Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86803 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47188 * 240.00284 * 3 2 1 5 5 H 1.48505 * 109.46727 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47256 * 120.00258 * 3 2 1 7 7 C 1.38653 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 180.02562 * 7 2 1 9 9 O 1.34834 * 119.99972 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00431 * 185.06150 * 9 7 2 11 11 C 1.38882 * 120.06317 * 354.46213 * 10 9 7 12 12 C 1.38100 * 119.92500 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.07302 * 0.02660 * 12 11 10 14 14 C 1.50693 * 119.93031 * 179.97438 * 13 12 11 15 15 H 1.08994 * 109.51029 * 0.07680 * 14 13 12 16 16 C 1.53115 * 109.50613 * 120.19672 * 14 13 12 17 17 C 1.53096 * 109.15824 * 177.59298 * 16 14 13 18 18 C 1.53038 * 109.29028 * 302.33394 * 17 16 14 19 19 N 1.46859 * 109.51036 * 59.18432 * 18 17 16 20 20 C 1.46837 * 111.19969 * 298.26424 * 19 18 17 21 21 C 1.38300 * 120.13685 * 0.24982 * 13 12 11 22 22 C 1.38106 * 120.06783 * 359.45084 * 21 13 12 23 23 H 0.96996 * 119.99819 * 359.97438 * 1 2 3 24 24 H 1.07996 * 120.03851 * 0.02562 * 11 10 9 25 25 H 1.08004 * 119.96512 * 180.02562 * 12 11 10 26 26 H 1.09005 * 109.52163 * 297.49912 * 16 14 13 27 27 H 1.09006 * 109.52537 * 57.62481 * 16 14 13 28 28 H 1.09006 * 109.49143 * 182.40016 * 17 16 14 29 29 H 1.08991 * 109.50792 * 62.28862 * 17 16 14 30 30 H 1.09000 * 109.46522 * 299.17895 * 18 17 16 31 31 H 1.09002 * 109.46387 * 179.19188 * 18 17 16 32 32 H 1.00895 * 110.99877 * 174.16225 * 19 18 17 33 33 H 1.09001 * 109.46575 * 181.76038 * 20 19 18 34 34 H 1.09000 * 109.46019 * 301.72673 * 20 19 18 35 35 H 1.07994 * 119.96685 * 179.70563 * 21 13 12 36 36 H 1.07995 * 120.03591 * 180.27077 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2126 5 1 1.2845 2.7464 0.0006 6 1 3.1034 1.6964 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4394 0.0922 12 6 4.2024 -4.5971 0.1998 13 6 3.5688 -5.8205 0.3204 14 6 4.3851 -7.0818 0.4371 15 1 5.4458 -6.8328 0.4091 16 6 4.0583 -7.7818 1.7590 17 6 4.8463 -9.0918 1.8422 18 6 4.4969 -9.9693 0.6380 19 7 4.8287 -9.2554 -0.6018 20 6 4.0491 -8.0174 -0.7266 21 6 2.1875 -5.8893 0.3284 22 6 1.4366 -4.7346 0.2273 23 1 -0.4850 0.8400 0.0004 24 1 3.9527 -2.4845 -0.0024 25 1 5.2813 -4.5471 0.1899 26 1 4.3365 -7.1358 2.5918 27 1 2.9901 -7.9948 1.8042 28 1 4.5854 -9.6155 2.7619 29 1 5.9144 -8.8749 1.8367 30 1 3.4311 -10.1971 0.6517 31 1 5.0674 -10.8968 0.6868 32 1 4.6964 -9.8488 -1.4071 33 1 4.2940 -7.5273 -1.6689 34 1 2.9854 -8.2545 -0.7064 35 1 1.6955 -6.8465 0.4179 36 1 0.3581 -4.7884 0.2379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259498731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = -35.968007 kcal Electronic energy + Delta-G solvation = -17405.827416 eV Core-core repulsion = 14660.869195 eV Total energy + Delta-G solvation = -2744.958220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 247.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99260 -39.69373 -37.83143 -34.40988 -33.38010 -32.31053 -31.82306 -29.03535 -27.33038 -24.64284 -24.14787 -23.66147 -21.99364 -20.55807 -19.63031 -18.81763 -17.56948 -16.48213 -16.36993 -15.81792 -15.53454 -15.49291 -15.31235 -14.72919 -14.58664 -14.43580 -14.27980 -13.95043 -13.56689 -13.43186 -12.97224 -12.64489 -12.49107 -12.39680 -12.15518 -11.98767 -11.62217 -11.28247 -11.24032 -11.11119 -10.75832 -9.79242 -9.35371 -8.88365 -8.47179 -6.15525 0.58273 0.69496 1.34765 1.45579 1.51132 2.17984 2.80982 3.14670 3.30977 3.52485 3.90900 3.95587 4.04076 4.16020 4.23998 4.28664 4.44146 4.51113 4.58459 4.70886 4.71572 4.81744 4.89564 5.00363 5.04604 5.09742 5.16164 5.22066 5.28884 5.37683 5.48254 5.59152 5.71521 5.85733 6.02668 6.10069 6.23273 6.55184 6.97433 7.78473 8.75974 Molecular weight = 247.13amu Principal moments of inertia in cm(-1) A = 0.055423 B = 0.004275 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.086955 B = 6547.764897 C = 6711.889484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.110 3.890 11 C -0.240 4.240 12 C -0.067 4.067 13 C -0.149 4.149 14 C -0.023 4.023 15 H 0.079 0.921 16 C -0.114 4.114 17 C -0.115 4.115 18 C 0.056 3.944 19 N -0.696 5.696 20 C 0.069 3.931 21 C -0.060 4.060 22 C -0.202 4.202 23 H 0.273 0.727 24 H 0.119 0.881 25 H 0.138 0.862 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.352 0.648 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.140 0.860 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.372 -16.805 1.370 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.059 3.941 11 C -0.259 4.259 12 C -0.085 4.085 13 C -0.150 4.150 14 C -0.042 4.042 15 H 0.097 0.903 16 C -0.151 4.151 17 C -0.152 4.152 18 C -0.074 4.074 19 N -0.328 5.328 20 C -0.060 4.060 21 C -0.078 4.078 22 C -0.222 4.222 23 H 0.082 0.918 24 H 0.136 0.864 25 H 0.156 0.844 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.170 0.830 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.158 0.842 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.505 -16.334 1.616 19.488 hybrid contribution -1.036 0.829 -0.307 1.362 sum 9.469 -15.505 1.309 18.215 Atomic orbital electron populations 1.70178 1.08039 1.28866 1.48892 1.26591 0.96847 1.02728 0.95818 0.84656 0.77407 0.74259 0.79942 1.18115 1.19563 1.18189 1.21793 0.92524 0.81508 1.53363 0.88164 1.83939 1.35925 1.12572 1.81583 1.19935 0.91632 0.87971 0.94517 1.21254 0.93066 1.00013 1.11588 1.21002 0.99782 0.91006 0.96708 1.19678 0.93437 0.94775 1.07137 1.19898 0.98520 0.90572 0.95221 0.90299 1.21657 1.00189 0.96822 0.96456 1.21589 1.00533 0.95169 0.97937 1.21994 0.98734 0.96874 0.89751 1.60238 1.59478 1.07516 1.05565 1.21894 0.95063 0.90822 0.98245 1.20749 0.93439 0.96476 0.97176 1.20447 0.99864 0.90612 1.11227 0.91829 0.86372 0.84417 0.92292 0.92303 0.90219 0.91472 0.95185 0.89366 0.82954 0.91264 0.95107 0.84225 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.20 13.67 21.61 0.30 -56.90 16 2 C -0.02 -1.29 5.49 84.83 0.47 -0.83 16 3 Si 1.02 43.24 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 6 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.42 -24.61 9.49 67.92 0.64 -23.96 16 8 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 9 O -0.23 -14.31 9.76 -22.76 -0.22 -14.53 16 10 C 0.11 5.57 6.65 22.58 0.15 5.72 16 11 C -0.24 -10.66 9.17 22.39 0.21 -10.46 16 12 C -0.07 -2.37 9.66 22.25 0.22 -2.15 16 13 C -0.15 -4.71 4.79 -19.84 -0.10 -4.81 16 14 C -0.02 -0.57 2.52 -11.49 -0.03 -0.60 16 15 H 0.08 1.93 7.87 -2.39 -0.02 1.91 16 16 C -0.11 -2.45 5.13 30.66 0.16 -2.29 16 17 C -0.11 -1.94 6.09 30.64 0.19 -1.75 16 18 C 0.06 0.87 6.55 86.32 0.57 1.44 16 19 N -0.70 -12.55 6.84 -513.98 -3.52 -16.07 16 20 C 0.07 1.51 5.66 86.33 0.49 2.00 16 21 C -0.06 -2.06 8.67 22.25 0.19 -1.86 16 22 C -0.20 -8.77 9.99 22.39 0.22 -8.55 16 23 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 24 H 0.12 5.33 5.64 -2.91 -0.02 5.32 16 25 H 0.14 4.00 7.94 -2.91 -0.02 3.97 16 26 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.06 1.29 7.32 -2.38 -0.02 1.27 16 28 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.35 5.06 8.90 -89.70 -0.80 4.26 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.03 0.68 7.34 -2.39 -0.02 0.66 16 35 H 0.14 3.85 7.06 -2.91 -0.02 3.83 16 36 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -69.17 293.51 2.24 -66.93 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 0.28 Total: 23.42 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 3.37 Total: -48.11 kcal Atomic # 7 Polarization: -69.75 SS G_CDS: -3.22 Total: -72.97 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.22 Total: -14.53 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.17 2.24 -66.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259498731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.967 kcal (2) G-P(sol) polarization free energy of solvation -69.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds