Wall clock time and date at job start Mon Mar 30 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47136 * 2 1 4 4 C 1.50697 * 109.47005 * 120.00300 * 2 1 3 5 5 H 1.07998 * 119.99721 * 114.37853 * 4 2 1 6 6 C 1.37875 * 120.00157 * 294.37594 * 4 2 1 7 7 N 1.31516 * 119.99869 * 157.25458 * 6 4 2 8 8 Si 1.86799 * 120.00196 * 337.25759 * 6 4 2 9 9 H 1.48497 * 109.47444 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46943 * 59.99670 * 8 6 4 11 11 H 1.48508 * 109.47095 * 300.00013 * 8 6 4 12 12 C 1.50703 * 109.46972 * 240.00420 * 2 1 3 13 13 C 1.34245 * 125.03303 * 275.02511 * 12 2 1 14 14 C 1.46483 * 107.00947 * 179.97438 * 13 12 2 15 15 C 1.39667 * 133.97368 * 180.02562 * 14 13 12 16 16 C 1.37795 * 119.62870 * 179.97438 * 15 14 13 17 17 F 1.35105 * 119.83064 * 179.97438 * 16 15 14 18 18 C 1.39031 * 120.33415 * 359.97438 * 16 15 14 19 19 C 1.37710 * 120.64707 * 0.04081 * 18 16 15 20 20 C 1.39093 * 119.95379 * 359.95820 * 19 18 16 21 21 N 1.36804 * 125.03543 * 94.71782 * 12 2 1 22 22 C 1.46500 * 125.06741 * 0.04118 * 21 12 2 23 23 H 1.09003 * 109.46825 * 53.20154 * 1 2 3 24 24 H 1.08999 * 109.47188 * 173.20256 * 1 2 3 25 25 H 1.09004 * 109.46702 * 293.20710 * 1 2 3 26 26 H 0.96994 * 120.00381 * 354.93370 * 7 6 4 27 27 H 1.08001 * 126.49017 * 359.96489 * 13 12 2 28 28 H 1.08004 * 120.18597 * 359.97438 * 15 14 13 29 29 H 1.08000 * 119.67480 * 180.02562 * 18 16 15 30 30 H 1.08005 * 120.01921 * 180.02562 * 19 18 16 31 31 H 1.09002 * 109.47619 * 90.00085 * 22 21 12 32 32 H 1.09006 * 109.47048 * 209.99628 * 22 21 12 33 33 H 1.09004 * 109.47131 * 329.99659 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5763 -1.6384 1.1338 6 6 1.7975 -0.1758 2.4794 7 7 1.8149 -0.9521 3.5409 8 14 1.4545 1.6512 2.6639 9 1 1.2361 1.9716 4.0973 10 1 0.2403 2.0078 1.8868 11 1 2.6140 2.4265 2.1540 12 6 2.0323 -0.7103 -1.2305 13 6 2.1984 -2.0380 -1.3402 14 6 2.6995 -2.2969 -2.6920 15 6 3.0557 -3.4536 -3.3892 16 6 3.5036 -3.3550 -4.6886 17 9 3.8497 -4.4712 -5.3666 18 6 3.6011 -2.1128 -5.3054 19 6 3.2536 -0.9644 -4.6297 20 6 2.7991 -1.0413 -3.3173 21 7 2.3810 -0.0983 -2.4033 22 6 2.3224 1.3446 -2.6496 23 1 -0.3633 0.6156 -0.8229 24 1 -0.3633 -1.0204 -0.1216 25 1 -0.3633 0.4050 0.9446 26 1 1.9197 -1.9109 3.4388 27 1 2.0002 -2.7753 -0.5763 28 1 2.9805 -4.4198 -2.9125 29 1 3.9531 -2.0480 -6.3243 30 1 3.3329 -0.0047 -5.1188 31 1 3.2737 1.7994 -2.3731 32 1 2.1271 1.5252 -3.7067 33 1 1.5229 1.7830 -2.0523 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259509630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:11 Heat of formation + Delta-G solvation = 4.481929 kcal Electronic energy + Delta-G solvation = -17406.139783 eV Core-core repulsion = 14539.475298 eV Total energy + Delta-G solvation = -2866.664485 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -48.53938 -40.97171 -36.79468 -34.27356 -32.48789 -31.36092 -29.83883 -27.83574 -25.79658 -24.81808 -22.92673 -21.36170 -20.92602 -18.89961 -17.44892 -16.90016 -16.75444 -15.69829 -15.36754 -14.90425 -14.72873 -14.03002 -13.81631 -13.19774 -12.90989 -12.64991 -12.58979 -12.53072 -12.40901 -12.06711 -11.86407 -11.47641 -10.97754 -10.59854 -10.57696 -10.45402 -9.96406 -9.91973 -9.36294 -9.06492 -8.29542 -7.63877 -7.18249 -6.55840 -4.16235 1.30197 1.69137 3.18004 3.27261 3.30536 3.34659 3.52242 4.03823 4.41109 4.56195 4.82864 4.98066 5.11450 5.13259 5.30813 5.39479 5.47518 5.62014 5.78981 5.91990 6.02432 6.18177 6.29431 6.40099 6.44534 6.54496 6.57892 6.66508 6.86478 7.13368 7.17018 7.36912 7.58541 7.74684 8.04883 8.31219 8.81641 9.49071 10.81472 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.006041 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.522546 B = 4633.891307 C = 5151.912474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.072 3.928 3 H 0.028 0.972 4 C -0.602 4.602 5 H 0.068 0.932 6 C 0.040 3.960 7 N -0.893 5.893 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.284 1.284 12 C 0.146 3.854 13 C -0.208 4.208 14 C -0.076 4.076 15 C -0.110 4.110 16 C 0.058 3.942 17 F -0.150 7.150 18 C -0.148 4.148 19 C -0.099 4.099 20 C 0.078 3.922 21 N -0.489 5.489 22 C 0.079 3.921 23 H 0.021 0.979 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.272 0.728 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 2.668 -14.321 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.052 3.948 3 H 0.046 0.954 4 C -0.639 4.639 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.526 5.526 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.210 1.210 12 C 0.040 3.960 13 C -0.231 4.231 14 C -0.082 4.082 15 C -0.129 4.129 16 C 0.037 3.963 17 F -0.129 7.129 18 C -0.168 4.168 19 C -0.120 4.120 20 C -0.028 4.028 21 N -0.173 5.173 22 C -0.063 4.063 23 H 0.040 0.960 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.166 0.834 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.237 4.159 -13.226 13.866 hybrid contribution 0.443 -1.345 -1.295 1.919 sum 0.679 2.814 -14.521 14.807 Atomic orbital electron populations 1.22156 0.97262 1.00582 0.99688 1.17917 0.92491 0.95221 0.89179 0.95396 1.21869 1.41076 1.11087 0.89886 0.91404 1.25668 0.93387 1.05629 0.91992 1.70833 1.43332 1.06630 1.31777 0.84191 0.77073 0.76180 0.76444 1.20869 1.20265 1.21013 1.21171 0.95990 0.92601 0.86226 1.21398 1.11876 0.95116 0.94715 1.19105 1.02548 0.91213 0.95333 1.20361 1.01439 0.98535 0.92603 1.17230 1.05528 0.82302 0.91225 1.91434 1.90538 1.51014 1.79950 1.20535 1.05239 0.90547 1.00461 1.19702 1.02627 0.98176 0.91454 1.18257 1.03539 0.88996 0.92017 1.44010 1.56414 1.05785 1.11062 1.21873 1.03328 0.78801 1.02337 0.96003 0.93087 0.92280 0.91826 0.83420 0.85198 0.85225 0.85984 0.91485 0.90693 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.90 37.16 0.33 -2.54 16 2 C 0.07 1.60 1.83 -92.92 -0.17 1.43 16 3 H 0.03 0.61 5.93 -51.93 -0.31 0.30 16 4 C -0.60 -15.91 8.48 -34.44 -0.29 -16.20 16 5 H 0.07 1.94 6.85 -52.49 -0.36 1.58 16 6 C 0.04 1.09 5.20 -17.82 -0.09 1.00 16 7 N -0.89 -26.14 13.70 55.43 0.76 -25.38 16 8 Si 1.03 23.52 26.43 -169.99 -4.49 19.03 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -5.74 6.12 56.52 0.35 -5.39 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.15 3.05 5.77 -81.78 -0.47 2.57 16 13 C -0.21 -4.35 9.92 -37.67 -0.37 -4.73 16 14 C -0.08 -1.44 6.37 -105.14 -0.67 -2.11 16 15 C -0.11 -1.85 10.07 -39.21 -0.40 -2.25 16 16 C 0.06 0.90 7.29 -39.45 -0.29 0.61 16 17 F -0.15 -2.31 17.26 2.25 0.04 -2.27 16 18 C -0.15 -2.06 9.99 -39.48 -0.39 -2.45 16 19 C -0.10 -1.41 9.95 -39.46 -0.39 -1.81 16 20 C 0.08 1.36 6.81 -83.95 -0.57 0.79 16 21 N -0.49 -8.70 3.18 -117.18 -0.37 -9.08 16 22 C 0.08 1.05 10.56 59.85 0.63 1.68 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.06 1.26 5.43 -51.93 -0.28 0.98 16 26 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 27 H 0.15 3.17 7.47 -52.49 -0.39 2.78 16 28 H 0.13 1.99 8.06 -52.48 -0.42 1.56 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.08 1.10 7.40 -51.93 -0.38 0.71 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -29.12 280.53 -6.88 -36.00 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -3.89 Total: 1.49 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -3.15 Total: -24.01 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.39 Total: -34.46 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.49 Total: 19.03 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.12 -6.88 -36.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259509630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.483 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds