Wall clock time and date at job start Mon Mar 30 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47136 * 2 1 4 4 C 1.50697 * 109.47005 * 120.00300 * 2 1 3 5 5 H 1.07998 * 119.99721 * 114.37853 * 4 2 1 6 6 C 1.37875 * 120.00157 * 294.37594 * 4 2 1 7 7 N 1.31516 * 119.99869 * 157.25458 * 6 4 2 8 8 Si 1.86799 * 120.00196 * 337.25759 * 6 4 2 9 9 H 1.48497 * 109.47444 * 179.97438 * 8 6 4 10 10 H 1.48503 * 109.46943 * 59.99670 * 8 6 4 11 11 H 1.48508 * 109.47095 * 300.00013 * 8 6 4 12 12 C 1.50703 * 109.46972 * 240.00420 * 2 1 3 13 13 C 1.34245 * 125.03303 * 275.02511 * 12 2 1 14 14 C 1.46483 * 107.00947 * 179.97438 * 13 12 2 15 15 C 1.39667 * 133.97368 * 180.02562 * 14 13 12 16 16 C 1.37795 * 119.62870 * 179.97438 * 15 14 13 17 17 F 1.35105 * 119.83064 * 179.97438 * 16 15 14 18 18 C 1.39031 * 120.33415 * 359.97438 * 16 15 14 19 19 C 1.37710 * 120.64707 * 0.04081 * 18 16 15 20 20 C 1.39093 * 119.95379 * 359.95820 * 19 18 16 21 21 N 1.36804 * 125.03543 * 94.71782 * 12 2 1 22 22 C 1.46500 * 125.06741 * 0.04118 * 21 12 2 23 23 H 1.09003 * 109.46825 * 53.20154 * 1 2 3 24 24 H 1.08999 * 109.47188 * 173.20256 * 1 2 3 25 25 H 1.09004 * 109.46702 * 293.20710 * 1 2 3 26 26 H 0.96994 * 120.00381 * 354.93370 * 7 6 4 27 27 H 1.08001 * 126.49017 * 359.96489 * 13 12 2 28 28 H 1.08004 * 120.18597 * 359.97438 * 15 14 13 29 29 H 1.08000 * 119.67480 * 180.02562 * 18 16 15 30 30 H 1.08005 * 120.01921 * 180.02562 * 19 18 16 31 31 H 1.09002 * 109.47619 * 90.00085 * 22 21 12 32 32 H 1.09006 * 109.47048 * 209.99628 * 22 21 12 33 33 H 1.09004 * 109.47131 * 329.99659 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5763 -1.6384 1.1338 6 6 1.7975 -0.1758 2.4794 7 7 1.8149 -0.9521 3.5409 8 14 1.4545 1.6512 2.6639 9 1 1.2361 1.9716 4.0973 10 1 0.2403 2.0078 1.8868 11 1 2.6140 2.4265 2.1540 12 6 2.0323 -0.7103 -1.2305 13 6 2.1984 -2.0380 -1.3402 14 6 2.6995 -2.2969 -2.6920 15 6 3.0557 -3.4536 -3.3892 16 6 3.5036 -3.3550 -4.6886 17 9 3.8497 -4.4712 -5.3666 18 6 3.6011 -2.1128 -5.3054 19 6 3.2536 -0.9644 -4.6297 20 6 2.7991 -1.0413 -3.3173 21 7 2.3810 -0.0983 -2.4033 22 6 2.3224 1.3446 -2.6496 23 1 -0.3633 0.6156 -0.8229 24 1 -0.3633 -1.0204 -0.1216 25 1 -0.3633 0.4050 0.9446 26 1 1.9197 -1.9109 3.4388 27 1 2.0002 -2.7753 -0.5763 28 1 2.9805 -4.4198 -2.9125 29 1 3.9531 -2.0480 -6.3243 30 1 3.3329 -0.0047 -5.1188 31 1 3.2737 1.7994 -2.3731 32 1 2.1271 1.5252 -3.7067 33 1 1.5229 1.7830 -2.0523 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259509630.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:09 Heat of formation + Delta-G solvation = -11.387012 kcal Electronic energy + Delta-G solvation = -17406.827912 eV Core-core repulsion = 14539.475298 eV Total energy + Delta-G solvation = -2867.352614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.77161 -42.32548 -38.12738 -36.04121 -33.87190 -33.20424 -31.03990 -29.22288 -27.06407 -26.67060 -24.44627 -22.67235 -22.38813 -20.51557 -19.26268 -18.29104 -18.03294 -17.05708 -16.61262 -16.23878 -16.08074 -15.52846 -15.25192 -14.73732 -14.47331 -14.07578 -13.98693 -13.85985 -13.71145 -13.53882 -13.25249 -13.04710 -12.60585 -12.37418 -11.94406 -11.76659 -11.66324 -11.60791 -11.04493 -10.65955 -10.38291 -9.00702 -8.74595 -8.53053 -6.33629 0.03539 0.43599 1.48597 1.55503 1.73818 1.78694 1.91176 2.52816 2.74319 3.03375 3.31705 3.64575 3.88185 3.94745 4.04458 4.30152 4.38790 4.46268 4.47947 4.64807 4.72471 4.76837 4.82812 4.88720 5.00584 5.07657 5.15493 5.21949 5.36510 5.51416 5.77524 5.80375 6.00177 6.06580 6.33127 6.46010 6.59135 7.41216 8.62339 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.006041 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.522546 B = 4633.891307 C = 5151.912474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 H 0.045 0.955 4 C -0.603 4.603 5 H 0.024 0.976 6 C -0.012 4.012 7 N -0.930 5.930 8 Si 1.075 2.925 9 H -0.292 1.292 10 H -0.238 1.238 11 H -0.263 1.263 12 C 0.130 3.870 13 C -0.238 4.238 14 C -0.107 4.107 15 C -0.128 4.128 16 C 0.056 3.944 17 F -0.149 7.149 18 C -0.134 4.134 19 C -0.086 4.086 20 C 0.071 3.929 21 N -0.486 5.486 22 C 0.066 3.934 23 H 0.058 0.942 24 H 0.035 0.965 25 H 0.052 0.948 26 H 0.253 0.747 27 H 0.117 0.883 28 H 0.129 0.871 29 H 0.169 0.831 30 H 0.166 0.834 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 5.692 -17.822 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.054 3.946 3 H 0.063 0.937 4 C -0.641 4.641 5 H 0.042 0.958 6 C -0.211 4.211 7 N -0.565 5.565 8 Si 0.895 3.105 9 H -0.218 1.218 10 H -0.162 1.162 11 H -0.188 1.188 12 C 0.022 3.978 13 C -0.262 4.262 14 C -0.112 4.112 15 C -0.148 4.148 16 C 0.036 3.964 17 F -0.128 7.128 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.035 4.035 21 N -0.169 5.169 22 C -0.074 4.074 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.135 0.865 28 H 0.147 0.853 29 H 0.187 0.813 30 H 0.184 0.816 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.274 7.186 -16.775 18.251 hybrid contribution 0.514 -2.442 -0.327 2.517 sum 0.788 4.744 -17.102 17.765 Atomic orbital electron populations 1.22034 0.95817 1.00515 1.00757 1.17777 0.93523 0.95344 0.87987 0.93722 1.22028 1.40030 1.09722 0.92316 0.95770 1.27175 0.92682 1.09558 0.91656 1.70969 1.46737 1.05779 1.33004 0.83704 0.79304 0.70858 0.76647 1.21797 1.16190 1.18775 1.20814 0.97210 0.92489 0.87256 1.21308 1.13704 0.95416 0.95787 1.19160 1.04259 0.93100 0.94658 1.20454 1.02421 0.98247 0.93630 1.17411 1.05024 0.83289 0.90704 1.91441 1.90435 1.51215 1.79690 1.20997 1.03200 0.89241 1.01895 1.20156 1.00502 1.00204 0.89744 1.18618 1.03653 0.88050 0.93175 1.44111 1.55525 1.07536 1.09741 1.22280 1.04238 0.75906 1.04974 0.92301 0.94539 0.92951 0.93780 0.86489 0.85332 0.81322 0.81630 0.90407 0.86983 0.89217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.90 71.98 0.64 -4.71 16 2 C 0.07 3.26 1.83 -12.29 -0.02 3.24 16 3 H 0.04 1.84 5.93 -2.39 -0.01 1.83 16 4 C -0.60 -33.31 8.48 25.60 0.22 -33.09 16 5 H 0.02 1.50 6.85 -2.91 -0.02 1.48 16 6 C -0.01 -0.65 5.20 84.65 0.44 -0.21 16 7 N -0.93 -57.15 13.70 21.45 0.29 -56.86 16 8 Si 1.07 46.50 26.43 68.60 1.81 48.32 16 9 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.24 -8.82 6.12 99.48 0.61 -8.21 16 11 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 12 C 0.13 5.46 5.77 40.87 0.24 5.69 16 13 C -0.24 -10.59 9.92 23.51 0.23 -10.36 16 14 C -0.11 -4.08 6.37 -20.20 -0.13 -4.21 16 15 C -0.13 -4.36 10.07 22.51 0.23 -4.13 16 16 C 0.06 1.64 7.29 22.36 0.16 1.80 16 17 F -0.15 -4.28 17.26 44.97 0.78 -3.51 16 18 C -0.13 -3.12 9.99 22.34 0.22 -2.90 16 19 C -0.09 -2.04 9.95 22.35 0.22 -1.82 16 20 C 0.07 2.32 6.81 38.99 0.27 2.59 16 21 N -0.49 -16.20 3.18 -524.64 -1.67 -17.87 16 22 C 0.07 1.47 10.56 127.77 1.35 2.82 16 23 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 2.14 5.43 -2.38 -0.01 2.13 16 26 H 0.25 15.94 8.73 -92.71 -0.81 15.13 16 27 H 0.12 5.68 7.47 -2.91 -0.02 5.66 16 28 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 29 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 1.65 8.10 -2.38 -0.02 1.63 16 33 H 0.09 1.92 7.40 -2.39 -0.02 1.90 16 Total: -1.00 -67.67 280.53 6.26 -61.41 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.98 Total: 13.80 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 4.07 Total: -45.29 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.38 Total: -74.72 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.78 Total: -3.51 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.81 Total: 48.32 kcal Total: -67.67 6.26 -61.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259509630.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.021 kcal (2) G-P(sol) polarization free energy of solvation -67.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds