Wall clock time and date at job start Mon Mar 30 2020 06:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86806 * 120.00002 * 2 1 4 4 H 1.48500 * 109.46825 * 270.00371 * 3 2 1 5 5 H 1.48494 * 109.47007 * 30.00359 * 3 2 1 6 6 H 1.48501 * 109.47054 * 150.00231 * 3 2 1 7 7 C 1.38656 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99894 * 359.97438 * 7 2 1 9 9 O 1.34828 * 120.00149 * 180.02562 * 7 2 1 10 10 C 1.35750 * 117.00421 * 185.05605 * 9 7 2 11 11 C 1.38884 * 120.06376 * 354.46116 * 10 9 7 12 12 C 1.38098 * 119.92820 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06918 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.93165 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.53074 * 359.90031 * 14 13 12 16 16 C 1.53121 * 109.50153 * 239.80592 * 14 13 12 17 17 C 1.53121 * 109.16110 * 182.40405 * 16 14 13 18 18 C 1.53040 * 109.27820 * 57.65025 * 17 16 14 19 19 N 1.46853 * 109.52142 * 300.82317 * 18 17 16 20 20 C 1.46838 * 111.19704 * 61.74485 * 19 18 17 21 21 C 1.38303 * 120.14171 * 0.23294 * 13 12 11 22 22 C 1.38105 * 120.06232 * 359.48793 * 21 13 12 23 23 H 0.97004 * 120.00164 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.03476 * 0.02562 * 11 10 9 25 25 H 1.08004 * 119.96570 * 180.02562 * 12 11 10 26 26 H 1.09001 * 109.52068 * 302.30628 * 16 14 13 27 27 H 1.08999 * 109.52468 * 62.43067 * 16 14 13 28 28 H 1.08995 * 109.50427 * 177.59285 * 17 16 14 29 29 H 1.08997 * 109.49732 * 297.71195 * 17 16 14 30 30 H 1.08994 * 109.45927 * 180.80774 * 18 17 16 31 31 H 1.08998 * 109.46270 * 60.83994 * 18 17 16 32 32 H 1.00900 * 110.99826 * 297.64437 * 19 18 17 33 33 H 1.09000 * 109.46729 * 58.27643 * 20 19 18 34 34 H 1.09001 * 109.46291 * 178.25137 * 20 19 18 35 35 H 1.07992 * 119.96740 * 179.72609 * 21 13 12 36 36 H 1.08001 * 120.02856 * 180.25693 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4402 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9735 -2.4056 -0.1072 11 6 3.2234 -3.5744 -0.0952 12 6 3.8533 -4.7984 -0.2049 13 6 5.2295 -4.8611 -0.3261 14 6 5.9138 -6.1986 -0.4451 15 1 5.1684 -6.9932 -0.4149 16 6 6.8965 -6.3751 0.7159 17 6 7.6305 -7.7092 0.5546 18 6 8.3455 -7.7321 -0.7984 19 7 7.3625 -7.5603 -1.8758 20 6 6.6785 -6.2654 -1.7690 21 6 5.9797 -3.6992 -0.3330 22 6 5.3552 -2.4718 -0.2294 23 1 -0.4850 0.8401 0.0004 24 1 2.1486 -3.5260 -0.0010 25 1 3.2706 -5.7077 -0.1961 26 1 7.6188 -5.5588 0.7090 27 1 6.3505 -6.3704 1.6592 28 1 8.3621 -7.8210 1.3547 29 1 6.9121 -8.5276 0.6005 30 1 8.8573 -8.6864 -0.9224 31 1 9.0734 -6.9219 -0.8382 32 1 6.6988 -8.3203 -1.8843 33 1 7.4143 -5.4619 -1.8044 34 1 5.9795 -6.1544 -2.5979 35 1 7.0546 -3.7517 -0.4233 36 1 5.9412 -1.5647 -0.2390 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259498730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:13 Heat of formation + Delta-G solvation = -34.886072 kcal Electronic energy + Delta-G solvation = -17452.427169 eV Core-core repulsion = 14707.515865 eV Total energy + Delta-G solvation = -2744.911304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11890 -39.90404 -37.97063 -34.52855 -33.33218 -32.24553 -31.86362 -29.22329 -27.20912 -24.52749 -24.03915 -23.76847 -22.00570 -20.99561 -19.67411 -19.11022 -17.00172 -16.69266 -16.40409 -15.92149 -15.67225 -15.52878 -15.42458 -15.24190 -14.42041 -14.40222 -14.16072 -13.93590 -13.63923 -13.09691 -13.02876 -12.74458 -12.52603 -12.45684 -12.14576 -12.12476 -11.91540 -11.51454 -11.34271 -11.16773 -10.89648 -9.82576 -9.40186 -8.84724 -8.51334 -6.23991 0.54208 0.63217 1.30387 1.34621 1.50991 2.27061 2.74335 3.03517 3.14761 3.41591 3.76966 3.90121 4.08923 4.13709 4.17749 4.27228 4.38278 4.48952 4.57028 4.60979 4.66453 4.74942 4.94229 5.01343 5.05599 5.10687 5.18403 5.23779 5.29422 5.38754 5.41849 5.57484 5.74789 5.81978 5.89829 6.11020 6.24497 6.53815 6.83033 7.57714 8.60406 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.055144 B = 0.004427 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.643079 B = 6323.286247 C = 6497.109021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.401 4.401 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.115 3.885 11 C -0.235 4.235 12 C -0.074 4.074 13 C -0.138 4.138 14 C -0.062 4.062 15 H 0.075 0.925 16 C -0.111 4.111 17 C -0.151 4.151 18 C 0.056 3.944 19 N -0.691 5.691 20 C 0.070 3.930 21 C -0.063 4.063 22 C -0.189 4.189 23 H 0.285 0.715 24 H 0.106 0.894 25 H 0.132 0.868 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.346 0.654 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.149 0.851 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.324 -14.127 -0.560 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.066 3.934 11 C -0.254 4.254 12 C -0.092 4.092 13 C -0.139 4.139 14 C -0.082 4.082 15 H 0.093 0.907 16 C -0.149 4.149 17 C -0.190 4.190 18 C -0.074 4.074 19 N -0.319 5.319 20 C -0.060 4.060 21 C -0.081 4.081 22 C -0.208 4.208 23 H 0.095 0.905 24 H 0.124 0.876 25 H 0.150 0.850 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.166 0.834 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.709 -13.579 -1.017 21.555 hybrid contribution -1.402 0.687 0.924 1.814 sum 15.308 -12.892 -0.093 20.014 Atomic orbital electron populations 1.69729 1.06926 1.29622 1.50194 1.25286 0.95882 1.02173 0.95482 0.85207 0.78767 0.77348 0.79323 1.19006 1.19123 1.18751 1.20708 0.78178 0.96097 1.52742 0.90300 1.83511 1.21159 1.27462 1.83239 1.19680 0.93260 0.85074 0.95409 1.21272 1.00095 0.93283 1.10760 1.20969 0.94780 0.96042 0.97454 1.19684 0.92622 0.95551 1.06033 1.20684 0.97204 0.92923 0.97405 0.90675 1.21636 0.97696 0.98286 0.97259 1.22232 1.00239 0.96816 0.99693 1.22083 0.94677 1.02843 0.87770 1.60714 1.19991 1.04277 1.46893 1.22024 0.96746 0.92297 0.94936 1.20842 1.00107 0.90078 0.97098 1.20524 0.90525 0.99807 1.09904 0.90550 0.87605 0.85046 0.91650 0.92745 0.90373 0.91713 0.89472 0.91136 0.83631 0.90916 0.91336 0.83362 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.74 13.96 21.61 0.30 -55.44 16 2 C 0.01 0.59 5.49 84.83 0.47 1.05 16 3 Si 0.97 45.85 28.62 68.60 1.96 47.81 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.40 -24.00 9.95 67.92 0.68 -23.33 16 8 H 0.08 4.96 5.44 -2.91 -0.02 4.94 16 9 O -0.25 -13.57 8.59 -22.72 -0.20 -13.77 16 10 C 0.11 5.43 6.65 22.58 0.15 5.58 16 11 C -0.23 -10.47 9.17 22.39 0.21 -10.27 16 12 C -0.07 -2.59 9.66 22.25 0.22 -2.37 16 13 C -0.14 -4.03 4.79 -19.83 -0.10 -4.13 16 14 C -0.06 -1.32 2.51 -11.49 -0.03 -1.35 16 15 H 0.07 1.55 7.88 -2.39 -0.02 1.53 16 16 C -0.11 -2.09 5.13 30.67 0.16 -1.94 16 17 C -0.15 -2.12 6.08 30.65 0.19 -1.94 16 18 C 0.06 0.78 6.55 86.33 0.57 1.34 16 19 N -0.69 -11.63 6.87 -514.02 -3.53 -15.15 16 20 C 0.07 1.39 5.66 86.33 0.49 1.88 16 21 C -0.06 -1.92 8.67 22.25 0.19 -1.73 16 22 C -0.19 -7.22 9.99 22.39 0.22 -6.99 16 23 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 24 H 0.11 5.22 5.64 -2.91 -0.02 5.20 16 25 H 0.13 3.88 7.94 -2.91 -0.02 3.86 16 26 H 0.06 1.23 7.29 -2.39 -0.02 1.22 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.35 5.05 8.86 -89.69 -0.79 4.25 16 33 H 0.07 1.48 7.37 -2.39 -0.02 1.47 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.15 3.45 7.06 -2.91 -0.02 3.43 16 36 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -65.28 292.35 2.23 -63.05 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.29 Total: 17.68 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 3.40 Total: -44.19 kcal Atomic # 7 Polarization: -67.36 SS G_CDS: -3.23 Total: -70.59 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.20 Total: -13.77 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.96 Total: 47.81 kcal Total: -65.28 2.23 -63.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.166 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds