Wall clock time and date at job start Mon Mar 30 2020 06:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00164 * 2 1 4 4 H 1.48502 * 109.46991 * 269.99936 * 3 2 1 5 5 H 1.48500 * 109.47226 * 29.99594 * 3 2 1 6 6 H 1.48498 * 109.47417 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99911 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47459 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47095 * 54.99993 * 10 9 7 12 12 N 1.46900 * 109.47100 * 295.00272 * 10 9 7 13 13 C 1.50694 * 109.47799 * 174.99933 * 10 9 7 14 14 C 1.38297 * 120.00679 * 79.99977 * 13 10 9 15 15 C 1.37965 * 119.95678 * 180.02562 * 14 13 10 16 16 C 1.39151 * 120.21886 * 359.95720 * 15 14 13 17 17 C 1.38376 * 119.69092 * 359.87349 * 16 15 14 18 18 C 1.38105 * 120.01047 * 259.98343 * 13 10 9 19 19 C 1.50765 * 121.40015 * 180.50296 * 17 16 15 20 20 C 1.53062 * 109.70651 * 342.15038 * 19 17 16 21 21 C 1.53407 * 108.30139 * 48.16400 * 20 19 17 22 22 O 1.35847 * 118.50293 * 179.82313 * 16 15 14 23 23 H 0.97001 * 120.00275 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.47338 * 59.99827 * 9 7 2 25 25 H 1.09001 * 109.47267 * 300.00169 * 9 7 2 26 26 H 1.00904 * 111.00120 * 176.03783 * 12 10 9 27 27 H 1.00898 * 110.99982 * 299.99389 * 12 10 9 28 28 H 1.07999 * 120.02111 * 0.09085 * 14 13 10 29 29 H 1.08006 * 119.89087 * 179.97438 * 15 14 13 30 30 H 1.07993 * 119.84066 * 0.05335 * 18 13 10 31 31 H 1.08998 * 109.43755 * 102.19844 * 19 17 16 32 32 H 1.09005 * 109.42992 * 222.06643 * 19 17 16 33 33 H 1.09001 * 109.67577 * 288.47175 * 20 19 17 34 34 H 1.09002 * 109.72250 * 167.88001 * 20 19 17 35 35 H 1.09002 * 109.68467 * 175.60390 * 21 20 19 36 36 H 1.08999 * 109.68325 * 55.08524 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 1 3.5872 -3.1762 -0.8394 12 7 3.6323 -3.2925 1.2578 13 6 5.5234 -2.6385 -0.1210 14 6 6.3089 -2.3965 0.9912 15 6 7.6838 -2.3981 0.8771 16 6 8.2841 -2.6434 -0.3541 17 6 7.4955 -2.8887 -1.4644 18 6 6.1157 -2.8824 -1.3445 19 6 8.1052 -3.1701 -2.8142 20 6 9.5637 -2.7058 -2.8287 21 6 10.2520 -3.2406 -1.5663 22 8 9.6406 -2.6330 -0.4275 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8751 -0.6805 -0.8888 26 1 3.9012 -4.2651 1.2561 27 1 4.0229 -2.8107 2.0536 28 1 5.8464 -2.2075 1.9487 29 1 8.2963 -2.2085 1.7463 30 1 5.5001 -3.0705 -2.2116 31 1 8.0639 -4.2406 -3.0149 32 1 7.5467 -2.6358 -3.5829 33 1 9.6021 -1.6165 -2.8347 34 1 10.0653 -3.0965 -3.7141 35 1 11.3123 -2.9890 -1.5916 36 1 10.1327 -4.3227 -1.5135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259498536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:04 Heat of formation + Delta-G solvation = -26.694765 kcal Electronic energy + Delta-G solvation = -17637.224793 eV Core-core repulsion = 14892.668691 eV Total energy + Delta-G solvation = -2744.556102 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.63815 -38.11845 -35.04546 -34.26872 -32.31439 -30.42561 -29.70499 -28.76857 -25.75540 -24.54683 -22.96435 -22.23931 -20.61700 -19.00836 -17.72050 -16.76972 -16.59059 -15.72256 -15.25054 -14.68078 -14.46270 -14.32426 -14.01554 -13.78944 -13.24322 -13.20376 -12.99763 -12.46058 -12.39242 -11.83296 -11.53125 -11.31273 -11.05937 -11.02882 -10.91837 -10.45756 -10.35291 -9.82697 -9.67369 -9.08269 -8.64559 -8.43231 -8.04153 -7.75356 -5.91286 -3.86077 1.46084 1.59412 3.27064 3.36400 3.44160 3.48084 3.87331 4.48570 4.54565 4.54985 4.65086 4.87797 5.03771 5.18770 5.24962 5.29638 5.34943 5.44157 5.46588 5.55120 5.62319 5.72189 5.84484 5.96476 6.04547 6.26165 6.40774 6.55600 6.59441 6.86559 6.94790 7.13548 7.37656 7.50446 7.82614 7.98467 8.15088 8.70939 9.21345 9.71342 11.22553 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031803 B = 0.005402 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.202637 B = 5182.493871 C = 5383.496434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.063 3.937 3 Si 0.872 3.128 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.000 4.000 10 C 0.145 3.855 11 H 0.081 0.919 12 N -0.819 5.819 13 C -0.130 4.130 14 C -0.089 4.089 15 C -0.146 4.146 16 C 0.114 3.886 17 C -0.160 4.160 18 C -0.081 4.081 19 C -0.077 4.077 20 C -0.160 4.160 21 C 0.062 3.938 22 O -0.320 6.320 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.325 0.675 27 H 0.333 0.667 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.496 -7.322 -3.483 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.137 4.137 3 Si 0.700 3.300 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.532 4.532 8 H 0.098 0.902 9 C -0.038 4.038 10 C 0.033 3.967 11 H 0.099 0.901 12 N -0.346 5.346 13 C -0.133 4.133 14 C -0.107 4.107 15 C -0.164 4.164 16 C 0.070 3.930 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.114 4.114 20 C -0.197 4.197 21 C -0.013 4.013 22 O -0.235 6.235 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.136 0.864 27 H 0.146 0.854 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.698 -6.942 -3.550 21.185 hybrid contribution 1.419 0.813 -0.121 1.640 sum 21.117 -6.128 -3.671 22.292 Atomic orbital electron populations 1.69906 1.06138 1.26449 1.52185 1.24996 0.94668 0.98712 0.95313 0.86908 0.80384 0.84384 0.78322 1.20559 1.21519 1.19262 1.21052 0.88806 0.94564 1.48806 0.90159 1.19619 0.97818 0.90052 0.96275 1.20491 0.84811 0.98611 0.92757 0.90058 1.58806 1.67085 1.04983 1.03694 1.21305 0.99465 0.99339 0.93142 1.20777 0.92299 0.98673 0.98967 1.20509 0.94658 1.05963 0.95320 1.18595 0.81819 0.99208 0.93408 1.19758 0.94243 1.07567 0.94501 1.20848 0.92811 0.98646 0.97647 1.20447 0.95009 1.01634 0.94305 1.22227 0.96453 1.02428 0.98603 1.22896 0.97112 0.97028 0.84284 1.85967 1.17466 1.75608 1.44447 0.93000 0.96666 0.96784 0.86424 0.85388 0.85642 0.85683 0.85751 0.90692 0.89998 0.90481 0.89969 0.87893 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 2 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.87 22.25 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 7 C -0.49 -14.19 9.39 -34.44 -0.32 -14.51 16 8 H 0.08 2.52 7.99 -52.49 -0.42 2.10 16 9 C 0.00 0.00 3.67 -27.89 -0.10 -0.10 16 10 C 0.15 2.84 2.93 -68.87 -0.20 2.64 16 11 H 0.08 1.64 8.00 -51.93 -0.42 1.22 16 12 N -0.82 -14.95 8.77 -5.66 -0.05 -15.00 16 13 C -0.13 -2.20 4.94 -104.65 -0.52 -2.72 16 14 C -0.09 -1.39 9.29 -39.66 -0.37 -1.76 16 15 C -0.15 -2.15 9.94 -39.34 -0.39 -2.55 16 16 C 0.11 1.67 6.47 -39.19 -0.25 1.42 16 17 C -0.16 -2.25 5.75 -104.44 -0.60 -2.85 16 18 C -0.08 -1.25 9.29 -39.53 -0.37 -1.62 16 19 C -0.08 -0.82 5.86 -27.82 -0.16 -0.98 16 20 C -0.16 -1.41 6.20 -26.49 -0.16 -1.58 16 21 C 0.06 0.58 7.02 37.37 0.26 0.84 16 22 O -0.32 -4.26 10.27 -19.26 -0.20 -4.46 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.02 0.37 7.20 -51.92 -0.37 0.00 16 25 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 26 H 0.32 5.02 9.06 -39.29 -0.36 4.66 16 27 H 0.33 5.68 7.35 -39.29 -0.29 5.39 16 28 H 0.13 1.82 6.67 -52.49 -0.35 1.47 16 29 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.12 1.79 8.03 -52.49 -0.42 1.36 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 294.52 15.07 4.44 4.44 Total: -1.00 -32.67 294.52 -8.14 -40.81 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.14 Total: 6.38 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -3.29 Total: -22.00 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.72 Total: -42.75 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.67 -8.14 -40.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.113 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds