Wall clock time and date at job start Mon Mar 30 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38081 * 119.86176 * 0.02562 * 3 2 1 5 5 C 1.39630 * 119.60245 * 180.02562 * 4 3 2 6 6 C 1.46496 * 133.94545 * 179.97438 * 5 4 3 7 7 C 1.34236 * 107.02523 * 179.97438 * 6 5 4 8 8 N 1.36813 * 109.94483 * 0.02562 * 7 6 5 9 9 H 0.97000 * 125.06867 * 179.97438 * 8 7 6 10 10 C 1.37898 * 109.85211 * 359.97438 * 8 7 6 11 11 C 1.39057 * 133.36809 * 180.02562 * 10 8 7 12 12 C 1.37725 * 119.99766 * 179.72300 * 11 10 8 13 13 C 1.50700 * 119.69004 * 180.29306 * 12 11 10 14 14 H 1.08996 * 109.47051 * 215.26061 * 13 12 11 15 15 O 1.42897 * 109.47350 * 335.26030 * 13 12 11 16 16 C 1.50699 * 109.46816 * 95.25876 * 13 12 11 17 17 H 1.07991 * 120.00178 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99640 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00071 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 119.99868 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47255 * 89.99931 * 20 18 16 22 22 H 1.48505 * 109.47226 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47149 * 329.99969 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 27 27 H 1.08000 * 120.20065 * 0.02562 * 4 3 2 28 28 H 1.08000 * 126.48870 * 0.02562 * 6 5 4 29 29 H 1.08004 * 125.03041 * 179.97438 * 7 6 5 30 30 H 1.08004 * 119.99623 * 359.97438 * 11 10 8 31 31 H 0.96701 * 114.00374 * 59.99234 * 15 13 12 32 32 H 0.97000 * 119.99641 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2917 2.3679 0.0005 5 6 1.9313 3.6091 0.0000 6 6 1.4594 4.9960 -0.0002 7 6 2.5479 5.7815 -0.0002 8 7 3.6790 5.0118 -0.0006 9 1 4.5864 5.3545 -0.0011 10 6 3.3364 3.6760 -0.0003 11 6 4.0783 2.4999 -0.0001 12 6 3.4369 1.2812 0.0060 13 6 4.2478 0.0110 0.0129 14 1 3.7363 -0.7498 -0.5767 15 8 5.5357 0.2649 -0.5517 16 6 4.4077 -0.4751 1.4303 17 1 3.9660 0.0799 2.2446 18 6 5.1172 -1.6291 1.6874 19 7 5.6547 -2.3053 0.6957 20 14 5.3148 -2.2321 3.4443 21 1 4.1919 -3.1423 3.7846 22 1 6.6012 -2.9625 3.5752 23 1 5.3086 -1.0708 4.3698 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2131 2.3126 0.0014 28 1 0.4305 5.3243 0.0005 29 1 2.5331 6.8615 -0.0007 30 1 5.1575 2.5423 -0.0006 31 1 6.0485 0.9334 -0.0771 32 1 6.1534 -3.1174 0.8766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259541130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:12 Heat of formation + Delta-G solvation = -25.764833 kcal Electronic energy + Delta-G solvation = -17711.885287 eV Core-core repulsion = 14831.536415 eV Total energy + Delta-G solvation = -2880.348872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78769 -38.73096 -36.36573 -34.33960 -32.09478 -31.32014 -29.31874 -28.24171 -26.78825 -26.05390 -23.09633 -21.58904 -20.37366 -20.06976 -17.72403 -17.07278 -16.88436 -15.73411 -15.08434 -14.82736 -14.51196 -14.02443 -13.92489 -13.58469 -13.11439 -13.01188 -12.57631 -12.16726 -12.07219 -11.65179 -11.27290 -11.06119 -10.88528 -10.83751 -10.40115 -10.18381 -9.87250 -9.31545 -9.05402 -8.53915 -8.27438 -7.24878 -7.04880 -5.93508 -4.10741 1.62251 2.25939 3.07583 3.32720 3.38940 3.42628 3.48352 3.97777 4.38728 4.53572 5.02805 5.22173 5.31267 5.46804 5.55637 5.57187 5.67494 5.81366 5.87273 5.96672 6.19587 6.30455 6.44688 6.55183 6.72574 6.95164 7.15585 7.17542 7.47690 7.81660 7.88400 7.92623 8.15119 8.21862 8.90161 9.37566 9.62675 11.09855 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.007409 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.704260 B = 3778.198464 C = 4294.836283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.297 6.297 3 C 0.116 3.884 4 C -0.183 4.183 5 C -0.092 4.092 6 C -0.215 4.215 7 C 0.041 3.959 8 N -0.599 5.599 9 H 0.411 0.589 10 C 0.068 3.932 11 C -0.103 4.103 12 C -0.068 4.068 13 C 0.267 3.733 14 H 0.077 0.923 15 O -0.561 6.561 16 C -0.551 4.551 17 H 0.056 0.944 18 C 0.079 3.921 19 N -0.861 5.861 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.093 0.907 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.120 0.880 28 H 0.138 0.862 29 H 0.162 0.838 30 H 0.124 0.876 31 H 0.343 0.657 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 12.462 -1.262 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.209 6.209 3 C 0.070 3.930 4 C -0.203 4.203 5 C -0.097 4.097 6 C -0.241 4.241 7 C -0.086 4.086 8 N -0.202 5.202 9 H 0.247 0.753 10 C -0.037 4.037 11 C -0.124 4.124 12 C -0.070 4.070 13 C 0.210 3.790 14 H 0.094 0.906 15 O -0.364 6.364 16 C -0.589 4.589 17 H 0.074 0.926 18 C -0.127 4.127 19 N -0.497 5.497 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.138 0.862 28 H 0.155 0.845 29 H 0.180 0.820 30 H 0.142 0.858 31 H 0.187 0.813 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.239 11.693 -1.754 13.863 hybrid contribution 0.288 0.465 1.479 1.577 sum -6.950 12.158 -0.275 14.007 Atomic orbital electron populations 1.22939 0.80173 1.03155 1.00399 1.86272 1.19622 1.26343 1.88693 1.18544 0.91692 0.83728 0.98997 1.20350 0.98809 0.90470 1.10630 1.18755 0.91917 0.92789 1.06190 1.21527 0.97782 0.90870 1.13893 1.21619 0.85444 0.96343 1.05189 1.41705 1.08018 1.04328 1.66177 0.75332 1.18197 0.94146 0.84275 1.07108 1.19551 0.99048 0.88333 1.05459 1.20521 0.91368 0.97725 0.97424 1.18365 0.79537 0.86612 0.94517 0.90589 1.86634 1.30592 1.62391 1.56752 1.21459 1.35623 1.09639 0.92188 0.92606 1.25019 0.94831 0.95984 0.96836 1.70078 1.33135 1.15878 1.30625 0.86647 0.77472 0.78965 0.85154 1.20507 1.21163 1.19877 0.88846 0.93509 0.93338 0.86214 0.84466 0.82034 0.85810 0.81255 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.23 9.60 -19.71 -0.19 -6.42 16 3 C 0.12 2.48 6.65 -39.28 -0.26 2.21 16 4 C -0.18 -3.38 9.08 -39.12 -0.36 -3.74 16 5 C -0.09 -1.66 6.37 -105.14 -0.67 -2.33 16 6 C -0.21 -3.08 11.08 -37.67 -0.42 -3.50 16 7 C 0.04 0.50 11.81 -16.74 -0.20 0.30 16 8 N -0.60 -8.18 6.08 -10.62 -0.06 -8.24 16 9 H 0.41 4.28 8.96 -40.82 -0.37 3.92 16 10 C 0.07 1.22 7.27 -83.92 -0.61 0.61 16 11 C -0.10 -2.07 9.31 -39.47 -0.37 -2.43 16 12 C -0.07 -1.56 5.02 -104.45 -0.52 -2.08 16 13 C 0.27 7.09 2.77 -29.04 -0.08 7.01 16 14 H 0.08 2.24 7.66 -51.93 -0.40 1.85 16 15 O -0.56 -14.69 12.37 -35.23 -0.44 -15.13 16 16 C -0.55 -15.60 8.75 -34.44 -0.30 -15.90 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 18 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 19 N -0.86 -25.76 12.84 55.43 0.71 -25.05 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 26 H 0.05 0.65 7.65 -51.93 -0.40 0.25 16 27 H 0.12 1.87 6.28 -52.49 -0.33 1.54 16 28 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.12 2.26 6.36 -52.48 -0.33 1.93 16 31 H 0.34 7.82 7.29 45.56 0.33 8.15 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 277.22 15.07 4.18 4.18 Total: -1.00 -33.98 277.22 -6.41 -40.39 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -2.70 Total: 9.91 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -2.89 Total: -16.27 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.65 Total: -33.29 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.62 Total: -21.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.98 -6.41 -40.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259541130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.621 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds