Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46492 * 126.49851 * 2 1 4 4 C 1.39672 * 133.96611 * 359.97438 * 3 2 1 5 5 C 1.37788 * 119.62765 * 180.02562 * 4 3 2 6 6 F 1.35104 * 119.83597 * 179.97438 * 5 4 3 7 7 C 1.39039 * 120.33236 * 0.25078 * 5 4 3 8 8 C 1.37709 * 120.64543 * 359.47097 * 7 5 4 9 9 C 1.39093 * 119.95570 * 0.54803 * 8 7 5 10 10 N 1.37820 * 133.40218 * 179.72899 * 9 8 7 11 11 H 0.96997 * 125.06369 * 0.02562 * 10 9 8 12 12 C 1.34235 * 126.49431 * 179.97438 * 2 1 3 13 13 C 1.50698 * 125.03634 * 359.97438 * 12 2 1 14 14 H 1.08999 * 109.47328 * 0.05657 * 13 12 2 15 15 C 1.52995 * 109.47714 * 240.05437 * 13 12 2 16 16 C 1.50705 * 109.46907 * 120.04953 * 13 12 2 17 17 H 1.08001 * 120.00259 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99911 * 180.02562 * 16 13 12 19 19 N 1.31511 * 119.99858 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99991 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47210 * 59.99798 * 20 18 16 22 22 H 1.48502 * 109.47109 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46963 * 300.00137 * 20 18 16 24 24 H 1.09007 * 109.46949 * 90.02380 * 1 2 3 25 25 H 1.08995 * 109.47031 * 210.02313 * 1 2 3 26 26 H 1.08999 * 109.47238 * 330.03192 * 1 2 3 27 27 H 1.08001 * 120.18790 * 0.02632 * 4 3 2 28 28 H 1.07999 * 119.67558 * 179.72402 * 7 5 4 29 29 H 1.08003 * 120.02556 * 180.25748 * 8 7 5 30 30 H 1.09001 * 109.47161 * 300.00000 * 15 13 12 31 31 H 1.09004 * 109.47239 * 59.99582 * 15 13 12 32 32 H 1.08998 * 109.47379 * 179.97438 * 15 13 12 33 33 H 0.97001 * 119.99623 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1470 2.5550 -0.0004 5 6 3.2153 3.4252 -0.0008 6 9 2.9964 4.7584 -0.0018 7 6 4.5176 2.9382 -0.0060 8 6 4.7601 1.5826 0.0001 9 6 3.6961 0.6867 0.0000 10 7 3.6167 -0.6892 0.0004 11 1 4.3772 -1.2912 0.0012 12 6 2.3054 -1.0791 0.0005 13 6 1.8280 -2.5085 0.0017 14 1 0.7381 -2.5276 0.0011 15 6 2.3497 -3.2196 1.2518 16 6 2.3432 -3.2112 -1.2279 17 1 2.9556 -2.6764 -1.9389 18 6 2.0330 -4.5370 -1.4452 19 7 1.2869 -5.1881 -0.5798 20 14 2.6722 -5.4082 -2.9689 21 1 4.1570 -5.3828 -2.9674 22 1 2.2007 -6.8163 -2.9685 23 1 2.1667 -4.7178 -4.1826 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8903 0.5133 27 1 1.1364 2.9360 -0.0005 28 1 5.3471 3.6298 -0.0108 29 1 5.7758 1.2153 0.0002 30 1 3.4396 -3.2006 1.2524 31 1 1.9770 -2.7113 2.1412 32 1 2.0040 -4.2533 1.2529 33 1 1.0684 -6.1207 -0.7329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259519450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -11.481820 kcal Electronic energy + Delta-G solvation = -17333.620304 eV Core-core repulsion = 14466.263579 eV Total energy + Delta-G solvation = -2867.356725 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.50658 -40.83902 -36.61921 -34.02971 -32.55881 -30.88009 -29.61736 -27.88352 -25.86990 -25.30292 -22.95936 -21.72916 -20.38730 -18.52865 -17.28314 -17.01392 -16.30776 -15.53930 -15.25865 -14.90115 -14.23132 -13.99657 -13.72949 -13.28433 -12.77742 -12.59237 -12.46678 -12.25972 -11.98358 -11.65961 -11.40292 -11.16956 -11.03076 -10.73156 -10.56502 -10.36127 -10.33229 -9.73726 -9.27969 -9.13383 -8.54817 -7.59181 -7.02660 -6.17985 -4.27366 1.36397 1.76272 3.20799 3.26669 3.26872 3.36165 3.69534 4.06689 4.29574 4.60518 4.94481 5.13285 5.17021 5.44531 5.56145 5.69243 6.00024 6.10006 6.15067 6.28008 6.32955 6.40590 6.46374 6.55397 6.61957 6.77574 6.88295 6.93825 7.12378 7.27982 7.47540 7.57083 7.83784 7.87136 8.12105 8.19696 8.73975 9.39044 10.86904 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.005695 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.966388 B = 4915.092249 C = 5169.902320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.220 4.220 3 C -0.067 4.067 4 C -0.113 4.113 5 C 0.057 3.943 6 F -0.151 7.151 7 C -0.150 4.150 8 C -0.098 4.098 9 C 0.077 3.923 10 N -0.580 5.580 11 H 0.417 0.583 12 C 0.164 3.836 13 C 0.088 3.912 14 H 0.059 0.941 15 C -0.136 4.136 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.276 1.276 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.124 0.876 30 H 0.024 0.976 31 H 0.014 0.986 32 H 0.091 0.909 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.424 9.914 2.159 10.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.225 4.225 3 C -0.072 4.072 4 C -0.133 4.133 5 C 0.037 3.963 6 F -0.130 7.130 7 C -0.170 4.170 8 C -0.119 4.119 9 C -0.031 4.031 10 N -0.182 5.182 11 H 0.254 0.746 12 C 0.054 3.946 13 C 0.069 3.931 14 H 0.077 0.923 15 C -0.194 4.194 16 C -0.558 4.558 17 H 0.074 0.926 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.110 0.890 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.410 9.663 2.195 10.479 hybrid contribution 0.806 -0.520 -0.895 1.312 sum 4.216 9.142 1.299 10.151 Atomic orbital electron populations 1.19969 0.89868 1.01276 1.01149 1.19900 0.95158 0.89443 1.18007 1.18883 0.92520 0.92159 1.03672 1.20292 0.98106 0.91361 1.03503 1.17223 0.93872 0.76767 1.08456 1.91428 1.95706 1.31192 1.94712 1.20525 0.95106 0.95120 1.06243 1.19751 0.96843 0.91138 1.04157 1.18278 0.95195 0.84124 1.05514 1.41854 1.08352 1.04026 1.63925 0.74624 1.21290 0.81298 0.97912 0.94089 1.17792 0.97648 0.82371 0.95245 0.92340 1.21803 0.98318 1.03955 0.95310 1.20951 1.33268 0.95620 1.05987 0.92589 1.24922 0.94753 0.97290 0.96562 1.69849 1.36606 1.10617 1.35198 0.86592 0.79187 0.78606 0.83278 1.20284 1.21089 1.20119 0.92560 0.91677 0.93091 0.85435 0.85289 0.85808 0.95686 0.96707 0.89049 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.01 36.01 0.36 -0.76 16 2 C -0.22 -4.31 6.31 -102.71 -0.65 -4.95 16 3 C -0.07 -1.23 6.35 -105.14 -0.67 -1.90 16 4 C -0.11 -1.86 10.07 -39.21 -0.40 -2.26 16 5 C 0.06 0.89 7.29 -39.45 -0.29 0.60 16 6 F -0.15 -2.32 17.26 2.25 0.04 -2.28 16 7 C -0.15 -2.12 9.99 -39.48 -0.39 -2.52 16 8 C -0.10 -1.44 10.06 -39.46 -0.40 -1.84 16 9 C 0.08 1.35 7.27 -83.96 -0.61 0.74 16 10 N -0.58 -10.73 6.08 -6.95 -0.04 -10.77 16 11 H 0.42 6.99 8.96 -40.82 -0.37 6.63 16 12 C 0.16 3.40 5.52 -81.78 -0.45 2.95 16 13 C 0.09 2.05 2.63 -92.92 -0.24 1.80 16 14 H 0.06 1.45 6.67 -51.93 -0.35 1.10 16 15 C -0.14 -3.02 8.95 37.15 0.33 -2.69 16 16 C -0.52 -13.21 8.55 -34.44 -0.29 -13.50 16 17 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -23.53 11.32 55.43 0.63 -22.90 16 20 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.12 7.06 -51.93 -0.37 0.76 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 29 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 33 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 285.38 15.07 4.30 4.30 Total: -1.00 -26.80 285.38 -7.78 -34.59 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.89 Total: 4.57 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.79 Total: -22.68 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.59 Total: -33.67 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.80 -7.78 -34.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.104 kcal (2) G-P(sol) polarization free energy of solvation -26.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds