Wall clock time and date at job start Mon Mar 30 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38081 * 119.86176 * 0.02562 * 3 2 1 5 5 C 1.39630 * 119.60245 * 180.02562 * 4 3 2 6 6 C 1.46496 * 133.94545 * 179.97438 * 5 4 3 7 7 C 1.34236 * 107.02523 * 179.97438 * 6 5 4 8 8 N 1.36813 * 109.94483 * 0.02562 * 7 6 5 9 9 H 0.97000 * 125.06867 * 179.97438 * 8 7 6 10 10 C 1.37898 * 109.85211 * 359.97438 * 8 7 6 11 11 C 1.39057 * 133.36809 * 180.02562 * 10 8 7 12 12 C 1.37725 * 119.99766 * 179.72300 * 11 10 8 13 13 C 1.50700 * 119.69004 * 180.29306 * 12 11 10 14 14 H 1.08996 * 109.47051 * 215.26061 * 13 12 11 15 15 O 1.42897 * 109.47350 * 335.26030 * 13 12 11 16 16 C 1.50699 * 109.46816 * 95.25876 * 13 12 11 17 17 H 1.07991 * 120.00178 * 0.02562 * 16 13 12 18 18 C 1.37883 * 119.99640 * 179.97438 * 16 13 12 19 19 N 1.31513 * 120.00071 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 119.99868 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47255 * 89.99931 * 20 18 16 22 22 H 1.48505 * 109.47226 * 210.00056 * 20 18 16 23 23 H 1.48498 * 109.47149 * 329.99969 * 20 18 16 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 27 27 H 1.08000 * 120.20065 * 0.02562 * 4 3 2 28 28 H 1.08000 * 126.48870 * 0.02562 * 6 5 4 29 29 H 1.08004 * 125.03041 * 179.97438 * 7 6 5 30 30 H 1.08004 * 119.99623 * 359.97438 * 11 10 8 31 31 H 0.96701 * 114.00374 * 59.99234 * 15 13 12 32 32 H 0.97000 * 119.99641 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2917 2.3679 0.0005 5 6 1.9313 3.6091 0.0000 6 6 1.4594 4.9960 -0.0002 7 6 2.5479 5.7815 -0.0002 8 7 3.6790 5.0118 -0.0006 9 1 4.5864 5.3545 -0.0011 10 6 3.3364 3.6760 -0.0003 11 6 4.0783 2.4999 -0.0001 12 6 3.4369 1.2812 0.0060 13 6 4.2478 0.0110 0.0129 14 1 3.7363 -0.7498 -0.5767 15 8 5.5357 0.2649 -0.5517 16 6 4.4077 -0.4751 1.4303 17 1 3.9660 0.0799 2.2446 18 6 5.1172 -1.6291 1.6874 19 7 5.6547 -2.3053 0.6957 20 14 5.3148 -2.2321 3.4443 21 1 4.1919 -3.1423 3.7846 22 1 6.6012 -2.9625 3.5752 23 1 5.3086 -1.0708 4.3698 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 0.2131 2.3126 0.0014 28 1 0.4305 5.3243 0.0005 29 1 2.5331 6.8615 -0.0007 30 1 5.1575 2.5423 -0.0006 31 1 6.0485 0.9334 -0.0771 32 1 6.1534 -3.1174 0.8766 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259541130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:12 Heat of formation + Delta-G solvation = -51.195309 kcal Electronic energy + Delta-G solvation = -17712.988035 eV Core-core repulsion = 14831.536415 eV Total energy + Delta-G solvation = -2881.451620 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06694 -40.13366 -38.16794 -35.94769 -34.27581 -32.68105 -30.83562 -29.57752 -28.37494 -27.62056 -24.92504 -23.02394 -21.75308 -21.41476 -19.20212 -18.87648 -18.41200 -17.25759 -16.69991 -16.46348 -16.28358 -15.66910 -15.15154 -15.06394 -14.85171 -14.18471 -14.11860 -13.76440 -13.37909 -13.32657 -13.07421 -12.81424 -12.62335 -12.48706 -12.09909 -11.83846 -11.34438 -11.10558 -10.74434 -10.50200 -10.29274 -8.67005 -8.39635 -8.08276 -6.36045 0.24237 0.79441 1.38957 1.40222 1.51218 1.94387 2.36721 2.40994 2.65633 2.99672 3.12950 3.83495 3.99180 4.19128 4.29914 4.38928 4.45716 4.49269 4.57094 4.72178 4.73274 4.86458 5.06681 5.16925 5.21808 5.45311 5.63367 5.69528 5.90642 5.96080 6.07792 6.18970 6.72145 6.74290 6.86135 7.31569 7.50192 8.93147 Molecular weight = 247.10amu Principal moments of inertia in cm(-1) A = 0.024222 B = 0.007409 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.704260 B = 3778.198464 C = 4294.836283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.094 3.906 4 C -0.180 4.180 5 C -0.105 4.105 6 C -0.237 4.237 7 C 0.074 3.926 8 N -0.589 5.589 9 H 0.427 0.573 10 C 0.049 3.951 11 C -0.101 4.101 12 C -0.113 4.113 13 C 0.276 3.724 14 H 0.029 0.971 15 O -0.575 6.575 16 C -0.561 4.561 17 H 0.048 0.952 18 C 0.026 3.974 19 N -0.900 5.900 20 Si 0.960 3.040 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.267 1.267 24 H 0.109 0.891 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.146 0.854 28 H 0.164 0.836 29 H 0.218 0.782 30 H 0.130 0.870 31 H 0.356 0.644 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.314 15.506 -0.274 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.048 3.952 4 C -0.199 4.199 5 C -0.110 4.110 6 C -0.262 4.262 7 C -0.054 4.054 8 N -0.194 5.194 9 H 0.266 0.734 10 C -0.057 4.057 11 C -0.122 4.122 12 C -0.115 4.115 13 C 0.219 3.781 14 H 0.047 0.953 15 O -0.380 6.380 16 C -0.599 4.599 17 H 0.066 0.934 18 C -0.176 4.176 19 N -0.538 5.538 20 Si 0.785 3.215 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.191 1.191 24 H 0.127 0.873 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.164 0.836 28 H 0.182 0.818 29 H 0.234 0.766 30 H 0.148 0.852 31 H 0.202 0.798 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.219 14.765 -0.762 16.915 hybrid contribution 0.537 -0.287 1.108 1.265 sum -7.682 14.477 0.346 16.393 Atomic orbital electron populations 1.23250 0.77420 1.04820 1.01894 1.86204 1.22721 1.27077 1.89050 1.18685 0.91504 0.84740 1.00285 1.20582 0.99951 0.89869 1.09509 1.19329 0.92314 0.94387 1.04930 1.21904 0.99994 0.88865 1.15476 1.22512 0.83832 0.98450 1.00558 1.41816 1.09716 1.02753 1.65072 0.73391 1.18156 0.94294 0.85510 1.07723 1.19571 0.99446 0.88553 1.04588 1.20186 0.92204 0.96935 1.02147 1.17889 0.79648 0.87901 0.92671 0.95328 1.86543 1.31137 1.63171 1.57163 1.21695 1.35341 1.09870 0.92975 0.93420 1.25882 0.94402 0.96032 1.01245 1.70212 1.34124 1.16441 1.32993 0.85551 0.77705 0.78508 0.79768 1.19925 1.20278 1.19118 0.87268 0.91627 0.92006 0.83629 0.81837 0.76596 0.85250 0.79825 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.81 113.37 1.11 1.72 16 2 O -0.34 -14.82 9.60 -93.45 -0.90 -15.72 16 3 C 0.09 4.13 6.65 22.47 0.15 4.28 16 4 C -0.18 -6.53 9.08 22.57 0.20 -6.32 16 5 C -0.10 -3.56 6.37 -20.20 -0.13 -3.68 16 6 C -0.24 -5.80 11.08 23.51 0.26 -5.54 16 7 C 0.07 1.39 11.81 83.00 0.98 2.38 16 8 N -0.59 -13.91 6.08 -187.53 -1.14 -15.05 16 9 H 0.43 7.30 8.96 -92.71 -0.83 6.47 16 10 C 0.05 1.70 7.27 38.98 0.28 1.98 16 11 C -0.10 -4.11 9.31 22.34 0.21 -3.90 16 12 C -0.11 -5.40 5.02 -19.75 -0.10 -5.50 16 13 C 0.28 15.61 2.77 29.10 0.08 15.69 16 14 H 0.03 1.86 7.66 -2.39 -0.02 1.84 16 15 O -0.58 -31.80 12.37 -148.98 -1.84 -33.64 16 16 C -0.56 -33.13 8.75 25.60 0.22 -32.91 16 17 H 0.05 2.82 7.74 -2.92 -0.02 2.80 16 18 C 0.03 1.54 5.40 84.66 0.46 2.00 16 19 N -0.90 -55.86 12.84 21.45 0.28 -55.58 16 20 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 25 H 0.07 1.64 7.65 -2.39 -0.02 1.63 16 26 H 0.06 1.62 7.65 -2.38 -0.02 1.60 16 27 H 0.15 4.31 6.28 -2.91 -0.02 4.29 16 28 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.22 1.75 8.06 -2.91 -0.02 1.73 16 30 H 0.13 4.84 6.36 -2.91 -0.02 4.82 16 31 H 0.36 17.02 7.29 -74.06 -0.54 16.48 16 32 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -77.74 277.22 1.95 -75.78 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.20 Total: 26.64 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.73 Total: -29.81 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -0.86 Total: -70.63 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -2.74 Total: -49.36 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.74 1.95 -75.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259541130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.587 kcal (2) G-P(sol) polarization free energy of solvation -77.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds