 21 C -0.014 4.014 22 O -0.236 6.236 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.159 0.841 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.158 -16.361 -3.534 16.739 hybrid contribution -0.233 1.984 -0.099 2.001 sum -0.392 -14.376 -3.632 14.833 Atomic orbital electron populations 1.69976 1.06116 1.26718 1.50159 1.25018 0.94812 0.99290 0.95076 0.86590 0.79834 0.83408 0.78154 1.20649 1.21248 1.19780 1.21172 0.92898 0.90856 1.51477 0.92514 1.19802 0.94456 0.91692 0.97850 1.20482 0.94400 0.90623 0.92809 0.90780 1.59266 1.28003 1.45759 1.03833 1.20027 0.97995 0.96664 0.92763 1.20708 0.95798 0.94072 0.98817 1.20495 1.04034 0.96271 0.95822 1.18556 0.94587 0.86214 0.94078 1.19653 1.03575 0.98102 0.94801 1.20735 0.98546 0.93593 0.97510 1.20427 1.02554 0.94222 0.94089 1.22217 0.99189 0.97572 1.00604 1.22876 0.96015 1.00151 0.82316 1.85950 1.70834 1.35973 1.30839 0.92915 0.96275 0.96430 0.84109 0.86019 0.85716 0.85840 0.86089 0.90702 0.90259 0.90619 0.90150 0.88050 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.24 8.55 -34.44 -0.29 -14.53 16 8 H 0.06 1.48 7.14 -52.49 -0.38 1.10 16 9 C 0.00 0.01 4.60 -27.88 -0.13 -0.12 16 10 C 0.13 2.65 2.99 -68.87 -0.21 2.44 16 11 H 0.07 1.56 8.00 -51.93 -0.42 1.14 16 12 N -0.84 -15.91 9.02 -5.66 -0.05 -15.97 16 13 C -0.07 -1.40 4.95 -104.65 -0.52 -1.91 16 14 C -0.08 -1.33 9.29 -39.66 -0.37 -1.70 16 15 C -0.15 -2.43 9.94 -39.34 -0.39 -2.82 16 16 C 0.11 1.78 6.47 -39.19 -0.25 1.53 16 17 C -0.16 -2.51 5.75 -104.44 -0.60 -3.11 16 18 C -0.09 -1.48 9.29 -39.53 -0.37 -1.84 16 19 C -0.08 -0.90 5.86 -27.82 -0.16 -1.07 16 20 C -0.16 -1.55 6.20 -26.49 -0.16 -1.71 16 21 C 0.06 0.65 7.02 37.37 0.26 0.91 16 22 O -0.32 -4.68 10.27 -19.26 -0.20 -4.87 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.35 6.65 7.90 -39.29 -0.31 6.34 16 27 H 0.33 5.92 7.35 -39.29 -0.29 5.63 16 28 H 0.12 2.07 6.67 -52.49 -0.35 1.72 16 29 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.12 1.94 8.03 -52.49 -0.42 1.52 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 296.40 15.07 4.47 4.47 Total: -1.00 -30.38 296.40 -8.46 -38.84 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.10 Total: 9.37 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -3.29 Total: -22.35 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.69 Total: -41.63 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.20 Total: -4.87 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.38 -8.46 -38.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.136 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds