Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00164 * 2 1 4 4 H 1.48502 * 109.46991 * 269.99936 * 3 2 1 5 5 H 1.48500 * 109.47226 * 29.99594 * 3 2 1 6 6 H 1.48498 * 109.47417 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99911 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47459 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47095 * 54.99993 * 10 9 7 12 12 N 1.46900 * 109.47100 * 295.00272 * 10 9 7 13 13 C 1.50694 * 109.47799 * 174.99933 * 10 9 7 14 14 C 1.38297 * 120.00679 * 79.99977 * 13 10 9 15 15 C 1.37965 * 119.95678 * 180.02562 * 14 13 10 16 16 C 1.39151 * 120.21886 * 359.95720 * 15 14 13 17 17 C 1.38376 * 119.69092 * 359.87349 * 16 15 14 18 18 C 1.38105 * 120.01047 * 259.98343 * 13 10 9 19 19 C 1.50765 * 121.40015 * 180.50296 * 17 16 15 20 20 C 1.53062 * 109.70651 * 342.15038 * 19 17 16 21 21 C 1.53407 * 108.30139 * 48.16400 * 20 19 17 22 22 O 1.35847 * 118.50293 * 179.82313 * 16 15 14 23 23 H 0.97001 * 120.00275 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.47338 * 59.99827 * 9 7 2 25 25 H 1.09001 * 109.47267 * 300.00169 * 9 7 2 26 26 H 1.00904 * 111.00120 * 176.03783 * 12 10 9 27 27 H 1.00898 * 110.99982 * 299.99389 * 12 10 9 28 28 H 1.07999 * 120.02111 * 0.09085 * 14 13 10 29 29 H 1.08006 * 119.89087 * 179.97438 * 15 14 13 30 30 H 1.07993 * 119.84066 * 0.05335 * 18 13 10 31 31 H 1.08998 * 109.43755 * 102.19844 * 19 17 16 32 32 H 1.09005 * 109.42992 * 222.06643 * 19 17 16 33 33 H 1.09001 * 109.67577 * 288.47175 * 20 19 17 34 34 H 1.09002 * 109.72250 * 167.88001 * 20 19 17 35 35 H 1.09002 * 109.68467 * 175.60390 * 21 20 19 36 36 H 1.08999 * 109.68325 * 55.08524 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 1 3.5872 -3.1762 -0.8394 12 7 3.6323 -3.2925 1.2578 13 6 5.5234 -2.6385 -0.1210 14 6 6.3089 -2.3965 0.9912 15 6 7.6838 -2.3981 0.8771 16 6 8.2841 -2.6434 -0.3541 17 6 7.4955 -2.8887 -1.4644 18 6 6.1157 -2.8824 -1.3445 19 6 8.1052 -3.1701 -2.8142 20 6 9.5637 -2.7058 -2.8287 21 6 10.2520 -3.2406 -1.5663 22 8 9.6406 -2.6330 -0.4275 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8751 -0.6805 -0.8888 26 1 3.9012 -4.2651 1.2561 27 1 4.0229 -2.8107 2.0536 28 1 5.8464 -2.2075 1.9487 29 1 8.2963 -2.2085 1.7463 30 1 5.5001 -3.0705 -2.2116 31 1 8.0639 -4.2406 -3.0149 32 1 7.5467 -2.6358 -3.5829 33 1 9.6021 -1.6165 -2.8347 34 1 10.0653 -3.0965 -3.7141 35 1 11.3123 -2.9890 -1.5916 36 1 10.1327 -4.3227 -1.5135 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259498536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -48.719101 kcal Electronic energy + Delta-G solvation = -17638.179840 eV Core-core repulsion = 14892.668691 eV Total energy + Delta-G solvation = -2745.511149 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.65218 -39.30739 -36.48788 -35.19558 -34.42971 -31.47034 -30.88513 -30.68825 -26.73532 -26.00177 -24.28231 -23.42467 -22.09403 -20.17882 -18.89066 -18.73210 -17.64989 -16.91182 -16.58670 -16.15612 -15.87971 -15.46214 -15.24950 -14.96759 -14.64412 -14.39626 -14.17335 -14.07786 -13.60299 -13.35435 -13.11022 -12.58433 -12.56398 -12.26630 -12.00500 -11.88601 -11.70677 -11.46290 -11.31733 -11.22079 -10.70934 -9.75780 -9.46377 -8.95064 -8.20072 -6.19847 0.33660 0.41617 1.35020 1.36928 1.48163 2.36962 2.39606 2.72816 3.13766 3.66616 3.74084 3.81556 3.92383 3.97098 4.01301 4.22575 4.32762 4.45149 4.50226 4.59437 4.63487 4.72047 4.87211 4.92348 5.01287 5.09051 5.15242 5.17998 5.27781 5.40688 5.46724 5.69268 5.73662 5.82096 6.36787 6.50322 6.52979 6.81202 6.89383 7.41347 8.97210 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.031803 B = 0.005402 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.202637 B = 5182.493871 C = 5383.496434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.039 0.961 9 C 0.005 3.995 10 C 0.156 3.844 11 H 0.068 0.932 12 N -0.833 5.833 13 C -0.147 4.147 14 C -0.094 4.094 15 C -0.153 4.153 16 C 0.112 3.888 17 C -0.162 4.162 18 C -0.090 4.090 19 C -0.080 4.080 20 C -0.154 4.154 21 C 0.052 3.948 22 O -0.333 6.333 23 H 0.262 0.738 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.341 0.659 27 H 0.340 0.660 28 H 0.132 0.868 29 H 0.141 0.859 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.632 -7.088 -4.103 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.194 4.194 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.534 4.534 8 H 0.057 0.943 9 C -0.033 4.033 10 C 0.044 3.956 11 H 0.086 0.914 12 N -0.362 5.362 13 C -0.149 4.149 14 C -0.112 4.112 15 C -0.172 4.172 16 C 0.067 3.933 17 C -0.163 4.163 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.192 4.192 21 C -0.022 4.022 22 O -0.247 6.247 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.032 0.968 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.148 0.852 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.864 -6.732 -4.174 24.197 hybrid contribution 0.489 0.625 0.045 0.794 sum 23.353 -6.107 -4.129 24.489 Atomic orbital electron populations 1.70065 1.08078 1.27602 1.53959 1.25900 0.95495 1.02886 0.95134 0.85789 0.79372 0.79313 0.78896 1.19519 1.21138 1.17710 1.21294 0.91338 0.92982 1.47824 0.94278 1.19513 0.94530 0.93265 0.95967 1.20086 0.86880 0.95723 0.92863 0.91425 1.58716 1.67754 1.06187 1.03558 1.20971 0.97530 1.01969 0.94453 1.20846 0.92778 0.98750 0.98829 1.20724 0.94442 1.05729 0.96285 1.18777 0.82767 0.98320 0.93452 1.20092 0.93621 1.06415 0.96162 1.20993 0.93816 0.98761 0.97304 1.20572 0.96110 1.02777 0.92271 1.22231 0.95345 1.01871 0.99736 1.23279 0.98269 0.97539 0.83156 1.85956 1.16509 1.75874 1.46407 0.92863 0.96689 0.96768 0.84603 0.84622 0.85040 0.84118 0.85285 0.89131 0.89601 0.91471 0.86832 0.85168 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.59 13.96 21.45 0.30 -61.30 16 2 C 0.00 0.08 5.47 84.66 0.46 0.54 16 3 Si 0.94 45.98 27.47 68.60 1.88 47.87 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.25 -11.67 6.54 99.48 0.65 -11.01 16 7 C -0.50 -29.20 9.39 25.60 0.24 -28.96 16 8 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 9 C 0.00 0.24 3.67 29.85 0.11 0.35 16 10 C 0.16 6.17 2.93 44.17 0.13 6.30 16 11 H 0.07 2.80 8.00 -2.38 -0.02 2.78 16 12 N -0.83 -30.61 8.77 -171.81 -1.51 -32.12 16 13 C -0.15 -4.87 4.94 -19.88 -0.10 -4.97 16 14 C -0.09 -2.82 9.29 22.22 0.21 -2.62 16 15 C -0.15 -4.26 9.94 22.42 0.22 -4.04 16 16 C 0.11 3.05 6.47 22.52 0.15 3.19 16 17 C -0.16 -4.25 5.75 -19.75 -0.11 -4.36 16 18 C -0.09 -2.70 9.29 22.30 0.21 -2.50 16 19 C -0.08 -1.48 5.86 29.89 0.18 -1.31 16 20 C -0.15 -2.19 6.20 30.75 0.19 -2.00 16 21 C 0.05 0.78 7.02 72.12 0.51 1.28 16 22 O -0.33 -7.95 10.27 -91.83 -0.94 -8.90 16 23 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 24 H 0.01 0.72 7.20 -2.38 -0.02 0.70 16 25 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 26 H 0.34 10.51 9.06 -89.69 -0.81 9.70 16 27 H 0.34 11.53 7.35 -89.70 -0.66 10.87 16 28 H 0.13 3.68 6.67 -2.91 -0.02 3.66 16 29 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.13 3.63 8.03 -2.91 -0.02 3.60 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -71.24 294.52 1.68 -69.56 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.44 Total: 23.98 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 2.38 Total: -39.09 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -1.21 Total: -93.42 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.94 Total: -8.90 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.87 kcal Total: -71.24 1.68 -69.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.844 kcal (2) G-P(sol) polarization free energy of solvation -71.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds