Wall clock time and date at job start Mon Mar 30 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 C 1.34247 * 125.03783 * 85.02224 * 12 2 1 14 14 C 1.46487 * 107.00812 * 179.97438 * 13 12 2 15 15 C 1.39701 * 134.01146 * 179.97438 * 14 13 12 16 16 C 1.36598 * 119.80793 * 180.02562 * 15 14 13 17 17 C 1.38844 * 120.54749 * 359.97438 * 16 15 14 18 18 C 1.37934 * 120.63384 * 0.02562 * 17 16 15 19 19 F 1.35103 * 120.13045 * 180.02562 * 18 17 16 20 20 C 1.39317 * 119.73974 * 359.97438 * 18 17 16 21 21 N 1.36797 * 125.03546 * 264.71769 * 12 2 1 22 22 C 1.46498 * 125.07273 * 0.02562 * 21 12 2 23 23 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 25 25 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 26 26 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 27 27 H 1.07992 * 126.49985 * 0.02562 * 13 12 2 28 28 H 1.07999 * 120.09443 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.72825 * 179.97438 * 16 15 14 30 30 H 1.08004 * 119.68009 * 180.02562 * 17 16 15 31 31 H 1.08993 * 109.47119 * 89.99990 * 22 21 12 32 32 H 1.09000 * 109.47186 * 210.00133 * 22 21 12 33 33 H 1.09004 * 109.47381 * 330.00145 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 6 2.1992 -2.0380 1.3399 14 6 2.7010 -2.2968 2.6916 15 6 3.0585 -3.4531 3.3894 16 6 3.5034 -3.3586 4.6774 17 6 3.6042 -2.1219 5.3003 18 6 3.2568 -0.9672 4.6305 19 9 3.3593 0.2310 5.2462 20 6 2.8007 -1.0413 3.3162 21 7 2.3912 -0.0975 2.3997 22 6 2.3441 1.3465 2.6421 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9041 -0.5278 -4.4374 27 1 2.0018 -2.7753 0.5760 28 1 2.9826 -4.4189 2.9121 29 1 3.7790 -4.2534 5.2158 30 1 3.9581 -2.0634 6.3190 31 1 1.3678 1.6156 3.0450 32 1 3.1202 1.6204 3.3568 33 1 2.5094 1.8779 1.7048 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259510351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:19 Heat of formation + Delta-G solvation = 13.929174 kcal Electronic energy + Delta-G solvation = -17647.564579 eV Core-core repulsion = 14781.309758 eV Total energy + Delta-G solvation = -2866.254821 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.65597 -40.89167 -37.01399 -34.37574 -32.15812 -31.45872 -29.73636 -28.08195 -25.80606 -25.10871 -23.00384 -21.63094 -20.90197 -18.87684 -17.21706 -16.77548 -16.27009 -15.71126 -15.61201 -14.99079 -14.67029 -14.47918 -14.12639 -13.27462 -12.83650 -12.73205 -12.58911 -12.43859 -12.27322 -12.04524 -11.58371 -11.29272 -11.18346 -10.94761 -10.76487 -10.51148 -10.10399 -9.61173 -9.20012 -9.08596 -8.68788 -7.75743 -7.09498 -6.17568 -4.18928 1.30699 1.79724 3.16432 3.17747 3.26157 3.26808 3.30847 4.09959 4.29173 4.49663 4.89711 5.09236 5.13077 5.14337 5.29939 5.44703 5.56302 5.69118 5.76093 5.88115 6.08659 6.17030 6.31336 6.43950 6.46482 6.50821 6.59734 6.70625 6.82294 7.06455 7.16738 7.35697 7.48685 7.73474 7.78322 8.40601 8.87510 9.41232 10.94664 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034919 B = 0.006671 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.669400 B = 4196.259036 C = 4735.001445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.064 3.936 3 H 0.036 0.964 4 C -0.512 4.512 5 H 0.085 0.915 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.295 1.295 12 C 0.141 3.859 13 C -0.201 4.201 14 C -0.078 4.078 15 C -0.081 4.081 16 C -0.133 4.133 17 C -0.150 4.150 18 C 0.084 3.916 19 F -0.150 7.150 20 C 0.054 3.946 21 N -0.482 5.482 22 C 0.075 3.925 23 H 0.060 0.940 24 H 0.028 0.972 25 H 0.046 0.954 26 H 0.266 0.734 27 H 0.154 0.846 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.058 0.115 14.162 14.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.044 3.956 3 H 0.054 0.946 4 C -0.550 4.550 5 H 0.103 0.897 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.223 1.223 12 C 0.034 3.966 13 C -0.224 4.224 14 C -0.084 4.084 15 C -0.099 4.099 16 C -0.152 4.152 17 C -0.170 4.170 18 C 0.062 3.938 19 F -0.129 7.129 20 C -0.053 4.053 21 N -0.165 5.165 22 C -0.067 4.067 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.172 0.828 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.045 0.523 13.998 14.008 hybrid contribution -0.545 1.163 -0.075 1.286 sum -0.500 1.686 13.924 14.034 Atomic orbital electron populations 1.22134 0.97488 1.01623 0.98728 1.18049 0.92183 0.95896 0.89437 0.94626 1.20908 1.32543 1.14069 0.87511 0.89658 1.24950 0.95606 0.96556 0.95738 1.69866 1.45075 1.40104 0.97975 0.86889 0.80795 0.83719 0.77024 1.20362 1.19411 1.22271 1.21013 0.96690 0.92643 0.86219 1.21499 1.10990 0.95066 0.94814 1.19281 1.02889 0.91117 0.95117 1.20313 0.98575 0.97115 0.93917 1.20319 1.03262 0.96448 0.95191 1.20616 1.05052 0.90968 1.00371 1.16678 1.07184 0.81094 0.88803 1.91409 1.94569 1.44083 1.82860 1.18189 1.05923 0.90391 0.90821 1.43911 1.55952 1.05694 1.10893 1.21966 1.02625 0.78628 1.03434 0.92064 0.95269 0.93549 0.92392 0.82806 0.85693 0.85708 0.85318 0.91668 0.90335 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.66 37.16 0.32 -2.64 16 2 C 0.06 1.44 2.04 -92.92 -0.19 1.25 16 3 H 0.04 0.81 5.83 -51.93 -0.30 0.50 16 4 C -0.51 -13.67 8.79 -34.44 -0.30 -13.98 16 5 H 0.09 2.47 6.99 -52.49 -0.37 2.10 16 6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 7 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 8 Si 0.89 20.86 24.37 -169.99 -4.14 16.72 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 11 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 12 C 0.14 2.96 5.77 -81.78 -0.47 2.49 16 13 C -0.20 -4.12 9.90 -37.67 -0.37 -4.49 16 14 C -0.08 -1.45 6.37 -105.14 -0.67 -2.12 16 15 C -0.08 -1.22 10.05 -39.63 -0.40 -1.62 16 16 C -0.13 -1.75 9.97 -39.95 -0.40 -2.15 16 17 C -0.15 -2.08 9.99 -39.47 -0.39 -2.48 16 18 C 0.08 1.38 7.32 -39.29 -0.29 1.09 16 19 F -0.15 -2.38 15.84 2.25 0.04 -2.35 16 20 C 0.05 0.99 6.82 -83.91 -0.57 0.42 16 21 N -0.48 -9.11 3.18 -117.14 -0.37 -9.49 16 22 C 0.08 1.15 10.60 59.85 0.63 1.79 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.99 3.27 -51.93 -0.17 0.82 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.15 3.18 7.56 -52.49 -0.40 2.78 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 1.09 6.97 -51.93 -0.36 0.73 16 33 H 0.09 1.31 6.81 -51.93 -0.35 0.96 16 LS Contribution 273.93 15.07 4.13 4.13 Total: -1.00 -29.39 273.93 -6.45 -35.84 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -3.67 Total: 1.12 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -3.20 Total: -20.50 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.40 Total: -34.96 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.14 Total: 16.72 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.39 -6.45 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259510351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.768 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds