Wall clock time and date at job start Mon Mar 30 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46485 * 126.49828 * 2 1 4 4 C 1.39669 * 133.97171 * 359.89161 * 3 2 1 5 5 C 1.37796 * 119.63112 * 180.33192 * 4 3 2 6 6 F 1.35098 * 119.83310 * 180.02562 * 5 4 3 7 7 C 1.39030 * 120.33000 * 0.05146 * 5 4 3 8 8 C 1.37717 * 120.65255 * 359.97438 * 7 5 4 9 9 C 1.39092 * 119.94884 * 359.97438 * 8 7 5 10 10 N 1.37820 * 133.39379 * 179.97438 * 9 8 7 11 11 H 0.96993 * 125.07116 * 359.97438 * 10 9 8 12 12 C 1.34245 * 126.49530 * 179.83735 * 2 1 3 13 13 C 1.50700 * 125.02948 * 359.97438 * 12 2 1 14 14 H 1.08994 * 109.47551 * 359.71948 * 13 12 2 15 15 C 1.52996 * 109.47211 * 119.72446 * 13 12 2 16 16 C 1.50702 * 109.46869 * 239.72002 * 13 12 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 13 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 13 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.09001 * 109.46976 * 270.16692 * 1 2 3 25 25 H 1.09000 * 109.47077 * 30.16136 * 1 2 3 26 26 H 1.08998 * 109.47461 * 150.16695 * 1 2 3 27 27 H 1.08005 * 120.18726 * 0.38309 * 4 3 2 28 28 H 1.08000 * 119.67367 * 179.97438 * 7 5 4 29 29 H 1.07995 * 120.02471 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47094 * 179.97438 * 15 13 12 31 31 H 1.09003 * 109.46851 * 299.99806 * 15 13 12 32 32 H 1.09003 * 109.47532 * 59.99881 * 15 13 12 33 33 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1471 2.5550 -0.0019 5 6 3.2155 3.4252 -0.0082 6 9 2.9965 4.7583 -0.0095 7 6 4.5177 2.9380 -0.0137 8 6 4.7602 1.5824 -0.0125 9 6 3.6961 0.6866 -0.0051 10 7 3.6168 -0.6893 -0.0025 11 1 4.3772 -1.2914 -0.0062 12 6 2.3054 -1.0792 0.0031 13 6 1.8279 -2.5085 0.0077 14 1 0.7381 -2.5275 0.0132 15 6 2.3442 -3.2228 -1.2430 16 6 2.3487 -3.2081 1.2367 17 1 2.9636 -2.6713 1.9439 18 6 2.0349 -4.5319 1.4614 19 7 2.4849 -5.1409 2.5367 20 14 0.9709 -5.4602 0.2385 21 1 1.8359 -6.0970 -0.7868 22 1 0.1957 -6.5070 0.9517 23 1 0.0352 -4.5145 -0.4213 24 1 -0.3633 0.0030 1.0277 25 1 -0.3633 0.8885 -0.5163 26 1 -0.3634 -0.8914 -0.5112 27 1 1.1365 2.9360 0.0024 28 1 5.3472 3.6296 -0.0190 29 1 5.7758 1.2151 -0.0172 30 1 1.9991 -4.2567 -1.2394 31 1 1.9675 -2.7167 -2.1319 32 1 3.4340 -3.2039 -1.2484 33 1 2.2645 -6.0722 2.6946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259519452.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:14 Heat of formation + Delta-G solvation = -2.746659 kcal Electronic energy + Delta-G solvation = -17383.128810 eV Core-core repulsion = 14516.150870 eV Total energy + Delta-G solvation = -2866.977940 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.54538 -40.93571 -36.73529 -34.11446 -32.64183 -31.45852 -29.73540 -28.13799 -26.02588 -25.24264 -23.16396 -21.78891 -20.45234 -18.59341 -17.38061 -17.13254 -16.52068 -15.70422 -15.30846 -15.06033 -14.39323 -13.95916 -13.81204 -13.49462 -12.92678 -12.81380 -12.54194 -12.38706 -12.34572 -12.06461 -11.72855 -11.45378 -11.15290 -10.81557 -10.60999 -10.35751 -10.23974 -9.57826 -9.38298 -9.23986 -8.74291 -7.65974 -7.11505 -6.25009 -4.27903 1.30424 1.71216 3.14253 3.21739 3.25640 3.28716 3.61352 4.01190 4.24370 4.55344 4.88898 5.07549 5.12109 5.34247 5.49855 5.60807 5.74770 5.97492 6.04172 6.12152 6.18368 6.22038 6.29215 6.36551 6.39429 6.42500 6.47153 6.69745 6.80028 6.93485 7.10191 7.31160 7.48832 7.66566 8.03538 8.29851 8.76077 9.34087 10.87356 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.040513 B = 0.005803 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.977905 B = 4824.094323 C = 5090.924751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.214 4.214 3 C -0.068 4.068 4 C -0.112 4.112 5 C 0.058 3.942 6 F -0.151 7.151 7 C -0.148 4.148 8 C -0.097 4.097 9 C 0.080 3.920 10 N -0.578 5.578 11 H 0.418 0.582 12 C 0.167 3.833 13 C 0.056 3.944 14 H 0.058 0.942 15 C -0.148 4.148 16 C -0.521 4.521 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.264 1.264 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 10.674 -6.935 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.219 4.219 3 C -0.073 4.073 4 C -0.131 4.131 5 C 0.038 3.962 6 F -0.130 7.130 7 C -0.168 4.168 8 C -0.118 4.118 9 C -0.028 4.028 10 N -0.179 5.179 11 H 0.256 0.744 12 C 0.058 3.942 13 C 0.036 3.964 14 H 0.076 0.924 15 C -0.206 4.206 16 C -0.559 4.559 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.189 1.189 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.973 10.439 -6.819 12.507 hybrid contribution -0.025 -0.686 -0.442 0.816 sum 0.948 9.753 -7.261 12.196 Atomic orbital electron populations 1.19995 0.89856 1.01257 1.01378 1.19876 0.95118 0.89491 1.17452 1.18833 0.92428 0.92138 1.03935 1.20292 0.98159 0.91306 1.03386 1.17223 0.93861 0.76805 1.08318 1.91431 1.95697 1.31147 1.94684 1.20551 0.95154 0.95136 1.05915 1.19771 0.96925 0.91114 1.03974 1.18258 0.95209 0.83978 1.05335 1.41801 1.08197 1.04177 1.63749 0.74399 1.20645 0.81638 0.96651 0.95306 1.18208 0.97643 0.85177 0.95335 0.92429 1.22172 1.01003 0.99813 0.97572 1.20823 1.33651 0.95976 1.05477 0.90642 1.24974 0.95210 0.97363 0.95213 1.69876 1.44794 1.11935 1.26316 0.86842 0.80920 0.79740 0.80755 1.20467 1.22197 1.18867 0.92263 0.92834 0.91944 0.85371 0.85179 0.85660 0.93435 0.94532 0.93127 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.08 10.00 36.01 0.36 -0.72 16 2 C -0.21 -4.00 6.31 -102.71 -0.65 -4.65 16 3 C -0.07 -1.21 6.35 -105.14 -0.67 -1.87 16 4 C -0.11 -1.78 10.07 -39.21 -0.40 -2.18 16 5 C 0.06 0.88 7.29 -39.45 -0.29 0.60 16 6 F -0.15 -2.24 17.26 2.25 0.04 -2.21 16 7 C -0.15 -2.03 9.99 -39.48 -0.39 -2.43 16 8 C -0.10 -1.39 10.06 -39.46 -0.40 -1.78 16 9 C 0.08 1.37 7.27 -83.95 -0.61 0.76 16 10 N -0.58 -10.38 6.08 -6.94 -0.04 -10.43 16 11 H 0.42 6.87 8.96 -40.82 -0.37 6.50 16 12 C 0.17 3.33 5.53 -81.78 -0.45 2.88 16 13 C 0.06 1.21 2.22 -92.92 -0.21 1.01 16 14 H 0.06 1.27 5.72 -51.93 -0.30 0.97 16 15 C -0.15 -2.93 8.66 37.16 0.32 -2.61 16 16 C -0.52 -13.56 9.13 -34.44 -0.31 -13.88 16 17 H 0.08 2.17 7.98 -52.49 -0.42 1.75 16 18 C 0.08 2.04 5.45 -17.82 -0.10 1.94 16 19 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 20 Si 0.89 20.45 24.37 -169.99 -4.14 16.31 16 21 H -0.28 -6.23 6.87 56.52 0.39 -5.84 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.26 -5.74 6.52 56.52 0.37 -5.37 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.98 7.07 -51.93 -0.37 0.61 16 27 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.05 0.98 3.29 -51.93 -0.17 0.81 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 278.58 15.07 4.20 4.20 Total: -1.00 -28.59 278.58 -6.72 -35.31 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.76 Total: 4.87 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: -3.79 Total: -22.94 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.73 Total: -35.55 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.14 Total: 16.31 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.59 -6.72 -35.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519452.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.564 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds