Wall clock time and date at job start Mon Mar 30 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46492 * 126.49851 * 2 1 4 4 C 1.39672 * 133.96611 * 359.97438 * 3 2 1 5 5 C 1.37788 * 119.62765 * 180.02562 * 4 3 2 6 6 F 1.35104 * 119.83597 * 179.97438 * 5 4 3 7 7 C 1.39039 * 120.33236 * 0.25078 * 5 4 3 8 8 C 1.37709 * 120.64543 * 359.47097 * 7 5 4 9 9 C 1.39093 * 119.95570 * 0.54803 * 8 7 5 10 10 N 1.37820 * 133.40218 * 179.72899 * 9 8 7 11 11 H 0.96997 * 125.06369 * 0.02562 * 10 9 8 12 12 C 1.34235 * 126.49431 * 179.97438 * 2 1 3 13 13 C 1.50698 * 125.03634 * 359.97438 * 12 2 1 14 14 H 1.08999 * 109.47328 * 0.05657 * 13 12 2 15 15 C 1.52995 * 109.47714 * 240.05437 * 13 12 2 16 16 C 1.50705 * 109.46907 * 120.04953 * 13 12 2 17 17 H 1.08001 * 120.00259 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99911 * 180.02562 * 16 13 12 19 19 N 1.31511 * 119.99858 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99991 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47210 * 59.99798 * 20 18 16 22 22 H 1.48502 * 109.47109 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46963 * 300.00137 * 20 18 16 24 24 H 1.09007 * 109.46949 * 90.02380 * 1 2 3 25 25 H 1.08995 * 109.47031 * 210.02313 * 1 2 3 26 26 H 1.08999 * 109.47238 * 330.03192 * 1 2 3 27 27 H 1.08001 * 120.18790 * 0.02632 * 4 3 2 28 28 H 1.07999 * 119.67558 * 179.72402 * 7 5 4 29 29 H 1.08003 * 120.02556 * 180.25748 * 8 7 5 30 30 H 1.09001 * 109.47161 * 300.00000 * 15 13 12 31 31 H 1.09004 * 109.47239 * 59.99582 * 15 13 12 32 32 H 1.08998 * 109.47379 * 179.97438 * 15 13 12 33 33 H 0.97001 * 119.99623 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1470 2.5550 -0.0004 5 6 3.2153 3.4252 -0.0008 6 9 2.9964 4.7584 -0.0018 7 6 4.5176 2.9382 -0.0060 8 6 4.7601 1.5826 0.0001 9 6 3.6961 0.6867 0.0000 10 7 3.6167 -0.6892 0.0004 11 1 4.3772 -1.2912 0.0012 12 6 2.3054 -1.0791 0.0005 13 6 1.8280 -2.5085 0.0017 14 1 0.7381 -2.5276 0.0011 15 6 2.3497 -3.2196 1.2518 16 6 2.3432 -3.2112 -1.2279 17 1 2.9556 -2.6764 -1.9389 18 6 2.0330 -4.5370 -1.4452 19 7 1.2869 -5.1881 -0.5798 20 14 2.6722 -5.4082 -2.9689 21 1 4.1570 -5.3828 -2.9674 22 1 2.2007 -6.8163 -2.9685 23 1 2.1667 -4.7178 -4.1826 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8903 0.5133 27 1 1.1364 2.9360 -0.0005 28 1 5.3471 3.6298 -0.0108 29 1 5.7758 1.2153 0.0002 30 1 3.4396 -3.2006 1.2524 31 1 1.9770 -2.7113 2.1412 32 1 2.0040 -4.2533 1.2529 33 1 1.0684 -6.1207 -0.7329 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259519450.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:11 Heat of formation + Delta-G solvation = -24.118071 kcal Electronic energy + Delta-G solvation = -17334.168253 eV Core-core repulsion = 14466.263579 eV Total energy + Delta-G solvation = -2867.904674 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.71181 -42.20714 -37.97445 -35.79934 -33.95374 -32.65060 -30.91353 -29.24900 -27.34026 -27.18456 -24.44862 -23.03486 -21.89879 -19.96747 -18.65202 -18.57782 -17.88002 -16.99023 -16.51643 -16.47318 -15.67509 -15.42378 -15.11773 -14.72469 -14.45763 -13.95195 -13.76654 -13.62883 -13.48907 -13.26022 -12.96277 -12.86792 -12.75840 -12.34878 -12.18803 -11.95975 -11.85037 -11.40286 -11.07850 -10.52532 -10.47500 -8.92351 -8.43895 -8.12484 -6.28991 0.11066 0.50949 1.41528 1.43480 1.50183 1.85765 2.32918 2.42050 2.80103 3.14884 3.36995 3.74464 3.98844 4.17574 4.30884 4.41129 4.53503 4.71879 4.85453 4.90840 4.92892 4.97295 5.04919 5.12295 5.19017 5.20733 5.28217 5.48320 5.49709 5.66391 5.87871 5.98403 6.02547 6.23209 6.35628 6.76000 6.78551 7.40081 8.89889 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.005695 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.966388 B = 4915.092249 C = 5169.902320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.226 4.226 3 C -0.093 4.093 4 C -0.119 4.119 5 C 0.053 3.947 6 F -0.149 7.149 7 C -0.136 4.136 8 C -0.094 4.094 9 C 0.067 3.933 10 N -0.579 5.579 11 H 0.421 0.579 12 C 0.133 3.867 13 C 0.092 3.908 14 H 0.033 0.967 15 C -0.125 4.125 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.024 3.976 19 N -0.910 5.910 20 Si 0.952 3.048 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.156 0.844 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 11.523 1.856 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.232 4.232 3 C -0.098 4.098 4 C -0.138 4.138 5 C 0.033 3.967 6 F -0.128 7.128 7 C -0.156 4.156 8 C -0.115 4.115 9 C -0.041 4.041 10 N -0.181 5.181 11 H 0.259 0.741 12 C 0.023 3.977 13 C 0.073 3.927 14 H 0.051 0.949 15 C -0.183 4.183 16 C -0.568 4.568 17 H 0.067 0.933 18 C -0.176 4.176 19 N -0.548 5.548 20 Si 0.778 3.222 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.203 1.203 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.157 0.843 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.959 11.280 1.895 12.467 hybrid contribution 0.343 -0.865 -0.783 1.217 sum 5.302 10.415 1.111 11.740 Atomic orbital electron populations 1.20001 0.88930 1.01928 1.01351 1.20263 0.96157 0.89952 1.16833 1.18997 0.92750 0.92623 1.05469 1.20432 0.99261 0.90774 1.03372 1.17390 0.94379 0.76782 1.08132 1.91440 1.95759 1.30929 1.94648 1.20936 0.95481 0.95437 1.03735 1.20127 0.97608 0.90834 1.02900 1.18654 0.95971 0.83789 1.05662 1.41741 1.07624 1.04681 1.64070 0.74111 1.20884 0.82716 0.96825 0.97228 1.17537 0.96126 0.84222 0.94777 0.94872 1.21636 0.98630 1.02390 0.95629 1.21190 1.32982 0.95918 1.06668 0.93271 1.25601 0.95058 0.98009 0.98965 1.69966 1.37553 1.10743 1.36543 0.85699 0.78875 0.77518 0.80081 1.19574 1.20817 1.20266 0.92526 0.92600 0.90811 0.84324 0.81858 0.82612 0.94950 0.95499 0.91503 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.23 10.01 71.24 0.71 -1.52 16 2 C -0.23 -8.87 6.31 -18.63 -0.12 -8.99 16 3 C -0.09 -3.32 6.35 -20.20 -0.13 -3.45 16 4 C -0.12 -3.70 10.07 22.51 0.23 -3.47 16 5 C 0.05 1.51 7.29 22.36 0.16 1.67 16 6 F -0.15 -4.10 17.26 44.97 0.78 -3.33 16 7 C -0.14 -3.31 9.99 22.34 0.22 -3.08 16 8 C -0.09 -2.44 10.06 22.35 0.22 -2.22 16 9 C 0.07 2.24 7.27 38.99 0.28 2.52 16 10 N -0.58 -21.09 6.08 -175.89 -1.07 -22.15 16 11 H 0.42 13.89 8.96 -92.71 -0.83 13.06 16 12 C 0.13 5.58 5.52 40.87 0.23 5.81 16 13 C 0.09 4.39 2.63 -12.29 -0.03 4.36 16 14 H 0.03 1.72 6.67 -2.39 -0.02 1.71 16 15 C -0.12 -5.66 8.95 71.98 0.64 -5.01 16 16 C -0.53 -27.33 8.55 25.60 0.22 -27.11 16 17 H 0.05 2.55 7.74 -2.91 -0.02 2.52 16 18 C 0.02 1.24 5.30 84.66 0.45 1.68 16 19 N -0.91 -49.30 11.32 21.45 0.24 -49.05 16 20 Si 0.95 41.55 29.54 68.60 2.03 43.57 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.06 1.99 7.06 -2.39 -0.02 1.97 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.14 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 3.36 6.07 -2.39 -0.01 3.34 16 33 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -57.05 285.38 5.37 -51.67 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.30 Total: 18.10 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.09 Total: -38.81 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -0.83 Total: -71.21 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.33 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -57.05 5.37 -51.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519450.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.555 kcal (2) G-P(sol) polarization free energy of solvation -57.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds