Wall clock time and date at job start Mon Mar 30 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46485 * 126.49828 * 2 1 4 4 C 1.39669 * 133.97171 * 359.89161 * 3 2 1 5 5 C 1.37796 * 119.63112 * 180.33192 * 4 3 2 6 6 F 1.35098 * 119.83310 * 180.02562 * 5 4 3 7 7 C 1.39030 * 120.33000 * 0.05146 * 5 4 3 8 8 C 1.37717 * 120.65255 * 359.97438 * 7 5 4 9 9 C 1.39092 * 119.94884 * 359.97438 * 8 7 5 10 10 N 1.37820 * 133.39379 * 179.97438 * 9 8 7 11 11 H 0.96993 * 125.07116 * 359.97438 * 10 9 8 12 12 C 1.34245 * 126.49530 * 179.83735 * 2 1 3 13 13 C 1.50700 * 125.02948 * 359.97438 * 12 2 1 14 14 H 1.08994 * 109.47551 * 359.71948 * 13 12 2 15 15 C 1.52996 * 109.47211 * 119.72446 * 13 12 2 16 16 C 1.50702 * 109.46869 * 239.72002 * 13 12 2 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 13 12 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 13 12 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 13 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 13 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.09001 * 109.46976 * 270.16692 * 1 2 3 25 25 H 1.09000 * 109.47077 * 30.16136 * 1 2 3 26 26 H 1.08998 * 109.47461 * 150.16695 * 1 2 3 27 27 H 1.08005 * 120.18726 * 0.38309 * 4 3 2 28 28 H 1.08000 * 119.67367 * 179.97438 * 7 5 4 29 29 H 1.07995 * 120.02471 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.47094 * 179.97438 * 15 13 12 31 31 H 1.09003 * 109.46851 * 299.99806 * 15 13 12 32 32 H 1.09003 * 109.47532 * 59.99881 * 15 13 12 33 33 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1776 0.0000 4 6 2.1471 2.5550 -0.0019 5 6 3.2155 3.4252 -0.0082 6 9 2.9965 4.7583 -0.0095 7 6 4.5177 2.9380 -0.0137 8 6 4.7602 1.5824 -0.0125 9 6 3.6961 0.6866 -0.0051 10 7 3.6168 -0.6893 -0.0025 11 1 4.3772 -1.2914 -0.0062 12 6 2.3054 -1.0792 0.0031 13 6 1.8279 -2.5085 0.0077 14 1 0.7381 -2.5275 0.0132 15 6 2.3442 -3.2228 -1.2430 16 6 2.3487 -3.2081 1.2367 17 1 2.9636 -2.6713 1.9439 18 6 2.0349 -4.5319 1.4614 19 7 2.4849 -5.1409 2.5367 20 14 0.9709 -5.4602 0.2385 21 1 1.8359 -6.0970 -0.7868 22 1 0.1957 -6.5070 0.9517 23 1 0.0352 -4.5145 -0.4213 24 1 -0.3633 0.0030 1.0277 25 1 -0.3633 0.8885 -0.5163 26 1 -0.3634 -0.8914 -0.5112 27 1 1.1365 2.9360 0.0024 28 1 5.3472 3.6296 -0.0190 29 1 5.7758 1.2151 -0.0172 30 1 1.9991 -4.2567 -1.2394 31 1 1.9675 -2.7167 -2.1319 32 1 3.4340 -3.2039 -1.2484 33 1 2.2645 -6.0722 2.6946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259519452.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:14 Heat of formation + Delta-G solvation = -18.881442 kcal Electronic energy + Delta-G solvation = -17383.828467 eV Core-core repulsion = 14516.150870 eV Total energy + Delta-G solvation = -2867.677596 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.72088 -42.25301 -38.05260 -35.82172 -34.01497 -33.28458 -30.96182 -29.42980 -27.36843 -27.10747 -24.61376 -23.05497 -21.90432 -19.97816 -18.92804 -18.62933 -17.99384 -17.14102 -16.59733 -16.47079 -15.76742 -15.36275 -15.26738 -14.84720 -14.71695 -14.10304 -13.99408 -13.78904 -13.61890 -13.35753 -13.16097 -13.08616 -12.72756 -12.29540 -12.02579 -11.97902 -11.69441 -11.30622 -11.23601 -10.77061 -10.50638 -8.95057 -8.45111 -8.32214 -6.38910 0.08613 0.49205 1.32719 1.39377 1.49162 1.80514 2.28798 2.32079 2.78399 3.04183 3.34605 3.71519 3.93230 4.08748 4.27309 4.34237 4.41051 4.51446 4.65045 4.80317 4.85222 4.89745 4.91635 4.97139 5.10838 5.15592 5.21460 5.27059 5.38706 5.47565 5.55033 5.86001 5.99818 6.21711 6.27236 6.63675 6.74839 7.26822 8.83809 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.040513 B = 0.005803 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.977905 B = 4824.094323 C = 5090.924751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.216 4.216 3 C -0.094 4.094 4 C -0.116 4.116 5 C 0.053 3.947 6 F -0.148 7.148 7 C -0.135 4.135 8 C -0.096 4.096 9 C 0.068 3.932 10 N -0.580 5.580 11 H 0.420 0.580 12 C 0.133 3.867 13 C 0.060 3.940 14 H 0.057 0.943 15 C -0.145 4.145 16 C -0.516 4.516 17 H 0.032 0.968 18 C 0.018 3.982 19 N -0.945 5.945 20 Si 0.948 3.052 21 H -0.265 1.265 22 H -0.301 1.301 23 H -0.240 1.240 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.142 0.858 28 H 0.163 0.837 29 H 0.154 0.846 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 12.144 -8.767 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.223 4.223 3 C -0.100 4.100 4 C -0.136 4.136 5 C 0.033 3.967 6 F -0.127 7.127 7 C -0.155 4.155 8 C -0.117 4.117 9 C -0.040 4.040 10 N -0.182 5.182 11 H 0.258 0.742 12 C 0.024 3.976 13 C 0.041 3.959 14 H 0.075 0.925 15 C -0.202 4.202 16 C -0.554 4.554 17 H 0.050 0.950 18 C -0.179 4.179 19 N -0.585 5.585 20 Si 0.774 3.226 21 H -0.191 1.191 22 H -0.229 1.229 23 H -0.164 1.164 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.181 0.819 29 H 0.172 0.828 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.902 11.936 -8.671 14.781 hybrid contribution 0.085 -0.941 0.192 0.964 sum 0.987 10.995 -8.479 13.920 Atomic orbital electron populations 1.20075 0.88452 1.02511 1.01612 1.20279 0.96333 0.89681 1.15965 1.18994 0.92648 0.92712 1.05597 1.20446 0.99314 0.90715 1.03095 1.17391 0.94365 0.76835 1.08105 1.91441 1.95744 1.30916 1.94637 1.20940 0.95585 0.95392 1.03576 1.20129 0.97637 0.90920 1.02981 1.18649 0.96085 0.83712 1.05564 1.41752 1.07704 1.04780 1.63941 0.74160 1.20434 0.82810 0.96002 0.98401 1.18032 0.97428 0.86361 0.94125 0.92476 1.22088 1.01341 0.99238 0.97531 1.21022 1.32277 0.95884 1.06224 0.94996 1.25826 0.96697 0.98439 0.96987 1.70033 1.47178 1.12396 1.28854 0.85861 0.79603 0.78504 0.78603 1.19055 1.22906 1.16372 0.92470 0.90550 0.91718 0.84052 0.81930 0.82815 0.94119 0.91815 0.92793 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.13 10.00 71.24 0.71 -1.42 16 2 C -0.22 -7.94 6.31 -18.63 -0.12 -8.06 16 3 C -0.09 -3.24 6.35 -20.20 -0.13 -3.36 16 4 C -0.12 -3.48 10.07 22.51 0.23 -3.25 16 5 C 0.05 1.47 7.29 22.36 0.16 1.64 16 6 F -0.15 -4.01 17.26 44.97 0.78 -3.24 16 7 C -0.14 -3.26 9.99 22.34 0.22 -3.04 16 8 C -0.10 -2.49 10.06 22.35 0.22 -2.27 16 9 C 0.07 2.23 7.27 38.99 0.28 2.51 16 10 N -0.58 -20.72 6.08 -175.88 -1.07 -21.78 16 11 H 0.42 13.91 8.96 -92.71 -0.83 13.08 16 12 C 0.13 5.27 5.53 40.87 0.23 5.50 16 13 C 0.06 2.58 2.22 -12.29 -0.03 2.55 16 14 H 0.06 2.45 5.72 -2.39 -0.01 2.44 16 15 C -0.14 -5.47 8.66 71.98 0.62 -4.85 16 16 C -0.52 -27.55 9.13 25.60 0.23 -27.31 16 17 H 0.03 1.93 7.98 -2.91 -0.02 1.90 16 18 C 0.02 1.01 5.45 84.66 0.46 1.48 16 19 N -0.95 -56.74 13.96 21.45 0.30 -56.44 16 20 Si 0.95 41.90 24.37 68.60 1.67 43.57 16 21 H -0.26 -11.07 6.87 99.48 0.68 -10.38 16 22 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.24 -9.61 6.52 99.48 0.65 -8.96 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.06 1.93 7.07 -2.39 -0.02 1.91 16 27 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 28 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 29 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.04 1.58 3.29 -2.39 -0.01 1.57 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -62.59 278.58 5.01 -57.58 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.23 Total: 20.20 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 3.10 Total: -39.89 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -0.77 Total: -78.22 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.24 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.67 Total: 43.57 kcal Total: -62.59 5.01 -57.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259519452.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.698 kcal (2) G-P(sol) polarization free energy of solvation -62.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds