Wall clock time and date at job start Mon Mar 30 2020 06:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99921 * 2 1 4 4 H 1.48504 * 109.47207 * 269.99784 * 3 2 1 5 5 H 1.48492 * 109.47150 * 30.00480 * 3 2 1 6 6 H 1.48504 * 109.46951 * 150.00406 * 3 2 1 7 7 C 1.37877 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46996 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47279 * 305.00128 * 10 9 7 12 12 N 1.46902 * 109.46720 * 64.99933 * 10 9 7 13 13 C 1.50695 * 109.46958 * 184.99910 * 10 9 7 14 14 C 1.38297 * 120.00856 * 280.00242 * 13 10 9 15 15 C 1.37965 * 119.95678 * 180.11297 * 14 13 10 16 16 C 1.39151 * 120.21886 * 359.95720 * 15 14 13 17 17 C 1.38376 * 119.69092 * 359.87349 * 16 15 14 18 18 C 1.38105 * 120.00870 * 100.02746 * 13 10 9 19 19 C 1.50765 * 121.40015 * 180.50296 * 17 16 15 20 20 C 1.53062 * 109.70651 * 342.15038 * 19 17 16 21 21 C 1.53407 * 108.30139 * 48.16400 * 20 19 17 22 22 O 1.35847 * 118.50293 * 179.82313 * 16 15 14 23 23 H 0.97003 * 119.99465 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47088 * 59.99721 * 9 7 2 25 25 H 1.08994 * 109.46783 * 300.00228 * 9 7 2 26 26 H 1.00896 * 111.00844 * 296.04354 * 12 10 9 27 27 H 1.00907 * 111.00129 * 59.99944 * 12 10 9 28 28 H 1.07991 * 120.02077 * 0.08625 * 14 13 10 29 29 H 1.08006 * 119.89087 * 179.97438 * 15 14 13 30 30 H 1.07993 * 119.84066 * 0.02562 * 18 13 10 31 31 H 1.08998 * 109.43755 * 102.19844 * 19 17 16 32 32 H 1.09001 * 109.43246 * 222.10688 * 19 17 16 33 33 H 1.09001 * 109.67577 * 288.47175 * 20 19 17 34 34 H 1.09002 * 109.72250 * 167.88001 * 20 19 17 35 35 H 1.09002 * 109.68467 * 175.60390 * 21 20 19 36 36 H 1.08999 * 109.68325 * 55.08524 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 1 2.9287 -3.5548 -0.8441 12 7 3.0092 -3.6544 1.2529 13 6 1.4957 -4.9636 -0.1256 14 6 0.8945 -5.5240 0.9866 15 6 0.2106 -6.7168 0.8725 16 6 0.1224 -7.3585 -0.3590 17 6 0.7219 -6.7934 -1.4708 18 6 1.4094 -5.5972 -1.3497 19 6 0.6409 -7.4497 -2.8257 20 6 0.2429 -8.9189 -2.6646 21 6 -0.9646 -8.9901 -1.7210 22 8 -0.5564 -8.5330 -0.4309 23 1 -0.4849 0.8401 -0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 3.5710 -2.8198 1.3291 27 1 2.3975 -3.7525 2.0494 28 1 0.9608 -5.0286 1.9439 29 1 -0.2581 -7.1538 1.7419 30 1 1.8804 -5.1579 -2.2166 31 1 -0.1048 -6.9369 -3.4332 32 1 1.6123 -7.3894 -3.3165 33 1 1.0750 -9.4801 -2.2395 34 1 -0.0245 -9.3362 -3.6354 35 1 -1.3160 -10.0196 -1.6514 36 1 -1.7645 -8.3540 -2.0997 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259498535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:00 Heat of formation + Delta-G solvation = -54.873931 kcal Electronic energy + Delta-G solvation = -17566.287869 eV Core-core repulsion = 14820.509826 eV Total energy + Delta-G solvation = -2745.778043 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58125 -39.20186 -36.59677 -35.16506 -34.42507 -31.37767 -30.98739 -29.86094 -26.80214 -26.06544 -24.44179 -23.44161 -22.24622 -20.09909 -18.81488 -18.59039 -17.53700 -16.94672 -16.61095 -16.29495 -15.41305 -15.35915 -15.19667 -14.73613 -14.42952 -14.24889 -14.15973 -14.00655 -13.90949 -13.19633 -12.98533 -12.90528 -12.49379 -12.31057 -12.05169 -11.92623 -11.69259 -11.58543 -11.31290 -11.13261 -10.61991 -9.69513 -9.47646 -8.87087 -8.21704 -6.34541 0.41929 0.50463 1.40072 1.40320 1.51548 2.37952 2.41832 2.82729 3.11105 3.67942 3.78190 3.86396 3.96429 4.00819 4.22225 4.28402 4.38719 4.50317 4.54611 4.67870 4.70911 4.75994 4.88513 4.94816 5.08966 5.13814 5.20693 5.27793 5.39102 5.49274 5.52246 5.74781 5.82585 5.88065 6.15387 6.40631 6.55789 6.72867 6.82180 7.35634 8.89164 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.039353 B = 0.004769 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.338917 B = 5870.259297 C = 6023.806211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.012 3.988 10 C 0.144 3.856 11 H 0.069 0.931 12 N -0.829 5.829 13 C -0.102 4.102 14 C -0.087 4.087 15 C -0.156 4.156 16 C 0.108 3.892 17 C -0.162 4.162 18 C -0.097 4.097 19 C -0.080 4.080 20 C -0.151 4.151 21 C 0.050 3.950 22 O -0.332 6.332 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.008 1.008 26 H 0.344 0.656 27 H 0.334 0.666 28 H 0.127 0.873 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.133 0.867 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -16.901 -4.172 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.183 1.183 7 C -0.575 4.575 8 H 0.084 0.916 9 C -0.027 4.027 10 C 0.032 3.968 11 H 0.087 0.913 12 N -0.357 5.357 13 C -0.102 4.102 14 C -0.105 4.105 15 C -0.174 4.174 16 C 0.063 3.937 17 C -0.163 4.163 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.188 4.188 21 C -0.025 4.025 22 O -0.247 6.247 23 H 0.071 0.929 24 H 0.003 0.997 25 H 0.010 0.990 26 H 0.157 0.843 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.424 -17.586 -4.307 18.111 hybrid contribution -0.483 2.242 0.111 2.297 sum -0.059 -15.344 -4.196 15.907 Atomic orbital electron populations 1.70121 1.07953 1.27711 1.51474 1.25956 0.95624 1.03321 0.94643 0.85450 0.78787 0.78474 0.78349 1.20085 1.21147 1.18311 1.21574 0.93517 0.91701 1.50688 0.91558 1.19667 0.94591 0.93565 0.94870 1.20177 0.93218 0.90100 0.93322 0.91290 1.59260 1.27591 1.45386 1.03465 1.19961 0.99583 0.96521 0.94155 1.20782 0.96281 0.94802 0.98644 1.20718 1.03800 0.95952 0.96956 1.18723 0.94258 0.86694 0.94025 1.20039 1.02203 0.97390 0.96671 1.20921 0.99066 0.94419 0.97114 1.20565 1.03615 0.95587 0.91889 1.22216 0.98618 0.95904 1.02099 1.23285 0.96474 1.01797 0.80896 1.85942 1.70360 1.34884 1.33464 0.92876 0.99692 0.99007 0.84260 0.85396 0.85509 0.84164 0.85463 0.89897 0.89129 0.90891 0.86829 0.84910 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 43.58 29.54 68.60 2.03 45.61 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.54 -29.49 8.55 25.60 0.22 -29.27 16 8 H 0.07 3.44 7.14 -2.91 -0.02 3.42 16 9 C 0.01 0.62 4.60 29.85 0.14 0.75 16 10 C 0.14 6.08 2.99 44.17 0.13 6.21 16 11 H 0.07 2.96 8.00 -2.39 -0.02 2.94 16 12 N -0.83 -31.60 9.02 -171.81 -1.55 -33.15 16 13 C -0.10 -3.92 4.95 -19.88 -0.10 -4.02 16 14 C -0.09 -3.11 9.29 22.22 0.21 -2.91 16 15 C -0.16 -5.08 9.94 22.42 0.22 -4.86 16 16 C 0.11 3.38 6.47 22.52 0.15 3.53 16 17 C -0.16 -4.92 5.75 -19.75 -0.11 -5.03 16 18 C -0.10 -3.36 9.29 22.30 0.21 -3.15 16 19 C -0.08 -1.72 5.86 29.89 0.18 -1.54 16 20 C -0.15 -2.45 6.20 30.75 0.19 -2.26 16 21 C 0.05 0.90 7.02 72.12 0.51 1.41 16 22 O -0.33 -9.01 10.27 -91.83 -0.94 -9.95 16 23 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 24 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.34 13.21 7.90 -89.70 -0.71 12.50 16 27 H 0.33 12.20 7.35 -89.69 -0.66 11.54 16 28 H 0.13 4.33 6.67 -2.92 -0.02 4.31 16 29 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 30 H 0.13 4.11 8.03 -2.91 -0.02 4.09 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -66.10 296.40 1.93 -64.17 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: -0.28 Total: 30.12 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 2.39 Total: -40.53 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -1.26 Total: -89.42 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.94 Total: -9.95 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -66.10 1.93 -64.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.293 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds