Wall clock time and date at job start Mon Mar 30 2020 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86806 * 120.00002 * 2 1 4 4 H 1.48500 * 109.46825 * 270.00371 * 3 2 1 5 5 H 1.48494 * 109.47007 * 30.00359 * 3 2 1 6 6 H 1.48501 * 109.47054 * 150.00231 * 3 2 1 7 7 C 1.38656 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99894 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00149 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00421 * 185.05605 * 9 7 2 11 11 C 1.38884 * 120.06376 * 354.46116 * 10 9 7 12 12 C 1.38098 * 119.92820 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06918 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.93165 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.53074 * 359.90031 * 14 13 12 16 16 C 1.53121 * 109.50153 * 239.80592 * 14 13 12 17 17 C 1.53121 * 109.16110 * 182.40405 * 16 14 13 18 18 C 1.53040 * 109.27820 * 57.65025 * 17 16 14 19 19 N 1.46853 * 109.52142 * 300.82317 * 18 17 16 20 20 C 1.46838 * 111.19704 * 61.74485 * 19 18 17 21 21 C 1.38303 * 120.14171 * 0.23294 * 13 12 11 22 22 C 1.38105 * 120.06232 * 359.48793 * 21 13 12 23 23 H 0.97004 * 120.00164 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.03476 * 0.02562 * 11 10 9 25 25 H 1.08004 * 119.96570 * 180.02562 * 12 11 10 26 26 H 1.09001 * 109.52068 * 302.30628 * 16 14 13 27 27 H 1.08999 * 109.52468 * 62.43067 * 16 14 13 28 28 H 1.08995 * 109.50427 * 177.59285 * 17 16 14 29 29 H 1.08997 * 109.49732 * 297.71195 * 17 16 14 30 30 H 1.08994 * 109.45927 * 180.80774 * 18 17 16 31 31 H 1.08998 * 109.46270 * 60.83994 * 18 17 16 32 32 H 1.00900 * 110.99826 * 297.64437 * 19 18 17 33 33 H 1.09000 * 109.46729 * 58.27643 * 20 19 18 34 34 H 1.09001 * 109.46291 * 178.25137 * 20 19 18 35 35 H 1.07992 * 119.96740 * 179.72609 * 21 13 12 36 36 H 1.08001 * 120.02856 * 180.25693 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9735 -2.4056 -0.1072 11 6 3.2234 -3.5744 -0.0952 12 6 3.8533 -4.7984 -0.2049 13 6 5.2295 -4.8611 -0.3261 14 6 5.9138 -6.1986 -0.4451 15 1 5.1684 -6.9932 -0.4149 16 6 6.8965 -6.3751 0.7159 17 6 7.6305 -7.7092 0.5546 18 6 8.3455 -7.7321 -0.7984 19 7 7.3625 -7.5603 -1.8758 20 6 6.6785 -6.2654 -1.7690 21 6 5.9797 -3.6992 -0.3330 22 6 5.3552 -2.4718 -0.2294 23 1 -0.4850 0.8401 0.0004 24 1 2.1486 -3.5260 -0.0010 25 1 3.2706 -5.7077 -0.1961 26 1 7.6188 -5.5588 0.7090 27 1 6.3505 -6.3704 1.6592 28 1 8.3621 -7.8210 1.3547 29 1 6.9121 -8.5276 0.6005 30 1 8.8573 -8.6864 -0.9224 31 1 9.0734 -6.9219 -0.8382 32 1 6.6988 -8.3203 -1.8843 33 1 7.4143 -5.4619 -1.8044 34 1 5.9795 -6.1544 -2.5979 35 1 7.0546 -3.7517 -0.4233 36 1 5.9412 -1.5647 -0.2390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259498730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:13 Heat of formation + Delta-G solvation = -16.632140 kcal Electronic energy + Delta-G solvation = -17451.635619 eV Core-core repulsion = 14707.515865 eV Total energy + Delta-G solvation = -2744.119754 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.69435 -38.57657 -36.48231 -32.61529 -32.04726 -31.36085 -30.30605 -27.81844 -25.31067 -23.64328 -22.87351 -22.24867 -20.81524 -19.76596 -17.82747 -17.28491 -16.06269 -15.16290 -15.04103 -14.71998 -14.53166 -13.88862 -13.85111 -13.79733 -13.35668 -12.79773 -12.65535 -12.32823 -12.23518 -12.17805 -11.63355 -11.34723 -11.23109 -11.18099 -10.86958 -10.77778 -10.51557 -10.20986 -10.13714 -9.39654 -8.89247 -8.45616 -8.28238 -7.28014 -6.42909 -4.09612 2.10336 2.19415 3.21004 3.24776 3.39254 4.22489 4.22793 4.42269 4.67334 4.84539 4.86136 4.95161 5.07700 5.17395 5.31714 5.37271 5.51955 5.54457 5.60093 5.70737 5.79083 5.86689 5.90909 6.00978 6.10489 6.20494 6.23921 6.40736 6.55328 6.76562 6.89248 7.06222 7.22516 7.27570 7.30705 7.59602 7.78553 8.02504 8.92437 9.54988 10.64789 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.055144 B = 0.004427 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.643079 B = 6323.286247 C = 6497.109021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.157 3.843 11 C -0.219 4.219 12 C -0.070 4.070 13 C -0.165 4.165 14 C -0.066 4.066 15 H 0.067 0.933 16 C -0.111 4.111 17 C -0.158 4.158 18 C 0.056 3.944 19 N -0.688 5.688 20 C 0.064 3.936 21 C -0.071 4.071 22 C -0.190 4.190 23 H 0.279 0.721 24 H 0.132 0.868 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.338 0.662 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.166 -12.528 -0.383 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.123 0.877 9 O -0.123 6.123 10 C 0.105 3.895 11 C -0.238 4.238 12 C -0.088 4.088 13 C -0.167 4.167 14 C -0.086 4.086 15 H 0.085 0.915 16 C -0.149 4.149 17 C -0.198 4.198 18 C -0.074 4.074 19 N -0.316 5.316 20 C -0.065 4.065 21 C -0.089 4.089 22 C -0.209 4.209 23 H 0.090 0.910 24 H 0.150 0.850 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.129 0.871 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 13.522 -11.930 -0.837 18.052 hybrid contribution -0.621 0.545 0.894 1.217 sum 12.902 -11.385 0.058 17.207 Atomic orbital electron populations 1.69644 1.05576 1.28498 1.48068 1.24464 0.95020 0.98825 0.95664 0.86181 0.80316 0.81424 0.78979 1.19855 1.20772 1.18388 1.20767 0.76917 0.96623 1.52274 0.87669 1.83571 1.22589 1.25763 1.80400 1.19130 0.91719 0.85511 0.93113 1.21268 1.01091 0.91866 1.09588 1.20679 0.93491 0.96646 0.98005 1.19177 0.93369 0.93591 1.10548 1.20614 0.96751 0.95252 0.95963 0.91467 1.21649 0.98006 0.96703 0.98526 1.22295 1.00094 0.98215 0.99159 1.22018 0.95064 1.01923 0.88385 1.60723 1.19842 1.04773 1.46225 1.22146 0.97012 0.91289 0.96080 1.20420 0.98221 0.91304 0.98998 1.20200 0.91964 0.97840 1.10934 0.91044 0.85008 0.87483 0.91755 0.91929 0.91692 0.92203 0.91128 0.91031 0.84496 0.90808 0.90591 0.87136 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.45 13.96 55.48 0.77 -24.68 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.70 28.62 -169.99 -4.86 16.84 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.39 -11.03 9.95 30.89 0.31 -10.72 16 8 H 0.11 3.03 5.44 -52.49 -0.29 2.75 16 9 O -0.22 -5.77 8.59 0.05 0.00 -5.77 16 10 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 11 C -0.22 -4.70 9.17 -39.39 -0.36 -5.07 16 12 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 13 C -0.17 -2.64 4.79 -104.57 -0.50 -3.14 16 14 C -0.07 -0.82 2.51 -91.69 -0.23 -1.05 16 15 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 16 C -0.11 -1.26 5.13 -26.61 -0.14 -1.40 16 17 C -0.16 -1.45 6.08 -26.65 -0.16 -1.61 16 18 C 0.06 0.51 6.55 -3.83 -0.03 0.48 16 19 N -0.69 -7.10 6.87 -113.82 -0.78 -7.88 16 20 C 0.06 0.75 5.66 -3.84 -0.02 0.73 16 21 C -0.07 -1.18 8.67 -39.61 -0.34 -1.52 16 22 C -0.19 -3.74 9.99 -39.40 -0.39 -4.13 16 23 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.13 2.99 5.64 -52.49 -0.30 2.69 16 25 H 0.11 1.67 7.94 -52.48 -0.42 1.25 16 26 H 0.06 0.75 7.29 -51.93 -0.38 0.37 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.34 3.11 8.86 -39.29 -0.35 2.76 16 33 H 0.07 0.90 7.37 -51.93 -0.38 0.52 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.11 1.54 7.06 -52.49 -0.37 1.17 16 36 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 292.35 15.07 4.41 4.41 Total: -1.00 -28.80 292.35 -8.05 -36.86 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.98 Total: 4.24 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -2.61 Total: -24.01 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: -0.01 Total: -32.56 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: 0.00 Total: -5.77 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.84 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.80 -8.05 -36.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.225 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds