Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86803 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47188 * 240.00284 * 3 2 1 5 5 H 1.48505 * 109.46727 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47256 * 120.00258 * 3 2 1 7 7 C 1.38653 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99972 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00431 * 185.06150 * 9 7 2 11 11 C 1.38882 * 120.06317 * 354.46213 * 10 9 7 12 12 C 1.38100 * 119.92500 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.07302 * 0.02660 * 12 11 10 14 14 C 1.50693 * 119.93031 * 179.97438 * 13 12 11 15 15 H 1.08994 * 109.51029 * 0.07680 * 14 13 12 16 16 C 1.53115 * 109.50613 * 120.19672 * 14 13 12 17 17 C 1.53096 * 109.15824 * 177.59298 * 16 14 13 18 18 C 1.53038 * 109.29028 * 302.33394 * 17 16 14 19 19 N 1.46859 * 109.51036 * 59.18432 * 18 17 16 20 20 C 1.46837 * 111.19969 * 298.26424 * 19 18 17 21 21 C 1.38300 * 120.13685 * 0.24982 * 13 12 11 22 22 C 1.38106 * 120.06783 * 359.45084 * 21 13 12 23 23 H 0.96996 * 119.99819 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.03851 * 0.02562 * 11 10 9 25 25 H 1.08004 * 119.96512 * 180.02562 * 12 11 10 26 26 H 1.09005 * 109.52163 * 297.49912 * 16 14 13 27 27 H 1.09006 * 109.52537 * 57.62481 * 16 14 13 28 28 H 1.09006 * 109.49143 * 182.40016 * 17 16 14 29 29 H 1.08991 * 109.50792 * 62.28862 * 17 16 14 30 30 H 1.09000 * 109.46522 * 299.17895 * 18 17 16 31 31 H 1.09002 * 109.46387 * 179.19188 * 18 17 16 32 32 H 1.00895 * 110.99877 * 174.16225 * 19 18 17 33 33 H 1.09001 * 109.46575 * 181.76038 * 20 19 18 34 34 H 1.09000 * 109.46019 * 301.72673 * 20 19 18 35 35 H 1.07994 * 119.96685 * 179.70563 * 21 13 12 36 36 H 1.07995 * 120.03591 * 180.27077 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2845 2.7464 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4394 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5688 -5.8205 0.3204 14 6 4.3851 -7.0818 0.4371 15 1 5.4458 -6.8328 0.4091 16 6 4.0583 -7.7818 1.7590 17 6 4.8463 -9.0918 1.8422 18 6 4.4969 -9.9693 0.6380 19 7 4.8287 -9.2554 -0.6018 20 6 4.0491 -8.0174 -0.7266 21 6 2.1875 -5.8893 0.3284 22 6 1.4366 -4.7346 0.2273 23 1 -0.4850 0.8400 0.0004 24 1 3.9527 -2.4845 -0.0024 25 1 5.2813 -4.5471 0.1899 26 1 4.3365 -7.1358 2.5918 27 1 2.9901 -7.9948 1.8042 28 1 4.5854 -9.6155 2.7619 29 1 5.9144 -8.8749 1.8367 30 1 3.4311 -10.1971 0.6517 31 1 5.0674 -10.8968 0.6868 32 1 4.6964 -9.8488 -1.4071 33 1 4.2940 -7.5273 -1.6689 34 1 2.9854 -8.2545 -0.7064 35 1 1.6955 -6.8465 0.4179 36 1 0.3581 -4.7884 0.2379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259498731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = -16.362117 kcal Electronic energy + Delta-G solvation = -17404.977240 eV Core-core repulsion = 14660.869195 eV Total energy + Delta-G solvation = -2744.108045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.47280 -38.30900 -36.28014 -32.64205 -32.01688 -31.26752 -30.18238 -27.57347 -25.37332 -23.68306 -22.91865 -22.06527 -20.59603 -19.33439 -17.87513 -17.07371 -16.42747 -15.03614 -14.65332 -14.52475 -14.19461 -13.93989 -13.76846 -13.68845 -13.31767 -13.12861 -12.74693 -12.51238 -12.35491 -11.67828 -11.46868 -11.23488 -11.09076 -10.86700 -10.85615 -10.50473 -10.35448 -10.20863 -10.06915 -9.31620 -8.80658 -8.50866 -8.16167 -7.13946 -6.43858 -4.02813 2.22689 2.33573 3.13793 3.14918 3.17627 3.97732 4.16524 4.53812 4.88283 4.94894 5.01788 5.11562 5.23706 5.32815 5.44061 5.46743 5.60566 5.69738 5.76918 5.78005 5.86738 5.94012 6.04145 6.07520 6.22188 6.34906 6.37765 6.55709 6.72191 6.90385 6.98128 7.09728 7.27623 7.30397 7.42577 7.46217 7.84644 8.01209 9.01813 9.72366 10.74240 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.055423 B = 0.004275 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.086955 B = 6547.764897 C = 6711.889484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.152 3.848 11 C -0.233 4.233 12 C -0.066 4.066 13 C -0.177 4.177 14 C -0.025 4.025 15 H 0.075 0.925 16 C -0.113 4.113 17 C -0.118 4.118 18 C 0.058 3.942 19 N -0.693 5.693 20 C 0.066 3.934 21 C -0.069 4.069 22 C -0.192 4.192 23 H 0.270 0.730 24 H 0.126 0.874 25 H 0.106 0.894 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.339 0.661 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.107 0.893 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.020 -14.587 1.065 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.098 3.902 11 C -0.252 4.252 12 C -0.084 4.084 13 C -0.178 4.178 14 C -0.044 4.044 15 H 0.093 0.907 16 C -0.151 4.151 17 C -0.156 4.156 18 C -0.072 4.072 19 N -0.324 5.324 20 C -0.063 4.063 21 C -0.087 4.087 22 C -0.211 4.211 23 H 0.080 0.920 24 H 0.144 0.856 25 H 0.124 0.876 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.125 0.875 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.118 -14.047 1.314 16.277 hybrid contribution -0.429 0.518 -0.239 0.713 sum 7.690 -13.529 1.075 15.599 Atomic orbital electron populations 1.70028 1.05962 1.27746 1.46160 1.25280 0.95831 0.98808 0.96565 0.85791 0.78703 0.79803 0.79190 1.19497 1.20282 1.19506 1.21280 0.91773 0.80873 1.52951 0.89141 1.83976 1.34324 1.11437 1.78521 1.19391 0.90314 0.88050 0.92397 1.21154 0.93793 0.98885 1.11352 1.20643 0.98265 0.91745 0.97745 1.19185 0.93389 0.93654 1.11579 1.19854 0.99090 0.91904 0.93526 0.90687 1.21665 0.99799 0.95793 0.97825 1.21607 1.01069 0.96209 0.96733 1.21913 0.98183 0.96431 0.90650 1.60280 1.59949 1.07710 1.04445 1.22033 0.94822 0.90142 0.99338 1.20418 0.93038 0.96430 0.98854 1.20196 0.99466 0.90380 1.11072 0.91994 0.85612 0.87560 0.91733 0.92240 0.91925 0.91331 0.95450 0.91272 0.84365 0.90768 0.95080 0.87511 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.07 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 9 O -0.18 -5.16 9.76 0.04 0.00 -5.16 16 10 C 0.15 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.23 -5.10 9.17 -39.39 -0.36 -5.46 16 12 C -0.07 -1.22 9.66 -39.61 -0.38 -1.60 16 13 C -0.18 -3.01 4.79 -104.58 -0.50 -3.51 16 14 C -0.02 -0.35 2.52 -91.69 -0.23 -0.58 16 15 H 0.07 1.06 7.87 -51.93 -0.41 0.66 16 16 C -0.11 -1.42 5.13 -26.62 -0.14 -1.56 16 17 C -0.12 -1.24 6.09 -26.66 -0.16 -1.40 16 18 C 0.06 0.57 6.55 -3.83 -0.03 0.55 16 19 N -0.69 -7.57 6.84 -113.81 -0.78 -8.35 16 20 C 0.07 0.83 5.66 -3.84 -0.02 0.81 16 21 C -0.07 -1.24 8.67 -39.61 -0.34 -1.58 16 22 C -0.19 -4.09 9.99 -39.39 -0.39 -4.49 16 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 25 H 0.11 1.71 7.94 -52.48 -0.42 1.29 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 3.06 8.90 -39.29 -0.35 2.71 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.40 7.34 -51.93 -0.38 0.02 16 35 H 0.11 1.64 7.06 -52.49 -0.37 1.27 16 36 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 293.51 15.07 4.42 4.42 Total: -1.00 -30.13 293.51 -8.21 -38.34 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.97 Total: 5.05 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -2.62 Total: -25.15 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: -0.02 Total: -33.09 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.13 -8.21 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.981 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds