Wall clock time and date at job start Mon Mar 30 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.34234 * 125.03412 * 84.69875 * 12 2 1 14 14 C 1.46496 * 107.01369 * 179.85824 * 13 12 2 15 15 C 1.39663 * 133.97536 * 180.02562 * 14 13 12 16 16 C 1.37798 * 119.62925 * 180.33278 * 15 14 13 17 17 F 1.35096 * 119.83522 * 180.02562 * 16 15 14 18 18 C 1.39029 * 120.33021 * 0.04547 * 16 15 14 19 19 C 1.37720 * 120.65306 * 359.97438 * 18 16 15 20 20 C 1.39091 * 119.94870 * 359.97438 * 19 18 16 21 21 N 1.36811 * 125.03259 * 264.99712 * 12 2 1 22 22 C 1.46503 * 125.06993 * 0.04165 * 21 12 2 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.08006 * 126.49684 * 359.97438 * 13 12 2 28 28 H 1.08003 * 120.18935 * 0.37877 * 15 14 13 29 29 H 1.08003 * 119.67430 * 179.97438 * 18 16 15 30 30 H 1.07995 * 120.02602 * 179.97438 * 19 18 16 31 31 H 1.08999 * 109.47068 * 90.00142 * 22 21 12 32 32 H 1.08999 * 109.46621 * 210.00031 * 22 21 12 33 33 H 1.08994 * 109.46829 * 329.99591 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 6 2.1933 -2.0383 1.3420 14 6 2.7003 -2.2969 2.6919 15 6 3.0560 -3.4536 3.3891 16 6 3.5047 -3.3550 4.6883 17 9 3.8504 -4.4711 5.3664 18 6 3.6030 -2.1128 5.3048 19 6 3.2552 -0.9642 4.6292 20 6 2.8010 -1.0410 3.3168 21 7 2.3861 -0.0978 2.4016 22 6 2.3324 1.3457 2.6461 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7173 1.1669 -3.4844 27 1 1.9897 -2.7763 0.5801 28 1 2.9806 -4.4198 2.9125 29 1 3.9556 -2.0479 6.3236 30 1 3.3352 -0.0045 5.1180 31 1 1.3540 1.6101 3.0474 32 1 3.1058 1.6217 3.3629 33 1 2.4975 1.8791 1.7101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259509629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:04 Heat of formation + Delta-G solvation = 4.060748 kcal Electronic energy + Delta-G solvation = -17354.361320 eV Core-core repulsion = 14487.678571 eV Total energy + Delta-G solvation = -2866.682748 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.48922 -40.86263 -36.68466 -34.19327 -32.40996 -30.85678 -29.75281 -27.56396 -25.72363 -25.15108 -22.91200 -21.27138 -20.96597 -18.90176 -17.04012 -16.72960 -16.03359 -15.60632 -15.29861 -14.86598 -14.72799 -14.20391 -13.90822 -13.10200 -12.77199 -12.50010 -12.45642 -12.40810 -12.11781 -11.74603 -11.63458 -11.11133 -10.96984 -10.66417 -10.56453 -10.27148 -10.18955 -9.82657 -9.27722 -9.06948 -8.49239 -7.53430 -7.06677 -6.13674 -4.19819 1.37981 1.76590 3.27334 3.27696 3.31854 3.36154 3.41393 4.11331 4.35576 4.62765 4.90724 5.10723 5.19133 5.20706 5.44696 5.52190 5.55585 5.75898 5.90061 6.07095 6.14231 6.33731 6.47754 6.62081 6.63973 6.76120 6.88176 6.99842 7.19586 7.25507 7.52804 7.67563 7.75630 7.88974 7.99054 8.27240 8.82179 9.45736 10.93102 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.030909 B = 0.005989 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.675887 B = 4674.295975 C = 5297.850946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.095 3.905 3 H 0.037 0.963 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.145 3.855 13 C -0.218 4.218 14 C -0.076 4.076 15 C -0.112 4.112 16 C 0.056 3.944 17 F -0.151 7.151 18 C -0.150 4.150 19 C -0.099 4.099 20 C 0.076 3.924 21 N -0.487 5.487 22 C 0.079 3.921 23 H 0.007 0.993 24 H 0.090 0.910 25 H 0.034 0.966 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -1.060 11.169 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.076 3.924 3 H 0.055 0.945 4 C -0.548 4.548 5 H 0.083 0.917 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.038 3.962 13 C -0.241 4.241 14 C -0.081 4.081 15 C -0.131 4.131 16 C 0.036 3.964 17 F -0.130 7.130 18 C -0.170 4.170 19 C -0.119 4.119 20 C -0.030 4.030 21 N -0.170 5.170 22 C -0.063 4.063 23 H 0.026 0.974 24 H 0.109 0.891 25 H 0.053 0.947 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.376 -0.621 11.075 11.344 hybrid contribution 0.406 -0.531 -0.658 0.938 sum 2.781 -1.152 10.417 10.843 Atomic orbital electron populations 1.21764 0.96655 0.99976 1.00371 1.17654 0.93074 0.95252 0.86436 0.94510 1.21055 1.31679 1.12780 0.89332 0.91675 1.24934 0.94883 0.94952 0.99080 1.69855 1.36511 1.22760 1.23844 0.86551 0.79275 0.79805 0.81823 1.20036 1.21255 1.20178 1.21626 0.94982 0.92716 0.86827 1.21393 1.12671 0.95135 0.94883 1.19123 1.02396 0.91150 0.95439 1.20342 1.01665 0.98496 0.92601 1.17227 1.05663 0.82258 0.91257 1.91425 1.90581 1.51059 1.79975 1.20515 1.05486 0.90580 1.00435 1.19703 1.02591 0.98121 0.91518 1.18278 1.03609 0.89105 0.92006 1.44032 1.56156 1.05765 1.11087 1.21871 1.02107 0.78857 1.03443 0.97389 0.89132 0.94678 0.92711 0.83413 0.85277 0.85339 0.86060 0.91714 0.90933 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.95 37.16 0.33 -2.63 16 2 C 0.09 2.24 2.44 -92.92 -0.23 2.01 16 3 H 0.04 0.91 6.78 -51.93 -0.35 0.56 16 4 C -0.51 -13.22 8.20 -34.44 -0.28 -13.50 16 5 H 0.07 1.69 6.77 -52.49 -0.36 1.33 16 6 C 0.06 1.65 5.31 -17.82 -0.09 1.56 16 7 N -0.89 -23.98 11.33 55.43 0.63 -23.36 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.14 3.08 5.77 -81.78 -0.47 2.61 16 13 C -0.22 -4.55 9.89 -37.67 -0.37 -4.92 16 14 C -0.08 -1.44 6.37 -105.13 -0.67 -2.11 16 15 C -0.11 -1.89 10.07 -39.21 -0.40 -2.29 16 16 C 0.06 0.89 7.29 -39.45 -0.29 0.61 16 17 F -0.15 -2.35 17.26 2.25 0.04 -2.32 16 18 C -0.15 -2.15 9.99 -39.48 -0.39 -2.54 16 19 C -0.10 -1.45 9.95 -39.45 -0.39 -1.85 16 20 C 0.08 1.36 6.81 -83.95 -0.57 0.79 16 21 N -0.49 -8.98 3.18 -117.18 -0.37 -9.35 16 22 C 0.08 1.13 10.80 59.85 0.65 1.78 16 23 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 24 H 0.09 2.25 6.08 -51.93 -0.32 1.94 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 27 H 0.15 3.06 7.58 -52.48 -0.40 2.66 16 28 H 0.13 1.97 8.06 -52.48 -0.42 1.54 16 29 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.09 1.33 6.81 -51.93 -0.35 0.98 16 LS Contribution 283.50 15.07 4.27 4.27 Total: -1.00 -27.63 283.50 -7.50 -35.13 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.87 Total: 0.61 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.18 Total: -20.47 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.26 Total: -32.71 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.63 -7.50 -35.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259509629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.193 kcal (2) G-P(sol) polarization free energy of solvation -27.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds