Wall clock time and date at job start Mon Mar 30 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47106 * 2 1 4 4 C 1.50698 * 109.47066 * 240.00078 * 2 1 3 5 5 H 1.07999 * 119.99917 * 245.44773 * 4 2 1 6 6 C 1.37874 * 120.00198 * 65.45053 * 4 2 1 7 7 N 1.31522 * 120.00084 * 9.69999 * 6 4 2 8 8 Si 1.86797 * 120.00226 * 189.70450 * 6 4 2 9 9 H 1.48504 * 109.47242 * 84.99141 * 8 6 4 10 10 H 1.48504 * 109.47068 * 204.99169 * 8 6 4 11 11 H 1.48501 * 109.47019 * 324.99495 * 8 6 4 12 12 C 1.50693 * 109.47056 * 119.99856 * 2 1 3 13 13 C 1.34211 * 125.04131 * 84.98108 * 12 2 1 14 14 C 1.46511 * 106.99724 * 180.02562 * 13 12 2 15 15 C 1.40628 * 106.06479 * 359.97438 * 14 13 12 16 16 C 1.39128 * 119.43780 * 180.02562 * 15 14 13 17 17 C 1.37744 * 119.96999 * 0.02562 * 16 15 14 18 18 C 1.38797 * 120.68859 * 359.95584 * 17 16 15 19 19 C 1.37861 * 120.35823 * 0.04735 * 18 17 16 20 20 F 1.35101 * 120.20354 * 179.97438 * 19 18 17 21 21 N 1.36890 * 125.04499 * 265.00087 * 12 2 1 22 22 C 1.46504 * 125.05738 * 0.24361 * 21 12 2 23 23 H 1.09003 * 109.47040 * 303.50533 * 1 2 3 24 24 H 1.09008 * 109.47492 * 63.49824 * 1 2 3 25 25 H 1.08996 * 109.47616 * 183.50460 * 1 2 3 26 26 H 0.96999 * 119.99998 * 179.97438 * 7 6 4 27 27 H 1.08002 * 126.50287 * 0.03308 * 13 12 2 28 28 H 1.08002 * 120.01539 * 179.97438 * 16 15 14 29 29 H 1.07998 * 119.65799 * 179.97438 * 17 16 15 30 30 H 1.08002 * 119.82361 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.47119 * 269.71919 * 22 21 12 32 32 H 1.08998 * 109.47695 * 29.72276 * 22 21 12 33 33 H 1.09001 * 109.46812 * 149.72683 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5787 -1.6369 -1.1338 6 6 1.7944 -0.1775 -2.4796 7 7 1.3015 1.0365 -2.5936 8 14 2.1719 -1.1797 -4.0100 9 1 1.0177 -2.0604 -4.3223 10 1 2.4194 -0.2641 -5.1528 11 1 3.3789 -2.0115 -3.7718 12 6 2.0323 -0.7103 1.2304 13 6 2.1985 -2.0376 1.3401 14 6 2.6997 -2.2962 2.6923 15 6 2.7996 -1.0403 3.3171 16 6 3.2553 -0.9637 4.6294 17 6 3.6043 -2.1124 5.3047 18 6 3.5060 -3.3530 4.6902 19 6 3.0572 -3.4532 3.3905 20 9 2.9633 -4.6623 2.7952 21 7 2.3863 -0.0977 2.4023 22 6 2.3285 1.3454 2.6483 23 1 -0.3633 0.5673 0.8569 24 1 -0.3634 0.4586 -0.9197 25 1 -0.3634 -1.0257 0.0628 26 1 1.1344 1.4116 -3.4725 27 1 2.0005 -2.7752 0.5764 28 1 3.3361 -0.0040 5.1181 29 1 3.9577 -2.0471 6.3231 30 1 3.7830 -4.2447 5.2329 31 1 3.2801 1.7995 2.3720 32 1 1.5295 1.7842 2.0508 33 1 2.1331 1.5261 3.7053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259545895.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:30 Heat of formation + Delta-G solvation = 2.770929 kcal Electronic energy + Delta-G solvation = -17521.796217 eV Core-core repulsion = 14655.057538 eV Total energy + Delta-G solvation = -2866.738679 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 247.107 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.39800 -40.83466 -36.78814 -34.17353 -32.29078 -30.98508 -29.52548 -27.68279 -25.82498 -25.12913 -22.79253 -21.50748 -20.78394 -18.97304 -17.11751 -16.30080 -16.04060 -15.38916 -15.30866 -14.93821 -14.70134 -14.59344 -13.96113 -13.10028 -12.70545 -12.63337 -12.40163 -12.17989 -11.95076 -11.77019 -11.24602 -11.20249 -11.03062 -10.87933 -10.65540 -10.39803 -10.28069 -9.73389 -9.12044 -9.01459 -8.45676 -7.71202 -6.98515 -6.15186 -4.16459 1.37979 1.83103 3.26379 3.28220 3.34596 3.38166 3.43078 4.09370 4.38160 4.68808 4.99539 5.11908 5.19046 5.20852 5.39973 5.54608 5.61358 5.73225 5.80148 5.97673 6.22935 6.38699 6.56802 6.58401 6.61904 6.77526 6.84430 6.94120 7.18342 7.21901 7.50481 7.61251 7.75884 7.88728 7.91402 8.28361 8.85618 9.47623 10.94532 Molecular weight = 247.11amu Principal moments of inertia in cm(-1) A = 0.027158 B = 0.006870 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.765933 B = 4074.417916 C = 4821.531281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.094 3.906 3 H 0.044 0.956 4 C -0.512 4.512 5 H 0.066 0.934 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.138 3.862 13 C -0.207 4.207 14 C -0.136 4.136 15 C 0.111 3.889 16 C -0.138 4.138 17 C -0.093 4.093 18 C -0.193 4.193 19 C 0.136 3.864 20 F -0.142 7.142 21 N -0.485 5.485 22 C 0.081 3.919 23 H 0.012 0.988 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.263 0.737 27 H 0.148 0.852 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -1.506 12.515 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.075 3.925 3 H 0.062 0.938 4 C -0.550 4.550 5 H 0.084 0.916 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.032 3.968 13 C -0.230 4.230 14 C -0.142 4.142 15 C 0.003 3.997 16 C -0.159 4.159 17 C -0.112 4.112 18 C -0.213 4.213 19 C 0.116 3.884 20 F -0.121 7.121 21 N -0.168 5.168 22 C -0.061 4.061 23 H 0.031 0.969 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.166 0.834 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.144 0.856 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.981 -1.051 12.360 12.562 hybrid contribution 0.206 -0.619 -0.942 1.146 sum 2.188 -1.671 11.418 11.745 Atomic orbital electron populations 1.21723 0.97155 0.99401 1.00029 1.17634 0.92535 0.95885 0.86468 0.93759 1.21064 1.36055 1.08444 0.89440 0.91616 1.24929 0.95018 0.94654 0.99083 1.69951 1.44868 1.13878 1.24074 0.86563 0.78976 0.80090 0.82225 1.20352 1.21290 1.19756 1.21576 0.95790 0.92522 0.86885 1.21331 1.11896 0.95226 0.94501 1.19282 1.06916 0.91369 0.96657 1.17981 1.01932 0.88070 0.91694 1.19938 1.05257 0.98889 0.91791 1.20387 1.00715 0.90825 0.99262 1.20663 1.07897 0.98917 0.93824 1.17076 1.01268 0.78786 0.91250 1.91441 1.93922 1.42595 1.84136 1.44064 1.55821 1.05863 1.11061 1.21869 1.03549 0.78540 1.02168 0.96907 0.90832 0.94477 0.92767 0.83445 0.86430 0.85558 0.85555 0.91477 0.89368 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.05 37.16 0.34 -2.50 16 2 C 0.09 2.25 2.10 -92.93 -0.20 2.06 16 3 H 0.04 1.12 7.28 -51.92 -0.38 0.74 16 4 C -0.51 -13.58 8.19 -34.44 -0.28 -13.86 16 5 H 0.07 1.76 6.63 -52.49 -0.35 1.41 16 6 C 0.07 1.74 5.17 -17.82 -0.09 1.65 16 7 N -0.89 -24.44 12.17 55.43 0.67 -23.76 16 8 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.14 3.02 5.77 -81.76 -0.47 2.55 16 13 C -0.21 -4.54 9.92 -37.67 -0.37 -4.91 16 14 C -0.14 -2.72 6.36 -105.08 -0.67 -3.39 16 15 C 0.11 2.02 6.81 -84.00 -0.57 1.44 16 16 C -0.14 -2.01 9.95 -39.43 -0.39 -2.41 16 17 C -0.09 -1.22 10.01 -39.56 -0.40 -1.62 16 18 C -0.19 -2.83 10.01 -39.51 -0.40 -3.23 16 19 C 0.14 2.45 7.34 -39.14 -0.29 2.16 16 20 F -0.14 -2.61 17.28 2.25 0.04 -2.57 16 21 N -0.49 -9.13 3.18 -117.19 -0.37 -9.50 16 22 C 0.08 1.17 10.57 59.85 0.63 1.80 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.07 1.81 6.84 -51.92 -0.36 1.45 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.15 3.28 7.47 -52.49 -0.39 2.88 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.30 7.39 -51.93 -0.38 0.92 16 33 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 285.35 15.07 4.30 4.30 Total: -1.00 -28.72 285.35 -7.49 -36.21 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.95 Total: -0.28 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -3.16 Total: -20.24 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.30 Total: -33.27 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.72 -7.49 -36.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259545895.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.980 kcal (2) G-P(sol) polarization free energy of solvation -28.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds