Wall clock time and date at job start Mon Mar 30 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 C 1.34247 * 125.03783 * 85.02224 * 12 2 1 14 14 C 1.46487 * 107.00812 * 179.97438 * 13 12 2 15 15 C 1.39701 * 134.01146 * 179.97438 * 14 13 12 16 16 C 1.36598 * 119.80793 * 180.02562 * 15 14 13 17 17 C 1.38844 * 120.54749 * 359.97438 * 16 15 14 18 18 C 1.37934 * 120.63384 * 0.02562 * 17 16 15 19 19 F 1.35103 * 120.13045 * 180.02562 * 18 17 16 20 20 C 1.39317 * 119.73974 * 359.97438 * 18 17 16 21 21 N 1.36797 * 125.03546 * 264.71769 * 12 2 1 22 22 C 1.46498 * 125.07273 * 0.02562 * 21 12 2 23 23 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 25 25 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 26 26 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 27 27 H 1.07992 * 126.49985 * 0.02562 * 13 12 2 28 28 H 1.07999 * 120.09443 * 359.97438 * 15 14 13 29 29 H 1.07999 * 119.72825 * 179.97438 * 16 15 14 30 30 H 1.08004 * 119.68009 * 180.02562 * 17 16 15 31 31 H 1.08993 * 109.47119 * 89.99990 * 22 21 12 32 32 H 1.09000 * 109.47186 * 210.00133 * 22 21 12 33 33 H 1.09004 * 109.47381 * 330.00145 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 6 2.1992 -2.0380 1.3399 14 6 2.7010 -2.2968 2.6916 15 6 3.0585 -3.4531 3.3894 16 6 3.5034 -3.3586 4.6774 17 6 3.6042 -2.1219 5.3003 18 6 3.2568 -0.9672 4.6305 19 9 3.3593 0.2310 5.2462 20 6 2.8007 -1.0413 3.3162 21 7 2.3912 -0.0975 2.3997 22 6 2.3441 1.3465 2.6421 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9041 -0.5278 -4.4374 27 1 2.0018 -2.7753 0.5760 28 1 2.9826 -4.4189 2.9121 29 1 3.7790 -4.2534 5.2158 30 1 3.9581 -2.0634 6.3190 31 1 1.3678 1.6156 3.0450 32 1 3.1202 1.6204 3.3568 33 1 2.5094 1.8779 1.7048 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259510351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:19 Heat of formation + Delta-G solvation = -2.470405 kcal Electronic energy + Delta-G solvation = -17648.275718 eV Core-core repulsion = 14781.309758 eV Total energy + Delta-G solvation = -2866.965960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.85790 -42.26302 -38.30091 -36.14541 -33.69127 -33.23467 -30.94435 -29.45623 -27.27147 -26.88178 -24.56667 -22.91149 -22.30599 -20.44678 -18.77500 -18.27072 -17.76481 -17.11985 -16.89754 -16.53775 -16.10814 -15.80661 -15.43073 -15.01593 -14.33366 -14.20337 -14.04056 -13.89388 -13.69232 -13.39045 -13.23528 -12.89546 -12.49079 -12.42682 -12.27809 -11.97644 -11.82733 -11.40880 -11.17581 -10.77905 -10.39169 -9.09433 -8.47043 -8.29097 -6.35611 0.05470 0.58348 1.31538 1.35723 1.46184 1.75502 1.84108 2.31048 2.84964 3.04820 3.28575 3.68815 3.79849 3.89891 4.05294 4.28595 4.36104 4.42558 4.48471 4.57895 4.61931 4.69644 4.81028 4.86063 5.01188 5.10468 5.23807 5.32925 5.41410 5.51808 5.61821 5.86055 5.98925 6.15605 6.33224 6.42327 6.71807 7.28087 8.86289 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034919 B = 0.006671 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.669400 B = 4196.259036 C = 4735.001445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.068 3.932 3 H 0.040 0.960 4 C -0.514 4.514 5 H 0.044 0.956 6 C 0.017 3.983 7 N -0.944 5.944 8 Si 0.946 3.054 9 H -0.264 1.264 10 H -0.244 1.244 11 H -0.299 1.299 12 C 0.119 3.881 13 C -0.220 4.220 14 C -0.104 4.104 15 C -0.088 4.088 16 C -0.118 4.118 17 C -0.132 4.132 18 C 0.066 3.934 19 F -0.149 7.149 20 C 0.037 3.963 21 N -0.487 5.487 22 C 0.070 3.930 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.042 0.958 26 H 0.267 0.733 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.286 0.753 17.182 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.048 3.952 3 H 0.058 0.942 4 C -0.552 4.552 5 H 0.062 0.938 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.773 3.227 9 H -0.190 1.190 10 H -0.168 1.168 11 H -0.226 1.226 12 C 0.012 3.988 13 C -0.244 4.244 14 C -0.109 4.109 15 C -0.106 4.106 16 C -0.137 4.137 17 C -0.152 4.152 18 C 0.044 3.956 19 F -0.128 7.128 20 C -0.070 4.070 21 N -0.170 5.170 22 C -0.071 4.071 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.186 0.814 30 H 0.183 0.817 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.299 1.171 17.061 17.104 hybrid contribution -0.316 0.799 -0.874 1.225 sum -0.615 1.970 16.187 16.318 Atomic orbital electron populations 1.22037 0.95847 1.01715 0.99915 1.17876 0.93463 0.95436 0.88413 0.94200 1.21119 1.31487 1.12933 0.89662 0.93814 1.25801 0.97146 0.99933 0.95194 1.70023 1.47314 1.42403 0.98645 0.85887 0.79282 0.79986 0.77551 1.18973 1.16766 1.22647 1.20700 0.98446 0.92848 0.86844 1.21470 1.11971 0.95044 0.95952 1.19457 1.04346 0.92792 0.94329 1.20666 0.98234 0.96853 0.94886 1.20817 1.00811 0.97873 0.94157 1.21149 1.02331 0.90100 1.01614 1.16914 1.08227 0.82095 0.88314 1.91409 1.94644 1.44136 1.82594 1.18532 1.06447 0.90227 0.91754 1.43994 1.55857 1.06937 1.10230 1.22183 1.04175 0.76849 1.03892 0.92681 0.92253 0.93905 0.92361 0.84765 0.83988 0.81376 0.81734 0.89843 0.89097 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.59 8.66 71.98 0.62 -4.97 16 2 C 0.07 3.08 2.04 -12.28 -0.03 3.06 16 3 H 0.04 1.78 5.83 -2.39 -0.01 1.76 16 4 C -0.51 -28.60 8.79 25.60 0.22 -28.38 16 5 H 0.04 2.72 6.99 -2.91 -0.02 2.70 16 6 C 0.02 0.96 5.45 84.65 0.46 1.42 16 7 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 8 Si 0.95 42.91 24.37 68.60 1.67 44.58 16 9 H -0.26 -11.35 6.87 99.48 0.68 -10.67 16 10 H -0.24 -9.99 6.53 99.48 0.65 -9.34 16 11 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 12 C 0.12 5.10 5.77 40.88 0.24 5.34 16 13 C -0.22 -9.48 9.90 23.51 0.23 -9.24 16 14 C -0.10 -3.83 6.37 -20.20 -0.13 -3.96 16 15 C -0.09 -2.49 10.05 22.24 0.22 -2.27 16 16 C -0.12 -2.59 9.97 22.03 0.22 -2.37 16 17 C -0.13 -3.11 9.99 22.34 0.22 -2.88 16 18 C 0.07 2.00 7.32 22.46 0.16 2.17 16 19 F -0.15 -4.33 15.84 44.97 0.71 -3.62 16 20 C 0.04 1.34 6.82 39.04 0.27 1.60 16 21 N -0.49 -18.21 3.18 -524.53 -1.67 -19.88 16 22 C 0.07 2.03 10.60 127.77 1.35 3.38 16 23 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 27 H 0.13 6.06 7.56 -2.91 -0.02 6.04 16 28 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.09 2.37 6.97 -2.39 -0.02 2.35 16 33 H 0.09 2.51 6.81 -2.38 -0.02 2.49 16 Total: -1.00 -66.30 273.93 6.13 -60.17 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.04 Total: 13.39 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 4.07 Total: -37.12 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.37 Total: -77.39 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.71 Total: -3.62 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.67 Total: 44.58 kcal Total: -66.30 6.13 -60.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259510351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.695 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds