Wall clock time and date at job start Mon Mar 30 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.34234 * 125.03412 * 84.69875 * 12 2 1 14 14 C 1.46496 * 107.01369 * 179.85824 * 13 12 2 15 15 C 1.39663 * 133.97536 * 180.02562 * 14 13 12 16 16 C 1.37798 * 119.62925 * 180.33278 * 15 14 13 17 17 F 1.35096 * 119.83522 * 180.02562 * 16 15 14 18 18 C 1.39029 * 120.33021 * 0.04547 * 16 15 14 19 19 C 1.37720 * 120.65306 * 359.97438 * 18 16 15 20 20 C 1.39091 * 119.94870 * 359.97438 * 19 18 16 21 21 N 1.36811 * 125.03259 * 264.99712 * 12 2 1 22 22 C 1.46503 * 125.06993 * 0.04165 * 21 12 2 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 27 27 H 1.08006 * 126.49684 * 359.97438 * 13 12 2 28 28 H 1.08003 * 120.18935 * 0.37877 * 15 14 13 29 29 H 1.08003 * 119.67430 * 179.97438 * 18 16 15 30 30 H 1.07995 * 120.02602 * 179.97438 * 19 18 16 31 31 H 1.08999 * 109.47068 * 90.00142 * 22 21 12 32 32 H 1.08999 * 109.46621 * 210.00031 * 22 21 12 33 33 H 1.08994 * 109.46829 * 329.99591 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 6 2.0323 -0.7104 1.2306 13 6 2.1933 -2.0383 1.3420 14 6 2.7003 -2.2969 2.6919 15 6 3.0560 -3.4536 3.3891 16 6 3.5047 -3.3550 4.6883 17 9 3.8504 -4.4711 5.3664 18 6 3.6030 -2.1128 5.3048 19 6 3.2552 -0.9642 4.6292 20 6 2.8010 -1.0410 3.3168 21 7 2.3861 -0.0978 2.4016 22 6 2.3324 1.3457 2.6461 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7173 1.1669 -3.4844 27 1 1.9897 -2.7763 0.5801 28 1 2.9806 -4.4198 2.9125 29 1 3.9556 -2.0479 6.3236 30 1 3.3352 -0.0045 5.1180 31 1 1.3540 1.6101 3.0474 32 1 3.1058 1.6217 3.3629 33 1 2.4975 1.8791 1.7101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259509629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:04 Heat of formation + Delta-G solvation = -8.691231 kcal Electronic energy + Delta-G solvation = -17354.914287 eV Core-core repulsion = 14487.678571 eV Total energy + Delta-G solvation = -2867.235716 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.72167 -42.24447 -38.03865 -35.98753 -33.79398 -32.67498 -30.98880 -29.00975 -27.32058 -26.80898 -24.46015 -22.58970 -22.45049 -20.45008 -18.44727 -18.08160 -17.80999 -17.06115 -16.55594 -16.47233 -16.08051 -15.70859 -15.17354 -14.74905 -14.10895 -13.95733 -13.83615 -13.68727 -13.59164 -13.38470 -13.03277 -12.89770 -12.80480 -12.44220 -12.19391 -11.82194 -11.67799 -11.58207 -10.98933 -10.59680 -10.48450 -8.89678 -8.48167 -8.13757 -6.25608 0.10100 0.49423 1.44283 1.44790 1.52257 1.88512 1.97505 2.44893 2.80421 3.16495 3.37468 3.70368 3.96359 4.02546 4.10220 4.35726 4.44731 4.54753 4.62373 4.71208 4.78340 4.89963 5.02096 5.07705 5.12395 5.19117 5.26772 5.37626 5.50745 5.69489 5.86718 5.93796 6.04197 6.17890 6.44909 6.52560 6.80479 7.42429 8.91776 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.030909 B = 0.005989 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.675887 B = 4674.295975 C = 5297.850946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.099 3.901 3 H 0.020 0.980 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.123 3.877 13 C -0.234 4.234 14 C -0.104 4.104 15 C -0.123 4.123 16 C 0.054 3.946 17 F -0.149 7.149 18 C -0.135 4.135 19 C -0.090 4.090 20 C 0.068 3.932 21 N -0.489 5.489 22 C 0.072 3.928 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.264 0.736 27 H 0.133 0.867 28 H 0.135 0.865 29 H 0.167 0.833 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 -0.872 13.360 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H 0.038 0.962 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.200 1.200 12 C 0.015 3.985 13 C -0.258 4.258 14 C -0.109 4.109 15 C -0.142 4.142 16 C 0.034 3.966 17 F -0.128 7.128 18 C -0.155 4.155 19 C -0.110 4.110 20 C -0.039 4.039 21 N -0.171 5.171 22 C -0.068 4.068 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.184 0.816 30 H 0.178 0.822 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.298 -0.423 13.282 13.692 hybrid contribution 0.157 -0.637 -1.211 1.377 sum 3.455 -1.060 12.070 12.600 Atomic orbital electron populations 1.21587 0.96496 0.99368 1.00147 1.17430 0.93232 0.94249 0.87122 0.96167 1.21330 1.31615 1.12704 0.90741 0.92532 1.25608 0.95132 0.95619 1.01525 1.69959 1.37281 1.23710 1.24317 0.85675 0.78686 0.78857 0.78854 1.19757 1.20709 1.19991 1.21169 0.96945 0.92885 0.87482 1.21395 1.13329 0.95053 0.95995 1.19183 1.04081 0.92761 0.94887 1.20459 1.02048 0.98337 0.93392 1.17396 1.05235 0.83126 0.90877 1.91436 1.90477 1.51152 1.79732 1.20958 1.03359 0.89376 1.01800 1.20120 1.00880 1.00079 0.89957 1.18654 1.03778 0.88319 0.93109 1.44122 1.55619 1.07236 1.10171 1.22140 1.04311 0.76544 1.03827 0.95405 0.91361 0.95346 0.92705 0.84878 0.84731 0.81600 0.82203 0.90167 0.87460 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.95 71.98 0.64 -4.88 16 2 C 0.10 4.80 2.44 -12.28 -0.03 4.77 16 3 H 0.02 1.04 6.78 -2.39 -0.02 1.02 16 4 C -0.53 -28.09 8.20 25.60 0.21 -27.88 16 5 H 0.06 3.04 6.77 -2.91 -0.02 3.02 16 6 C 0.02 1.09 5.31 84.65 0.45 1.54 16 7 N -0.91 -50.15 11.33 21.45 0.24 -49.91 16 8 Si 0.95 42.62 29.54 68.60 2.03 44.64 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.12 5.33 5.77 40.87 0.24 5.56 16 13 C -0.23 -10.08 9.89 23.51 0.23 -9.85 16 14 C -0.10 -3.92 6.37 -20.20 -0.13 -4.05 16 15 C -0.12 -4.06 10.07 22.51 0.23 -3.83 16 16 C 0.05 1.57 7.29 22.36 0.16 1.73 16 17 F -0.15 -4.23 17.26 44.97 0.78 -3.46 16 18 C -0.14 -3.26 9.99 22.34 0.22 -3.04 16 19 C -0.09 -2.27 9.95 22.35 0.22 -2.05 16 20 C 0.07 2.28 6.81 38.99 0.27 2.55 16 21 N -0.49 -17.51 3.18 -524.65 -1.67 -19.18 16 22 C 0.07 1.93 10.80 127.77 1.38 3.31 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 3.49 6.08 -2.38 -0.01 3.48 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.13 5.88 7.58 -2.91 -0.02 5.86 16 28 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.11 2.08 8.10 -2.39 -0.02 2.06 16 33 H 0.08 2.24 6.81 -2.39 -0.02 2.22 16 Total: -1.00 -60.20 283.50 6.58 -53.62 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.11 Total: 10.40 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 4.09 Total: -36.11 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -1.43 Total: -69.09 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -60.20 6.58 -53.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259509629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.925 kcal (2) G-P(sol) polarization free energy of solvation -60.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds